Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0274200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:11189467:11198038:1 gene:Os05g0274200 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MSH2 (MUS1). (Os05t0274200-01)
Sequence	ATGGAGGGCGACGACTTCTTGCCGGAGGGCGGCAAGCTCCCCGAGCTCAAGCTAGATGCG AGGCAAGCGCAGGGCTTCATCTCTTTCTTCAAGAAACTGCCGCAGGATTCGAGGGCTATT CGTCTCTTCGATCGGCGGGATTATTACACTGCTCATGGAGAGAATGCCACATTCATTGCA AAAATATACTATCACACAATGTCTGCCTTACGCCAATTAGGTAGCAACTCTGATGGACTC TCAAGTGTCAGTGTGAGCAAGACTATGTTTGAGACCATCGCCCGCAACCTTTTGTTAGAG AGGACAGACCGTACATTGGAACTCTATGAGGGAAGTGGGTCTAGTTGGAGGTTAACAAAA TCTGGAACACCTGGAAATATTGGCAGTTTTGAAGATATTCTGTTTGCAAACAATGACATG CAAGATTCTCCGGTAACTGTTGCATTGTTTCCTGTGTTCCAGGAAGGACAACTATATGTA GGTCTTAGTTTTGTTGATTTGACAAACAGGAAGCTTGGGTTGTCTGAGTTTCCCGAAGAT AGTCGATTCACAAATGTAGAGTCAGCCCTTGTTGCATTAGGTTGCAAGGAGTGTCTTCTC CCAGCAGATTGTGAGAAATCTATAGATTTGAAGCCTCTTCAGGATGCTATCACTAACTGC AATGTTCTATTAACTGAAAGAAAGAAGGTTGAATTTAAATCCAGAGATCTTGTGCAGGAT CTTGGTAGAATAATCAGAGGTCCTGTTGAGCCAGTTCGTGATCTTGTATCTCAGTTTGAC TATGCATTGGGTGCCCTTGGAGCTCTAGTTTCATATGCTGAGTTGCTAGCAGATGATACA AACTACGGAAATTACACAATTGAGAAATACAGTTTGGACCGCTACATGCGTCTTGATTCT GCTGCTGTGCGAGCATTGAATATTGCCGAAGCTAAAACTGATGTAAACAAGAACTTCAGT TTGTTTGGTTTGATGAACAGAACCTGTACAGTAGGTATGGGAAAGAGACTGCTTAACAGA TGGCTGAAACAACCTCTGCTAGATGTAAATGAAATCAATAACAGATTAGATATGGTTCAG GCTTTCGTAGAAGATCCAGAGCTTCGTCAGGGACTTAGGTACCAACTCAAAAGAATGTCG GACATTGACCGTCTGACACATGCTCTGCGGAAGAGAACAGCCAATCTGCAGCCTGTTGTC AAGCTCTACCAGTCCTGCATTAGAGTCTCATACATCAAGAATGTTCTTCAACAATATGAT GGCAGTTTTTCTGCGCTGATAAGGACAAAGTTTCTTAATTCTTTAGATGAGTGGCTGACA GAGGATAGGTTTGGTAGGTTTGCTTCTCTTGTTGAGACAGCTATTGACCTTGATCAACTT GAGAATGGTGAGTATAGGATATCTCCCCGATATTCTTCTGATTTGGCTGTGCTGAAGGAT GAGCTTTCTGAAGTTGAAAATCACATCAACAATTTGCACAAGCATACAGCTGCTGATCTG GATCTTACTATTGATAAGCAATTGAAGCTAGAAAAAGGGCAGCTTGGCCATGTGTTCAGA ATCTCAAAGAAAGATGAACAGAAGGTTAGGAAGAAACTCACTAGCAATTACATAATCATA GAAACTCGTAAGGATGGTGTGAAGTTCACAAGCTCCAAGCTTAAAAAGTTAGGCGACCAA TACCAGGCACTGCTTGGTGAGTACACAAGTTGTCAGAAAAAGGTTGTTGATGATGTAGTA