Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0293500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:12933093:12938368:-1 gene:Os05g0293500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectate lyase B (Fragment). (Os05t0293500-01)
Sequence	ATGGCTGCCATCTTCATATTCATATGGTTGTTCGCCTCCGTTTTATCCATTTCATCAGCT TCTTCTCCTTTGCTGATCAATGGTAGTACTGCTGATGCTGCACCGGACTGCGGTACCGGC AACCCGATCGACGACTGCTGGCGTTGCGACCCCGGCTGGGCCGACAACCGGCAGCGGCTC GCCGACTGCGCCGTCGGGTTCGGCCGCCGCGCCGTCGGCGGGAAGGGGGGCAGGGTGTAT GTCGTGAACGACACCGGCGACGACGCAGCCCGCCCGGCACCCGGCACGCTCCGGTACGGC CTCGTCCAGGACGAGCCCCTCTGGATCGTGTTCGCCGGCGACATGACCATCAGCCCCGCC CACGAGCTGGTCGTTAGCTCGCGCAAGACCGTGGACGGCAGGGGCGCCCGCGTGGTGGTT GGCGACGGCGGCGCGTGCTTCGCGGTGAGGGGCGCGAGCGACGTCGTCATCCACGGGCTT ACCATACGCCGGTGCAGGCCGGCACCCAAGCTGGAGGCCGGCATGTCGGACGGCGACGGC GTCCACAACTCGAGCGACGTGTGGGTCGACCACTGCACGGTGGAGGCCTGCGCCGACGGG CTGATCGACGTGGTCGTAGGTTCCACCCGCGTGACGCTTTCCAACAACCTCCTGCGCAAC CATGACAAGGCAATTCTCCTCGGCCACAACGACGACTACACCGACGACAAGGCCATGCAG GTCACCGTTGCCTTCAATCGCTTTGGACCAGGCCTCGTCCAAAGAATGCCAAGGTGTCGG TTTGGTCTTTTCCACGTCATCAACAACGATTACATAGCATGGCAAAAGTACGCCATTGGG GGCAGTGCTTCACCGACCATAATTAGCCACGGCAACAGATTCTATGCTGATATGGCCAAA GAGGTGACGAAGCGCGATGACGATGTGCCGGAGAGCGTGTGGCACCACTGGAACTGGGTA TCCGACGGCGACCTGATGCTCAACGGCGCGTTCTTCAGGGCATCAGGCGAAGCAAGGACA GATAATTTGAAAGCCCCTAGCTTTGCAAGGTCTGCCCCCTCCGTGCCGTCGATGACTTCC TCGGCAGGCGCCCTCTCCTGCAAGGAGGGCTCGCACTGCTGA

Peptide Sequence

PEP ID	Os05t0293500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:12933093:12938368:-1 gene:Os05g0293500 transcript:Os05t0293500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectate lyase B (Fragment). (Os05t0293500-01)
Sequence	MAAIFIFIWLFASVLSISSASSPLLINGSTADAAPDCGTGNPIDDCWRCDPGWADNRQRL ADCAVGFGRRAVGGKGGRVYVVNDTGDDAARPAPGTLRYGLVQDEPLWIVFAGDMTISPA HELVVSSRKTVDGRGARVVVGDGGACFAVRGASDVVIHGLTIRRCRPAPKLEAGMSDGDG VHNSSDVWVDHCTVEACADGLIDVVVGSTRVTLSNNLLRNHDKAILLGHNDDYTDDKAMQ VTVAFNRFGPGLVQRMPRCRFGLFHVINNDYIAWQKYAIGGSASPTIISHGNRFYADMAK EVTKRDDDVPESVWHHWNWVSDGDLMLNGAFFRASGEARTDNLKAPSFARSAPSVPSMTS SAGALSCKEGSHC

Transcript Sequence

Transcript ID	Os05t0293500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:12933093:12938368:-1 gene:Os05g0293500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectate lyase B (Fragment). (Os05t0293500-01)
Sequence	AACAAAAACAAGAATGGCTGCCATCTTCATATTCATATGGTTGTTCGCCTCCGTTTTATC CATTTCATCAGCTTCTTCTCCTTTGCTGATCAATGGTAGTACTGCTGATGCTGCACCGGA CTGCGGTACCGGCAACCCGATCGACGACTGCTGGCGTTGCGACCCCGGCTGGGCCGACAA CCGGCAGCGGCTCGCCGACTGCGCCGTCGGGTTCGGCCGCCGCGCCGTCGGCGGGAAGGG GGGCAGGGTGTATGTCGTGAACGACACCGGCGACGACGCAGCCCGCCCGGCACCCGGCAC GCTCCGGTACGGCCTCGTCCAGGACGAGCCCCTCTGGATCGTGTTCGCCGGCGACATGAC CATCAGCCCCGCCCACGAGCTGGTCGTTAGCTCGCGCAAGACCGTGGACGGCAGGGGCGC CCGCGTGGTGGTTGGCGACGGCGGCGCGTGCTTCGCGGTGAGGGGCGCGAGCGACGTCGT CATCCACGGGCTTACCATACGCCGGTGCAGGCCGGCACCCAAGCTGGAGGCCGGCATGTC GGACGGCGACGGCGTCCACAACTCGAGCGACGTGTGGGTCGACCACTGCACGGTGGAGGC CTGCGCCGACGGGCTGATCGACGTGGTCGTAGGTTCCACCCGCGTGACGCTTTCCAACAA CCTCCTGCGCAACCATGACAAGGCAATTCTCCTCGGCCACAACGACGACTACACCGACGA CAAGGCCATGCAGGTCACCGTTGCCTTCAATCGCTTTGGACCAGGCCTCGTCCAAAGAAT GCCAAGGTGTCGGTTTGGTCTTTTCCACGTCATCAACAACGATTACATAGCATGGCAAAA GTACGCCATTGGGGGCAGTGCTTCACCGACCATAATTAGCCACGGCAACAGATTCTATGC TGATATGGCCAAAGAGGTGACGAAGCGCGATGACGATGTGCCGGAGAGCGTGTGGCACCA CTGGAACTGGGTATCCGACGGCGACCTGATGCTCAACGGCGCGTTCTTCAGGGCATCAGG CGAAGCAAGGACAGATAATTTGAAAGCCCCTAGCTTTGCAAGGTCTGCCCCCTCCGTGCC GTCGATGACTTCCTCGGCAGGCGCCCTCTCCTGCAAGGAGGGCTCGCACTGCTGAGATCA GCTACTGCTGCATTCGATGATTTTTCTTTCTGGATGTAATAGTTGCATAGGATCGAACAA GATTAAACAAGCCTATCAGAAGATGTGAATGGCAGCG