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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0277000-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:11418476:11419481:-1 gene:Os05g0277000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA33 description:Similar to Expansin Os-EXPA3. (Os05t0277000-00)
Sequence

ATGGCAATGCCAGTAGTACAAGTGCTTCTTCTTTGCGCATTAGCTTATCAAGCAGTCGAC
GCCCAGTGGACACCAGCCACGGCAACGTTCTACGGCGGCAGCGATGGCGCTGGTACCATG
GGAGGCGCGTGTGGATACGGCAACCTGTACAACGCCGGGTACGGGCTGAACAACGCGGCG
CTGAGCTCGGCGCTGTTCAACGACGGCGCCATGTGCGGCGCGTGCTACACCATCGCCTGC
GACACCAGCCAGTCCACGTGGTGCAAGCCCGGCACGTCCATCACCATCACGGCCACCAAC
CTGTGCCCGCCCAACTACGCAAAAAAAAGCGACGCCGGCGGGTGGTGCAACCCGCCTCGC
AAGCACTTCGACATGTCGCAGCCGGCCTGGACCTCCATCGCCATCTACCAAGCCGGCATC
GTCCCCGTCAATTTTAAGAGGGTACCGTGCCAGAAGAGCGGGGGCATCAGGTTCACCATA
AGCGGGAGGGACTACTTCGAGCTGGTGACGGTGTTCAACGTGGGAGGCAGCGGCGTGGTG
GCGCAGGTGTCGATCAAGGGGTCCAAGACGGACTGGATGGCGATGAGCAGGAACTGGGGC
CAAAACTGGCAGAGCAACGCCTACCTCAACACCCAGAGCCTGTCGTTCAAGGTGAAGCTC
GACGACGCCCGCGAGGTCACGGTGTGGAACATCGCGCCCTCCAACTGGAACTTCGGCACC
ACCTACACGTCCAACATCAACTTCTAG

Peptide Sequence

PEP ID

Os05t0277000-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:11418476:11419481:-1 gene:Os05g0277000 transcript:Os05t0277000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA33 description:Similar to Expansin Os-EXPA3. (Os05t0277000-00)
Sequence

MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAA
LSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPR
KHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVV
AQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGT
TYTSNINF

Transcript Sequence

Transcript ID

Os05t0277000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:11418476:11419481:-1 gene:Os05g0277000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA33 description:Similar to Expansin Os-EXPA3. (Os05t0277000-00)
Sequence

ATGGCAATGCCAGTAGTACAAGTGCTTCTTCTTTGCGCATTAGCTTATCAAGCAGTCGAC
GCCCAGTGGACACCAGCCACGGCAACGTTCTACGGCGGCAGCGATGGCGCTGGTACCATG
GGAGGCGCGTGTGGATACGGCAACCTGTACAACGCCGGGTACGGGCTGAACAACGCGGCG
CTGAGCTCGGCGCTGTTCAACGACGGCGCCATGTGCGGCGCGTGCTACACCATCGCCTGC
GACACCAGCCAGTCCACGTGGTGCAAGCCCGGCACGTCCATCACCATCACGGCCACCAAC
CTGTGCCCGCCCAACTACGCAAAAAAAAGCGACGCCGGCGGGTGGTGCAACCCGCCTCGC
AAGCACTTCGACATGTCGCAGCCGGCCTGGACCTCCATCGCCATCTACCAAGCCGGCATC
GTCCCCGTCAATTTTAAGAGGGTACCGTGCCAGAAGAGCGGGGGCATCAGGTTCACCATA
AGCGGGAGGGACTACTTCGAGCTGGTGACGGTGTTCAACGTGGGAGGCAGCGGCGTGGTG
GCGCAGGTGTCGATCAAGGGGTCCAAGACGGACTGGATGGCGATGAGCAGGAACTGGGGC
CAAAACTGGCAGAGCAACGCCTACCTCAACACCCAGAGCCTGTCGTTCAAGGTGAAGCTC
GACGACGCCCGCGAGGTCACGGTGTGGAACATCGCGCCCTCCAACTGGAACTTCGGCACC
ACCTACACGTCCAACATCAACTTCTAG