AGAGTTTCAGCCTCCTTCTCAGAGGTATTTGAAAACTTTGCTGCGATACTATCTGAGTTG GATGTTTTACAAAGTTTTGCTGATTTAGCAACAAGTTCCCCAATTCCTTATGTAAGACCA GAAATCACAGCATCGGAGGAAGGAGATATCATTTTAGAAGGTAGCAGACATCCTTGTCTG GAGGCCCAAGATGGTGTTAACTTTATACCAAATGATTGCACTTTGGTGAGAGAAAAAAGT TGGTTTCAGATCATCACTGGGCCAAACATGGGTGGAAAGTCCACTTTTATACGACAGGTT GGTGTGAATGTCCTGATGGCACAAGTTGGATCGTTCGTTCCATGTGATCGGGCGAGCATT AGTGTGAGAGATTGTATTTTTGCTCGTGTTGGTGCTGGTGATTGCCAGCTACGTGGTGTT TCAACCTTTATGCAAGAAATGCTTGAAACAGCATCCATCTTGAAAGGTGCATCGGACAAG TCTCTTATTATTATTGATGAGTTGGGGCGTGGAACTTCCACATATGATGGATTTGGTCTT GCATGGGCTATCTGTGAGCATCTTGTGGAAGTGACTAGAGCACCTACGTTGTTTGCCACG CATTTTCATGAATTAACTGCATTAGGACACAAAAGTGGTGATGAGCACCAACACGTTCCA AATTTGGGAATTGCAAATTACCATGTGGGTGCACATATAGACCCATCAAGTCGGAAGTTA ACTATGCTTTATAAGGTTGAACCCGGTGCATGTGACCAAAGCTTTGGTATCCACGTTGCA GAATTCGCTAATTTTCCAGAAGCTGTTGTTGCTCTTGCAAAAAGCAAAGCAGAAGAATTA GAAGATTTTTCAACTGCGCCCAATTTTTCCGATGATTCAAAAGATGAGGTTGGATCAAAA CGCAAGAGGGTATTTAGCCCAGACGATGTGACTAGAGGAGCTGCTCGCGCTCGCCTTTTG TTGGAGGAATTGGCCTCATTGCCTCTAGACGAGATGGATGGCACCAAGGCCGCAGAAACC GTCACCAAACTGAAATCCGACTTCGAGAAAGATGCAGCTGATAATCCTTGGCTTCAGCAG TTCCTTTGA

Peptide Sequence

PEP ID	Os05t0274200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:11189467:11198038:1 gene:Os05g0274200 transcript:Os05t0274200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MSH2 (MUS1). (Os05t0274200-01)
Sequence	MEGDDFLPEGGKLPELKLDARQAQGFISFFKKLPQDSRAIRLFDRRDYYTAHGENATFIA KIYYHTMSALRQLGSNSDGLSSVSVSKTMFETIARNLLLERTDRTLELYEGSGSSWRLTK SGTPGNIGSFEDILFANNDMQDSPVTVALFPVFQEGQLYVGLSFVDLTNRKLGLSEFPED SRFTNVESALVALGCKECLLPADCEKSIDLKPLQDAITNCNVLLTERKKVEFKSRDLVQD LGRIIRGPVEPVRDLVSQFDYALGALGALVSYAELLADDTNYGNYTIEKYSLDRYMRLDS AAVRALNIAEAKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ AFVEDPELRQGLRYQLKRMSDIDRLTHALRKRTANLQPVVKLYQSCIRVSYIKNVLQQYD GSFSALIRTKFLNSLDEWLTEDRFGRFASLVETAIDLDQLENGEYRISPRYSSDLAVLKD ELSEVENHINNLHKHTAADLDLTIDKQLKLEKGQLGHVFRISKKDEQKVRKKLTSNYIII ETRKDGVKFTSSKLKKLGDQYQALLGEYTSCQKKVVDDVVRVSASFSEVFENFAAILSEL