Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0275000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:11253553:11256527:-1 gene:Os05g0275000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0275000-01)
Sequence	ATGGACGCCACCGGCCGCGGGGTTTTCCCCAACAAGCCCGCCCTCCCTGCCGGCCCCAAG AAGCGCCCCCCTCCGCACACGGTGCTCCTGCCGGCCACGCCGCCGCCGCCGCCGTCGCGC TCCTCGCTCCCGCTCGACTCGCTTCTCCTCCACCTCACCGCGGCCCCGCCGCCGCCGCAG CCGCCGGCCACGCGCCGGCCGCATCCCACCCCGACCCCGCCGCACTCCTTCCTCTCCCCC GCCGCGCAGTCCCTCGTGGCCGCTATCTCCTCGCAGCCGCTCCCCTCGCTCCCGGCTTTC CTCTCCTCCCGCCGTGACGAGCTGCTGCGCTCTGACCTCCCCTCCCTCCTCAAGGCGCTC GAGCTCTCTGGCCACTGGGAGTGGGCTCTCGCGCTCCTCCGCTGGGCCAGCGACGAGGGC GCCGCCGATGCCGCGGCGCTCGAGATGGTCGTCCGCGCGCTCGGCCGCGAGGGCCAGCAC GACGTCGTCTGCGACCTGCTCGACGAAATGCCGCTCCCGCCCGGATCACGCCTGGACGTC CGCGCCTACACCACGGTGCTTCACGCGCTCTCCCGCGCGGGCCGGTACGAGCGCGCGCTC CAGCTGTTCGCCGAGCTCCGGCGCCAGGGGGTGGTGCCCACGATCGTCACCTACAACGTC GTGCTCGACGTGTACGGCCGGATGGGGCGCTCGTGGCCGCGTATCGTCGCTCTACTGGAG GAGATGCGTGCCGCCGGCGTCGAGCCCGACGACTTCACTGCCAGCACAGTGATCGCGGCA TGCGGCCGTGATGGCCTCCTTGATCAGGCGGTCGCCTTCTTTGAGGACCTCAAGGCCCGT GGCCACGTCCCGTGCGTTGTCACATACAATGCACTCCTGCAAGTGTTTGGCAAGGCCGGG AACTACACTGAGGCGCTGCGGGTGCTCAAGGAAATGGAGGATAGTGGCTGCCAGCCGGAT GCCGTCACATACAATGAGCTCGCCGGGACATATGCCAGGGCTGGGTTCTTTGAGGAGGCT GCCAAGTGCCTTGACACAATGACCAGCAAGGGATTATTGCCTAACACATTCACGTACAAT ACTGTCATGACGGCATACGCGAATGTCGGTAGGGTGGATGAAGCACTAGCTCTGTTTGAT CGAATGAAGAAGAATGGGTATGTTCCGAATGTGAACACCTACAATCTTATCTTTGGTATG CTGGGGAAGAAATCAAGGTTCACCGCGATGCTGGAGATGCTTGAGGAGATGTCAAGGAGT GGATGCACACCGAATCGGGTCACCTGGAACACGATGTTGGCCGTCTGTGGGAAGCGGGGT ATGGAGGACTATGTCACCAGGGTACTCAACGGGATGAAATCTTGTGGGGTTGAGCTGAGC CGAGATACCTACAACACACTGATATCTGCCTATGGTCGATGTGGTTCGAGGACCTATGCT TTTAAGATGTATGATGAAATGATCAGTTCTGGCTTCACCCCTTGCCTCACCACATACAAT GCTTTGCTGAATGTGCTGTCAAGACAAGGTGATTGGTCCACTGCTCAGTCCATAGTAAGC AAAATGCTGAAGAATGGTTTCAAGCCGAATGATCAGTCATATTCACTACTGCTCCAGTGC TATGCAAAGGGTGGCAATGCAGCTGGGATAGAGTCTATCGAGAAAGAAGTTTATGTCGGT ACAATTTTTCCTAGTTGGGTTATCTTGCGGACACTTGTGATCGCAAACTTCAAGTGCCGT AGATTAGAAGGGGTTGAGAAGGCATTTCAAGAGGTAAAGGCACAGGGTTACAAGCCTGAT CTTGTCATATTCAACTCCATGCTTGCAATGTATGCAAAGAATGGATTATATAGCAAGGCC ACAGAGATGTTCGATTCAATAAAGCAGAGTGGGCTGAGCCCTGATCTAATCACTTACAAC AGCTTAATGGACATGTATGCCAAGTCCAATGAGTCTTGGGAAGCTGAGAAAATACTTAAA CAGCTCAAAAGTTCTCAGGTGAAGCCTGACGTTGTGTCATATAACACCGTCATAAACGGA