Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0279900-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:11700217:11702760:1 gene:Os05g0279900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. (Os05t0279900-00)
Sequence

ATGCCGCCGGACGGGCCGGACTGCTGGCCGCCGTCGGATAACCGGCGGCAGTGGCTCGTC
TTCTCCAACCTCGACGGCCTGACGCTGCGCGGCGCCGGCACGATCGAGGGCAACGGCGAG
GGCTGGTGGAATCTCCCCTGCAAGCCTCACAGGTTGGTGAGGTTCTTCATGAGCCGAAAC
CTGGTGGTGGAGGGCCTGAGGGTGGAGAACAGCCCGGAGTTCCACTTCCGGTTCGACGGC
TGCAGCGACGTGCGCGTCGACGGGCTGTCCATCAGGTCGCCGGCGAACAGCCCCAACACC
GACGGCATCCACGTCGAGAACACCCAGCGCGTTGCCATCTACAACTCCATGATCAGCAAC
GGTGATGACTGCATCTCAATTGGGACGGGGAGCTACGACGTCGACATTCAAAATGTTTCT
TGCGGCCCTGGACACGGCATAAGCATCGGGAGCTTGGGCGTGCACAACTCGCAGGCGTGC
GTGGCGAACGTGACGGTGCGGAACGCGGTGATCCGGAACTCGGACAACGGGCTGCGGATC
AAGACGTGGCAGGGCGGGATGGGGTCGGTGTCCGGGATCAACTTCGACACGGTGAGCATG
GAGAACGTGCGGAACTGCATCATCATCGACCAGTACTACTGCCTGGACAAGCGGTGCATG
AACCAGTCCACCGCCGTGCACGTCACCGACGTCTCCTACGCCAACGTCCGGGGATCCTAC
GACGTCCGCGCGGCCCCGATCCACTTCGCCTGCAGCGACACCGTCCCCTGCACCAACATC
ACCATGTCCGAGGTCGAGCTGCTCCCCTTCAGCGGCGAGCTCGTCGACGACCCATTCTGC
TGGAGCGCCTACGGCCTCCAGCAGACGCCCACCATCCCGCCCATCTACTGCCTCCAGGAC
GGCCTGCCGGACTCGCTCCTCGACAACCCGGACCTCAGATGCCGATGA

Peptide Sequence

PEP ID

Os05t0279900-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:11700217:11702760:1 gene:Os05g0279900 transcript:Os05t0279900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. (Os05t0279900-00)
Sequence

MPPDGPDCWPPSDNRRQWLVFSNLDGLTLRGAGTIEGNGEGWWNLPCKPHRLVRFFMSRN
LVVEGLRVENSPEFHFRFDGCSDVRVDGLSIRSPANSPNTDGIHVENTQRVAIYNSMISN
GDDCISIGTGSYDVDIQNVSCGPGHGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLRI
KTWQGGMGSVSGINFDTVSMENVRNCIIIDQYYCLDKRCMNQSTAVHVTDVSYANVRGSY
DVRAAPIHFACSDTVPCTNITMSEVELLPFSGELVDDPFCWSAYGLQQTPTIPPIYCLQD
GLPDSLLDNPDLRCR

Transcript Sequence

Transcript ID

Os05t0279900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:11700217:11702760:1 gene:Os05g0279900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. (Os05t0279900-00)
Sequence

ATGCCGCCGGACGGGCCGGACTGCTGGCCGCCGTCGGATAACCGGCGGCAGTGGCTCGTC
TTCTCCAACCTCGACGGCCTGACGCTGCGCGGCGCCGGCACGATCGAGGGCAACGGCGAG
GGCTGGTGGAATCTCCCCTGCAAGCCTCACAGGTTGGTGAGGTTCTTCATGAGCCGAAAC
CTGGTGGTGGAGGGCCTGAGGGTGGAGAACAGCCCGGAGTTCCACTTCCGGTTCGACGGC
TGCAGCGACGTGCGCGTCGACGGGCTGTCCATCAGGTCGCCGGCGAACAGCCCCAACACC
GACGGCATCCACGTCGAGAACACCCAGCGCGTTGCCATCTACAACTCCATGATCAGCAAC
GGTGATGACTGCATCTCAATTGGGACGGGGAGCTACGACGTCGACATTCAAAATGTTTCT
TGCGGCCCTGGACACGGCATAAGCATCGGGAGCTTGGGCGTGCACAACTCGCAGGCGTGC
GTGGCGAACGTGACGGTGCGGAACGCGGTGATCCGGAACTCGGACAACGGGCTGCGGATC
AAGACGTGGCAGGGCGGGATGGGGTCGGTGTCCGGGATCAACTTCGACACGGTGAGCATG
GAGAACGTGCGGAACTGCATCATCATCGACCAGTACTACTGCCTGGACAAGCGGTGCATG
AACCAGTCCACCGCCGTGCACGTCACCGACGTCTCCTACGCCAACGTCCGGGGATCCTAC
GACGTCCGCGCGGCCCCGATCCACTTCGCCTGCAGCGACACCGTCCCCTGCACCAACATC
ACCATGTCCGAGGTCGAGCTGCTCCCCTTCAGCGGCGAGCTCGTCGACGACCCATTCTGC
TGGAGCGCCTACGGCCTCCAGCAGACGCCCACCATCCCGCCCATCTACTGCCTCCAGGAC
GGCCTGCCGGACTCGCTCCTCGACAACCCGGACCTCAGATGCCGATGA