DVLQSFADLATSSPIPYVRPEITASEEGDIILEGSRHPCLEAQDGVNFIPNDCTLVREKS WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGV STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT HFHELTALGHKSGDEHQHVPNLGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA EFANFPEAVVALAKSKAEELEDFSTAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARARLL LEELASLPLDEMDGTKAAETVTKLKSDFEKDAADNPWLQQFL

Transcript Sequence

Transcript ID	Os05t0274200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:11189467:11198038:1 gene:Os05g0274200 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MSH2 (MUS1). (Os05t0274200-01)
Sequence	ACTGCCCCCTAAAACACTAACCCTTTTCCCGCCCCACCCCGCCCGCGCGTACCTACGCAT TTCGTCGAACACATCGCCTGCGTCCCCCATCGCCACCACCTCGCCCGATCCAGCCCGGCG ATCTGCGGCGGGATGGAGGGCGACGACTTCTTGCCGGAGGGCGGCAAGCTCCCCGAGCTC AAGCTAGATGCGAGGCAAGCGCAGGGCTTCATCTCTTTCTTCAAGAAACTGCCGCAGGAT TCGAGGGCTATTCGTCTCTTCGATCGGCGGGATTATTACACTGCTCATGGAGAGAATGCC ACATTCATTGCAAAAATATACTATCACACAATGTCTGCCTTACGCCAATTAGGTAGCAAC TCTGATGGACTCTCAAGTGTCAGTGTGAGCAAGACTATGTTTGAGACCATCGCCCGCAAC CTTTTGTTAGAGAGGACAGACCGTACATTGGAACTCTATGAGGGAAGTGGGTCTAGTTGG AGGTTAACAAAATCTGGAACACCTGGAAATATTGGCAGTTTTGAAGATATTCTGTTTGCA AACAATGACATGCAAGATTCTCCGGTAACTGTTGCATTGTTTCCTGTGTTCCAGGAAGGA CAACTATATGTAGGTCTTAGTTTTGTTGATTTGACAAACAGGAAGCTTGGGTTGTCTGAG TTTCCCGAAGATAGTCGATTCACAAATGTAGAGTCAGCCCTTGTTGCATTAGGTTGCAAG GAGTGTCTTCTCCCAGCAGATTGTGAGAAATCTATAGATTTGAAGCCTCTTCAGGATGCT ATCACTAACTGCAATGTTCTATTAACTGAAAGAAAGAAGGTTGAATTTAAATCCAGAGAT CTTGTGCAGGATCTTGGTAGAATAATCAGAGGTCCTGTTGAGCCAGTTCGTGATCTTGTA TCTCAGTTTGACTATGCATTGGGTGCCCTTGGAGCTCTAGTTTCATATGCTGAGTTGCTA GCAGATGATACAAACTACGGAAATTACACAATTGAGAAATACAGTTTGGACCGCTACATG CGTCTTGATTCTGCTGCTGTGCGAGCATTGAATATTGCCGAAGCTAAAACTGATGTAAAC AAGAACTTCAGTTTGTTTGGTTTGATGAACAGAACCTGTACAGTAGGTATGGGAAAGAGA CTGCTTAACAGATGGCTGAAACAACCTCTGCTAGATGTAAATGAAATCAATAACAGATTA GATATGGTTCAGGCTTTCGTAGAAGATCCAGAGCTTCGTCAGGGACTTAGGTACCAACTC AAAAGAATGTCGGACATTGACCGTCTGACACATGCTCTGCGGAAGAGAACAGCCAATCTG