TTCTGCAAGCAAGGTCTGATCAAAGAAGCTCAGAGGATCCTATCTGAGATGATTGCTGAT GGCATGGCTCCATGTGTTGTAACCTATCACACACTAGTTGGAGGATACGCCAGCCTGGAG ATGTTTAATGAGGCAAGAGAGGTTGTCAACTACATGATTCACCACAACTTGAAGCCTATG GAGCTGACATACAGGAGAGTAGTCGACAGTTACTGCAAAGCCAAGCGGTATGATGAGGCC CGTGAGTTCCTGTCTGAAATTTCAGATACTGACCAAAATTTTGATCAGAAGTTGCAGCAC ATGCTTGAAGCCCGTATAAAGGATGCTCAATTTGGAAGATAA

Peptide Sequence

PEP ID	Os05t0275000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:11253553:11256527:-1 gene:Os05g0275000 transcript:Os05t0275000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0275000-01)
Sequence	MDATGRGVFPNKPALPAGPKKRPPPHTVLLPATPPPPPSRSSLPLDSLLLHLTAAPPPPQ PPATRRPHPTPTPPHSFLSPAAQSLVAAISSQPLPSLPAFLSSRRDELLRSDLPSLLKAL ELSGHWEWALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDV RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG NYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYN TVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRS GCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYA FKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC YAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPD LVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILK QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE MFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQH MLEARIKDAQFGR

Transcript Sequence

Transcript ID	Os05t0275000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:11253553:11256527:-1 gene:Os05g0275000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0275000-01)
Sequence	ATCCCGAAACCCCATCGCCTCCGCTCCCCTCCGCGCCATCGTCGTAGGCTAGTAGCTCTC CCTGGTCGGCGGCGATGGACGCCACCGGCCGCGGGGTTTTCCCCAACAAGCCCGCCCTCC CTGCCGGCCCCAAGAAGCGCCCCCCTCCGCACACGGTGCTCCTGCCGGCCACGCCGCCGC CGCCGCCGTCGCGCTCCTCGCTCCCGCTCGACTCGCTTCTCCTCCACCTCACCGCGGCCC CGCCGCCGCCGCAGCCGCCGGCCACGCGCCGGCCGCATCCCACCCCGACCCCGCCGCACT CCTTCCTCTCCCCCGCCGCGCAGTCCCTCGTGGCCGCTATCTCCTCGCAGCCGCTCCCCT CGCTCCCGGCTTTCCTCTCCTCCCGCCGTGACGAGCTGCTGCGCTCTGACCTCCCCTCCC TCCTCAAGGCGCTCGAGCTCTCTGGCCACTGGGAGTGGGCTCTCGCGCTCCTCCGCTGGG CCAGCGACGAGGGCGCCGCCGATGCCGCGGCGCTCGAGATGGTCGTCCGCGCGCTCGGCC GCGAGGGCCAGCACGACGTCGTCTGCGACCTGCTCGACGAAATGCCGCTCCCGCCCGGAT CACGCCTGGACGTCCGCGCCTACACCACGGTGCTTCACGCGCTCTCCCGCGCGGGCCGGT ACGAGCGCGCGCTCCAGCTGTTCGCCGAGCTCCGGCGCCAGGGGGTGGTGCCCACGATCG