Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0276500-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:11393115:11394895:-1 gene:Os05g0276500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 3 description:Expansin Os-EXPA3. (Os05t0276500-01)
Sequence

ATGCTCTCTGGAATGGAGAAACAACCTGCAATGCTTCTCGTTCTTGTGACACTCTGCGCC
TTCGCATGCAAGCGATCCGTCGCACAGTCTGCCTTTGCCACGTTCTACGGTGGCAAGGAC
GGGTCGGGCACCATGGGTGGCGCGTGTGGGTACGGTAACCTGTACAACGCCGGGTACGGG
CTGTACAACGCGGCGCTGAGCTCGGCGCTGTTCAACGACGGCGCCATGTGCGGCGCGTGC
TACACCATCACCTGCGACACCAGCCAGACCAAGTGGTGCAAGCCCGGCGGCAACTCCATC
ACCATCACGGCCACCAACTTATGCCCGCCTAACTGGGCGCTGCCCAGCAACAGCGGCGGG
TGGTGCAACCCACCGCGGCAGCACTTCGACATGTCACAGCCGGCCTGGGAGAACATCGCC
GTCTATCAAGCCGGCATTGTCCCCGTCAACTACAAGAGGGTTCCGTGCCAGAGGAGCGGG
GGGATCCGGTTCGCGATCAGCGGTCACGACTACTTTGAGCTTGTGACCGTGACGAACGTG
GGCGGCAGCGGCGTGGTGGCGCAGATGTCGATCAAGGGGTCCAACACGGGCTGGATGGCG
ATGAGCAGGAATTGGGGCGCCAATTGGCAGAGCAACGCGTACCTCGCCGGGCAGAGCCTG
TCCTTCATTGTGCAGCTCGACGACGGCCGAAAGGTCACGGCCTGGAACGTCGCCCCGTCC
AACTGGTTCTTCGGTGCCACCTACTCTACCTCTTGGGTGCAGTTCTGA

Peptide Sequence

PEP ID

Os05t0276500-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:11393115:11394895:-1 gene:Os05g0276500 transcript:Os05t0276500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 3 description:Expansin Os-EXPA3. (Os05t0276500-01)
Sequence

MLSGMEKQPAMLLVLVTLCAFACKRSVAQSAFATFYGGKDGSGTMGGACGYGNLYNAGYG
LYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGG
WCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNV
GGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPS
NWFFGATYSTSWVQF

Transcript Sequence

Transcript ID

Os05t0276500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:11393115:11394895:-1 gene:Os05g0276500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 3 description:Expansin Os-EXPA3. (Os05t0276500-01)
Sequence

ACAAAACGAAAACCTAAAGAATCACCAGCCTTGCAAACCAATCAACCTGTCTAGATTAAT
TTTTGCATGCTCTCTGGAATGGAGAAACAACCTGCAATGCTTCTCGTTCTTGTGACACTC
TGCGCCTTCGCATGCAAGCGATCCGTCGCACAGTCTGCCTTTGCCACGTTCTACGGTGGC
AAGGACGGGTCGGGCACCATGGGTGGCGCGTGTGGGTACGGTAACCTGTACAACGCCGGG
TACGGGCTGTACAACGCGGCGCTGAGCTCGGCGCTGTTCAACGACGGCGCCATGTGCGGC
GCGTGCTACACCATCACCTGCGACACCAGCCAGACCAAGTGGTGCAAGCCCGGCGGCAAC
TCCATCACCATCACGGCCACCAACTTATGCCCGCCTAACTGGGCGCTGCCCAGCAACAGC
GGCGGGTGGTGCAACCCACCGCGGCAGCACTTCGACATGTCACAGCCGGCCTGGGAGAAC
ATCGCCGTCTATCAAGCCGGCATTGTCCCCGTCAACTACAAGAGGGTTCCGTGCCAGAGG
AGCGGGGGGATCCGGTTCGCGATCAGCGGTCACGACTACTTTGAGCTTGTGACCGTGACG
AACGTGGGCGGCAGCGGCGTGGTGGCGCAGATGTCGATCAAGGGGTCCAACACGGGCTGG
ATGGCGATGAGCAGGAATTGGGGCGCCAATTGGCAGAGCAACGCGTACCTCGCCGGGCAG
AGCCTGTCCTTCATTGTGCAGCTCGACGACGGCCGAAAGGTCACGGCCTGGAACGTCGCC
CCGTCCAACTGGTTCTTCGGTGCCACCTACTCTACCTCTTGGGTGCAGTTCTGAAGTACT
GCAACGTACGTACAGGTTTAGTTGATAAATTATACACATGCTGTTCATGGACATAATTAA
TTAATTACTAGCCATCCCGGCCGTTTGTGCATGTTCTGCTAGGTTGTGTGTTGCGTGGCA
TTAACTTGTTTTTCTCTGTTACCAGTCGTTTTGTCAAACGCGTTGGTTGTGGCAAGCGCG
ATTGAATGTTTTGCCCACCAATTAATGTAACTGATCGTATGGGTGTTGAGTTAATAAATT
ATGTTTAATTATGCGGATGCC