CAGCCTGTTGTCAAGCTCTACCAGTCCTGCATTAGAGTCTCATACATCAAGAATGTTCTT CAACAATATGATGGCAGTTTTTCTGCGCTGATAAGGACAAAGTTTCTTAATTCTTTAGAT GAGTGGCTGACAGAGGATAGGTTTGGTAGGTTTGCTTCTCTTGTTGAGACAGCTATTGAC CTTGATCAACTTGAGAATGGTGAGTATAGGATATCTCCCCGATATTCTTCTGATTTGGCT GTGCTGAAGGATGAGCTTTCTGAAGTTGAAAATCACATCAACAATTTGCACAAGCATACA GCTGCTGATCTGGATCTTACTATTGATAAGCAATTGAAGCTAGAAAAAGGGCAGCTTGGC CATGTGTTCAGAATCTCAAAGAAAGATGAACAGAAGGTTAGGAAGAAACTCACTAGCAAT TACATAATCATAGAAACTCGTAAGGATGGTGTGAAGTTCACAAGCTCCAAGCTTAAAAAG TTAGGCGACCAATACCAGGCACTGCTTGGTGAGTACACAAGTTGTCAGAAAAAGGTTGTT GATGATGTAGTAAGAGTTTCAGCCTCCTTCTCAGAGGTATTTGAAAACTTTGCTGCGATA CTATCTGAGTTGGATGTTTTACAAAGTTTTGCTGATTTAGCAACAAGTTCCCCAATTCCT TATGTAAGACCAGAAATCACAGCATCGGAGGAAGGAGATATCATTTTAGAAGGTAGCAGA CATCCTTGTCTGGAGGCCCAAGATGGTGTTAACTTTATACCAAATGATTGCACTTTGGTG AGAGAAAAAAGTTGGTTTCAGATCATCACTGGGCCAAACATGGGTGGAAAGTCCACTTTT ATACGACAGGTTGGTGTGAATGTCCTGATGGCACAAGTTGGATCGTTCGTTCCATGTGAT CGGGCGAGCATTAGTGTGAGAGATTGTATTTTTGCTCGTGTTGGTGCTGGTGATTGCCAG CTACGTGGTGTTTCAACCTTTATGCAAGAAATGCTTGAAACAGCATCCATCTTGAAAGGT GCATCGGACAAGTCTCTTATTATTATTGATGAGTTGGGGCGTGGAACTTCCACATATGAT GGATTTGGTCTTGCATGGGCTATCTGTGAGCATCTTGTGGAAGTGACTAGAGCACCTACG TTGTTTGCCACGCATTTTCATGAATTAACTGCATTAGGACACAAAAGTGGTGATGAGCAC CAACACGTTCCAAATTTGGGAATTGCAAATTACCATGTGGGTGCACATATAGACCCATCA AGTCGGAAGTTAACTATGCTTTATAAGGTTGAACCCGGTGCATGTGACCAAAGCTTTGGT ATCCACGTTGCAGAATTCGCTAATTTTCCAGAAGCTGTTGTTGCTCTTGCAAAAAGCAAA GCAGAAGAATTAGAAGATTTTTCAACTGCGCCCAATTTTTCCGATGATTCAAAAGATGAG GTTGGATCAAAACGCAAGAGGGTATTTAGCCCAGACGATGTGACTAGAGGAGCTGCTCGC GCTCGCCTTTTGTTGGAGGAATTGGCCTCATTGCCTCTAGACGAGATGGATGGCACCAAG GCCGCAGAAACCGTCACCAAACTGAAATCCGACTTCGAGAAAGATGCAGCTGATAATCCT TGGCTTCAGCAGTTCCTTTGAAGGAAATCATTCACTGCTTGAATGGAGATTTTGTTTTGC AAGTTAGAATCACTGAAAGTAAGGCTGATGCAAGGATCATCTGATCCTCTTTTTGTCCAT ATCCATCAGCAGATTACCATATATGTAAATTATCTAGGCTTAGCATCAGATCTATGCTAT GGAAAATGATCTGCCAACTGCCAAGTGCTTCAGCTAGCACACTGCGAGTAAACATAGCCA CTGTATCTGTACGTATTATCTTGAGGTAAAGCAATTGATGAGCTTGTCTTGCACCAATGA TTCACTTGATCCTTCACAGGATACAAGGAAAAAAAAGTTGGCAAGACTAGCCCAAAAGCA TC