TCACCTACAACGTCGTGCTCGACGTGTACGGCCGGATGGGGCGCTCGTGGCCGCGTATCG TCGCTCTACTGGAGGAGATGCGTGCCGCCGGCGTCGAGCCCGACGACTTCACTGCCAGCA CAGTGATCGCGGCATGCGGCCGTGATGGCCTCCTTGATCAGGCGGTCGCCTTCTTTGAGG ACCTCAAGGCCCGTGGCCACGTCCCGTGCGTTGTCACATACAATGCACTCCTGCAAGTGT TTGGCAAGGCCGGGAACTACACTGAGGCGCTGCGGGTGCTCAAGGAAATGGAGGATAGTG GCTGCCAGCCGGATGCCGTCACATACAATGAGCTCGCCGGGACATATGCCAGGGCTGGGT TCTTTGAGGAGGCTGCCAAGTGCCTTGACACAATGACCAGCAAGGGATTATTGCCTAACA CATTCACGTACAATACTGTCATGACGGCATACGCGAATGTCGGTAGGGTGGATGAAGCAC TAGCTCTGTTTGATCGAATGAAGAAGAATGGGTATGTTCCGAATGTGAACACCTACAATC TTATCTTTGGTATGCTGGGGAAGAAATCAAGGTTCACCGCGATGCTGGAGATGCTTGAGG AGATGTCAAGGAGTGGATGCACACCGAATCGGGTCACCTGGAACACGATGTTGGCCGTCT GTGGGAAGCGGGGTATGGAGGACTATGTCACCAGGGTACTCAACGGGATGAAATCTTGTG GGGTTGAGCTGAGCCGAGATACCTACAACACACTGATATCTGCCTATGGTCGATGTGGTT CGAGGACCTATGCTTTTAAGATGTATGATGAAATGATCAGTTCTGGCTTCACCCCTTGCC TCACCACATACAATGCTTTGCTGAATGTGCTGTCAAGACAAGGTGATTGGTCCACTGCTC AGTCCATAGTAAGCAAAATGCTGAAGAATGGTTTCAAGCCGAATGATCAGTCATATTCAC TACTGCTCCAGTGCTATGCAAAGGGTGGCAATGCAGCTGGGATAGAGTCTATCGAGAAAG AAGTTTATGTCGGTACAATTTTTCCTAGTTGGGTTATCTTGCGGACACTTGTGATCGCAA ACTTCAAGTGCCGTAGATTAGAAGGGGTTGAGAAGGCATTTCAAGAGGTAAAGGCACAGG GTTACAAGCCTGATCTTGTCATATTCAACTCCATGCTTGCAATGTATGCAAAGAATGGAT TATATAGCAAGGCCACAGAGATGTTCGATTCAATAAAGCAGAGTGGGCTGAGCCCTGATC TAATCACTTACAACAGCTTAATGGACATGTATGCCAAGTCCAATGAGTCTTGGGAAGCTG AGAAAATACTTAAACAGCTCAAAAGTTCTCAGGTGAAGCCTGACGTTGTGTCATATAACA CCGTCATAAACGGATTCTGCAAGCAAGGTCTGATCAAAGAAGCTCAGAGGATCCTATCTG AGATGATTGCTGATGGCATGGCTCCATGTGTTGTAACCTATCACACACTAGTTGGAGGAT ACGCCAGCCTGGAGATGTTTAATGAGGCAAGAGAGGTTGTCAACTACATGATTCACCACA ACTTGAAGCCTATGGAGCTGACATACAGGAGAGTAGTCGACAGTTACTGCAAAGCCAAGC GGTATGATGAGGCCCGTGAGTTCCTGTCTGAAATTTCAGATACTGACCAAAATTTTGATC AGAAGTTGCAGCACATGCTTGAAGCCCGTATAAAGGATGCTCAATTTGGAAGATAAGCTA CTATGCCAACGTGTATCATCTTATGTCATTTTTATCTTTGTGTGCTCTTCAAGGATATGG AGTTTCCAAGTTTTGATAGGGAAGTCAGTGTAGTATTACTTGTGAAGAGCCTGCATTTGC CATGGGTGGCACGCTACTGCACCAAATGGTGCCGCACAACGTCAAATTAAATGGATTTTC CTCTCATCTTCAACAGGTGTACAGTGTACTTCTGAAGTCACATTCGCGGTGCCTAAGTAC AGAATCTGGTAGATTGTCCGATTGTTTTGAAGAGTCAAGATTGATTTGATCTAGTGCAAC TTAATCGGTTAGCAGCATTATCAATTTCTTATGGACTGGATTGTCCATGTGTTTTTCGAT TTTCAGGTCACTTGTTTATGCTTGAATGGTTTCTATAGGGCTAACCTGTTTATAAAAAAA AAATGTAGAATACCATGTTTTTTTTGACGCAATAGAATACCGTGTTAGACTTTTGAACTA TCCATTGATAATGATAATAAAGTCTATATTGGAGT