Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0294600-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:12989754:12992479:-1 gene:Os05g0294600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0294600-01);Hypothetical conserved gene. (Os05t0294600-02)
Sequence	ATGGCGCTGCGAGCCCACCCGCTGCTCTCTTCCTCCTCCTTGCCGCCTCCGACCCTTCCA ATCCTCTGCCTCCGCTGTCCTGGATCTTCCCTCTCCTCCAAACGCTTCCTCCGTTCCCAC TCCCGCTCCGCAATCCGGCCGTGGCGAAACCCCTGCGCCGCCCGTCCCGGCGGACCTCGT TTCTTGGGGCAAGATGACGCCGACTCCGACGCCGACGAGGAGGACGAGGAGGAGTGGAGA TGGGCACCATCTGCCGGCCCCTCCGGAGCTCACCTCGTCGGCGCGGTGGACGAAGACGAT AGTGTTGGCGAGGGCGGGGGCGGCGTCGGGTGGGGCGCACCCGATGGCGACGCTGCCGGG GGATCGGGGATTCGAGAATCCGGTGTGGACGACGGCGGGCAGGTGGGCGAGTGGGACCTC CCTATGAGCTCCTTTCGGGGGCGGGTTCAGGTACAGCATCACCAAGAAGAGGAGGAGGAG GAGGAGGAGGAGGAGGAAGACGAAGATGGAGGTGGCTGCGAATGGTCGGACCCGGGTTTC TTCTTGCGAGGCCAAGAGGAGGAGGCCAGCAGCAGCGTGAGCACCACCACGGCCATGGAA GAGATTCTCACCTTGGCGAGGAGCCCCGCGGTCGACGGGCAGGCGTTTGCCGAGTTCTTG GCGGGGTACGGCCGCGGAGCACTCAGTGTGGAGGAATGCGTTGAGCTGATGAGGAGGATG GGGGAGGAGGGGCTGGCATTGGGGTGTCTCCACCTTCTCCGATGGATGCAGGCTCCGGAG GAGGAGCCATTGTTGTTGCCCCCGCAGGCATGGCTGCTCGCTGTTGTGGCGCTTGGACGG GCTCAGATGGCCGATGAGGTGCTGGAGATTGTGGAGAGTTTGCCTCCCGAGAGGAGATTC AGTGAGGCTGTCCTTTACAATGCTGCAATGTCAGGCCTAGCCTATCGCGGAAGATATGAT GATACCTGGAAAGTATTTAAGCTCATGGAAAAGAAAAATATCCAGCCTGACCACATGACA TCCTTAATCATGTTAGATGTAATGAACAAGAGCAAGACATCTGCCAAGGATGCATGGGAA TTCTTCCAACGGATGGAAAGAAAAGGTGTCAAGTGGAGCTTGGACATTTGTATTTCTCTT ATCAAGATCTTTTGTGACAACGGTCTGAAAACTGAAGCTCTTATCATACAGTCAGCAATG GAGAAGAAAGGAATTGCATCAAACACGAGCATGTATAACACATTAATAAATGCTTACTGC AAAGCCAATCAAATTGAAGAGGCAGAGGGAGTTTTCGTTGAGATGAAAGAGAAAGGCTTG AGTGCGACAGCAATGACCTATAATATCCTTATGGGTGCTTACTGTAGAAGATTGCAGCCA GAAGTTGTTGAGTCTTTACTGCTGGAGATGCAAGATTTAGGACTACGACCAAATGCGAGA TCATACAACTTTCTCATACGTGTTTATGGGCAACAGAAGAAAATGAGTGAAAAGGCTGAA GATGCTTTCTTAAGGATGAAGACAGATGGCATTATGCCAACGTCTTCTACATACACTTCA CTGCTTTGTGCATATGCAGTTAATGGATTGCATGAAAAGGCTTATTTGACTTATGTGGAT ATGAAAAGAGAAGGACTTAAGCCTTCCTTAGAAACATATACAGCATTGATTGACATGTTT AGGAGGGCTGGTGACACGGAGAAGCTAATGGAGACATGGAGATCAATGATCAATGAAAAG GTTCCTGGAACTAGGGTAATATTCCACATGGTGCTTGATGGTCTGGCAAAACATGGGCTG TATGTTCAGGCAACGGATGTTATATATGAGTTTAGAAGGGCTGGTTTGCAGCCTACCGTA ATGACATACAACATTTTGATGAATGCTTTTGCAAGGGGAGGACAACATTATAAATTACCC CAACTCTTGAAAGAGATGGCTGCTATGGAATTAAAACCAGATTCTGTAACATACTCTACA ATGATTTATGCGTATGCCCGTGTTCGTGACTTTTCGAGAGCATTCTATTACCACAAGCTG ATGGTTCGAAGTGGACAATTGCCTGATGTTAGTTCATATAAAAAGTTATTGAATACATTG GATGTGAAAGCTGCAAGAAAGAACATAAAGGATAAGAATGCCATAGTGGGAATCTTAAAA GGAAAGTCCAGCCTAAAACATAGGAAGGAGAAGAAGGATGAGTTTTGGAAGAACAGAAAA AAACGTTCTATGATGAACCATGTCTATGGGTACCCAAGGAAAAGATTTTTGTGA

Peptide Sequence

PEP ID	Os05t0294600-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:12989754:12992479:-1 gene:Os05g0294600 transcript:Os05t0294600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0294600-01);Hypothetical conserved gene. (Os05t0294600-02)
Sequence	MALRAHPLLSSSSLPPPTLPILCLRCPGSSLSSKRFLRSHSRSAIRPWRNPCAARPGGPR FLGQDDADSDADEEDEEEWRWAPSAGPSGAHLVGAVDEDDSVGEGGGGVGWGAPDGDAAG GSGIRESGVDDGGQVGEWDLPMSSFRGRVQVQHHQEEEEEEEEEEEDEDGGGCEWSDPGF FLRGQEEEASSSVSTTTAMEEILTLARSPAVDGQAFAEFLAGYGRGALSVEECVELMRRM GEEGLALGCLHLLRWMQAPEEEPLLLPPQAWLLAVVALGRAQMADEVLEIVESLPPERRF SEAVLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLDVMNKSKTSAKDAWE FFQRMERKGVKWSLDICISLIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAYC KANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNAR SYNFLIRVYGQQKKMSEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVD MKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVIFHMVLDGLAKHGL YVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYST MIYAYARVRDFSRAFYYHKLMVRSGQLPDVSSYKKLLNTLDVKAARKNIKDKNAIVGILK GKSSLKHRKEKKDEFWKNRKKRSMMNHVYGYPRKRFL

Transcript Sequence

Transcript ID	Os05t0294600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:12989754:12992479:-1 gene:Os05g0294600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0294600-01);Hypothetical conserved gene. (Os05t0294600-02)
Sequence	GGTTTCTACAGCTCCACCTTCCCTTGTCTTGCCTCCGCCACGAGAGAGAGAGAGAGGCGA GATGGCGCTGCGAGCCCACCCGCTGCTCTCTTCCTCCTCCTTGCCGCCTCCGACCCTTCC AATCCTCTGCCTCCGCTGTCCTGGATCTTCCCTCTCCTCCAAACGCTTCCTCCGTTCCCA CTCCCGCTCCGCAATCCGGCCGTGGCGAAACCCCTGCGCCGCCCGTCCCGGCGGACCTCG TTTCTTGGGGCAAGATGACGCCGACTCCGACGCCGACGAGGAGGACGAGGAGGAGTGGAG ATGGGCACCATCTGCCGGCCCCTCCGGAGCTCACCTCGTCGGCGCGGTGGACGAAGACGA TAGTGTTGGCGAGGGCGGGGGCGGCGTCGGGTGGGGCGCACCCGATGGCGACGCTGCCGG GGGATCGGGGATTCGAGAATCCGGTGTGGACGACGGCGGGCAGGTGGGCGAGTGGGACCT CCCTATGAGCTCCTTTCGGGGGCGGGTTCAGGTACAGCATCACCAAGAAGAGGAGGAGGA GGAGGAGGAGGAGGAGGAAGACGAAGATGGAGGTGGCTGCGAATGGTCGGACCCGGGTTT CTTCTTGCGAGGCCAAGAGGAGGAGGCCAGCAGCAGCGTGAGCACCACCACGGCCATGGA AGAGATTCTCACCTTGGCGAGGAGCCCCGCGGTCGACGGGCAGGCGTTTGCCGAGTTCTT GGCGGGGTACGGCCGCGGAGCACTCAGTGTGGAGGAATGCGTTGAGCTGATGAGGAGGAT GGGGGAGGAGGGGCTGGCATTGGGGTGTCTCCACCTTCTCCGATGGATGCAGGCTCCGGA GGAGGAGCCATTGTTGTTGCCCCCGCAGGCATGGCTGCTCGCTGTTGTGGCGCTTGGACG GGCTCAGATGGCCGATGAGGTGCTGGAGATTGTGGAGAGTTTGCCTCCCGAGAGGAGATT CAGTGAGGCTGTCCTTTACAATGCTGCAATGTCAGGCCTAGCCTATCGCGGAAGATATGA TGATACCTGGAAAGTATTTAAGCTCATGGAAAAGAAAAATATCCAGCCTGACCACATGAC ATCCTTAATCATGTTAGATGTAATGAACAAGAGCAAGACATCTGCCAAGGATGCATGGGA ATTCTTCCAACGGATGGAAAGAAAAGGTGTCAAGTGGAGCTTGGACATTTGTATTTCTCT TATCAAGATCTTTTGTGACAACGGTCTGAAAACTGAAGCTCTTATCATACAGTCAGCAAT GGAGAAGAAAGGAATTGCATCAAACACGAGCATGTATAACACATTAATAAATGCTTACTG CAAAGCCAATCAAATTGAAGAGGCAGAGGGAGTTTTCGTTGAGATGAAAGAGAAAGGCTT GAGTGCGACAGCAATGACCTATAATATCCTTATGGGTGCTTACTGTAGAAGATTGCAGCC AGAAGTTGTTGAGTCTTTACTGCTGGAGATGCAAGATTTAGGACTACGACCAAATGCGAG ATCATACAACTTTCTCATACGTGTTTATGGGCAACAGAAGAAAATGAGTGAAAAGGCTGA AGATGCTTTCTTAAGGATGAAGACAGATGGCATTATGCCAACGTCTTCTACATACACTTC ACTGCTTTGTGCATATGCAGTTAATGGATTGCATGAAAAGGCTTATTTGACTTATGTGGA TATGAAAAGAGAAGGACTTAAGCCTTCCTTAGAAACATATACAGCATTGATTGACATGTT TAGGAGGGCTGGTGACACGGAGAAGCTAATGGAGACATGGAGATCAATGATCAATGAAAA GGTTCCTGGAACTAGGGTAATATTCCACATGGTGCTTGATGGTCTGGCAAAACATGGGCT GTATGTTCAGGCAACGGATGTTATATATGAGTTTAGAAGGGCTGGTTTGCAGCCTACCGT AATGACATACAACATTTTGATGAATGCTTTTGCAAGGGGAGGACAACATTATAAATTACC CCAACTCTTGAAAGAGATGGCTGCTATGGAATTAAAACCAGATTCTGTAACATACTCTAC AATGATTTATGCGTATGCCCGTGTTCGTGACTTTTCGAGAGCATTCTATTACCACAAGCT GATGGTTCGAAGTGGACAATTGCCTGATGTTAGTTCATATAAAAAGTTATTGAATACATT GGATGTGAAAGCTGCAAGAAAGAACATAAAGGATAAGAATGCCATAGTGGGAATCTTAAA AGGAAAGTCCAGCCTAAAACATAGGAAGGAGAAGAAGGATGAGTTTTGGAAGAACAGAAA AAAACGTTCTATGATGAACCATGTCTATGGGTACCCAAGGAAAAGATTTTTGTGATGCTT TTCTTATGTGTACATTAGACCATACCTTGTATTCTGGATGTTCATCCCTTATCCATTACA GCAGCATATAAAATGAACTTTCAGG