Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0269500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:10847834:10854702:-1 gene:Os05g0269500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP2A description:Generative cell specific-1, HAP2-GCS1 domain containing protein. (Os05t0269500-01)
Sequence	ATGCCTCGTCGTCGAGGAACCCCTCTCCCTACTATCCTCCTCCTCCTCGCGTTCGTCGGC GGCGCATGCGGAACGGAGATCCTCTCCAAGTCCCGCCTCGAGAGCTGCTCCCACGACTCG GATGCCGGCGGCCGCCTCAAGTGCGACCGGAAGCTCGTCGTCGACCTGGCCGTCCCCAGC GGCGCCAGCGGCGGCGAGGCGTCGCTGGTGGCGCGGGTGGCCGGGGTGGAGGAAGAGAAC GACACGCCATCGGCGACGAAGAGCATCCGGGATCCCCCCGTCATCACCGTCAGCAAGTCC GCCACCTACGCGCTCTACGCCCTCACCTACCTCGACAGGGATGTTGCTTACAGGCCTGAC GAGAAGTATGTCAAAACACACAAATGTGAACCATATGCCGGTGCTAAAGTTGTTGGAGAG TGTGAAAGGTTATGGGATGAGAAAGGCAATGTAATCAAGCAAACAGAGCCTATTTGCTGT CCATGTGGGCCTCACCGTGTACAATCGAAATGTGGAGACATATGGTCTAAACTGACCAAA GGAAAAGCTAATACGGCTCACTGTGTGCGATTTCCAGGCGACTGGTTCCATGTATTCGGA ATTGGAGCATGGTCACTTCGGTTCAGTATCAGAGTACAAGTGAAGAAAGGATCTTCTGTA TGGGATGTTGTTGTTGGTCCAGAGAATAAAACTGTTGTTTCTGGAGATAACTTTCTGAGA GTAAAAGTTGTTGGTGATTATACTGGTTATACAAGTATCCCATCATTTGAGGACAACTAT CTTGTGACTCCACGGAAGGGTACTGGTAGTAGTCAGCCACAAGACCTTGGTAATGAACAT TCCAAATGGATGATATTGGACAGAGTTCGTTTTACACTAGACGGGCTTGAATGTGACAAG ATTGGTGTTGGTTATGAGGCTTATCGAAACCAACCTAATTTCTGTTCAGCACCATATGGG AGCTGCCTGGGAAACCAGCTTTGGAACTTCTGGGAGTATGACAAAAGACGGATCGACAAC AGCCAACTGCCCCTATATATTGTGGAAGGAAGATTTCAGAGGATTAATCAACATCCAAAT GCAGGTGCTCATACATTTTCTGTGGGTGTCACAGAAGATCTTAATACCAATTTACTGATA GAGTTGATGGCTGATGATATAGAATACGTCTATCAGAGGAGTCCAGCAAAGATAATTGAC ATTCGCGTTCCAACATTTGAAGCCTTAAGCCAAGTTGGTATAGCAAATGTCACTACTAAA AATATTGGTAAACTGGAGTCTTCATATAGCTTGACGTTTAAATGCTCAAGTGGTATCAGT CCTGTGGAGGAGCAGCTCTATACCATGAAACCTGATGAAGTGATTGCCCGATCATTTGAG TTGCGTTCAACAACAGATCAAGCAGCAATGCATCAATGTGAAGCTATTCTGAAGGCATCA GACTTTAGTGAACTTGACAGAGAAGGATACCGTTTCTCTACCGCAGCTACGGTTTATAAC AATGGAGCACAGATCGGTCCAACGAATGACCACAAGAAAGGCGGCTTCTGGGATTCCATC AAAGCTTTGTGGCGTAACCTGATCGATTTCCTTACTGGCAGATTGTGCTGGACCAAATGC CCGAGATTGTTCGACTTCGGCTGCCATATTCAGTACGTATGCATCGGCTGGATCCTACTG CTTCTCCTGATACCCGCAGCTGTGGTTTTCCTGTGGCTTCTGCATCAGGAAGGCTTGTTC GACCCGCTGTACGACTGGTGGGGGCTGGAGCCGGACGACGACTACCGCGCGCGCCGACGG CACCAGAAAGGGCGGCACCACCGGCACCATCACGACCACCGGCACCGTCACGGCCACAGC CACGGCGACCACCACCACCACTACCACGGCGGGCACCACCAGAGGCGCAGGCACCACCAC CCACCAGCGTGGGATGTGGAAGGCCACCACCACGACAGGCAGCAGCACAGCCACGAAGCG GGGCGCAACCACCACCGTGGCTACGGCGAGGTGGTGGCCGCGGGCGCGGCGCCGCTGCGT TTGGACAGGGCGAGCCGGCCGGGCCAGACGGAGGTCGACGCCGTGGTGGAGTACAGGGAG CGGAGGAGCCGCCACGAGAGGCACGGCGGGCACGGGCACCGCGACGGCCACTACTCCCCG TCTGTGTAA

Peptide Sequence

PEP ID	Os05t0269500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:10847834:10854702:-1 gene:Os05g0269500 transcript:Os05t0269500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP2A description:Generative cell specific-1, HAP2-GCS1 domain containing protein. (Os05t0269500-01)
Sequence	MPRRRGTPLPTILLLLAFVGGACGTEILSKSRLESCSHDSDAGGRLKCDRKLVVDLAVPS GASGGEASLVARVAGVEEENDTPSATKSIRDPPVITVSKSATYALYALTYLDRDVAYRPD EKYVKTHKCEPYAGAKVVGECERLWDEKGNVIKQTEPICCPCGPHRVQSKCGDIWSKLTK GKANTAHCVRFPGDWFHVFGIGAWSLRFSIRVQVKKGSSVWDVVVGPENKTVVSGDNFLR VKVVGDYTGYTSIPSFEDNYLVTPRKGTGSSQPQDLGNEHSKWMILDRVRFTLDGLECDK IGVGYEAYRNQPNFCSAPYGSCLGNQLWNFWEYDKRRIDNSQLPLYIVEGRFQRINQHPN AGAHTFSVGVTEDLNTNLLIELMADDIEYVYQRSPAKIIDIRVPTFEALSQVGIANVTTK NIGKLESSYSLTFKCSSGISPVEEQLYTMKPDEVIARSFELRSTTDQAAMHQCEAILKAS DFSELDREGYRFSTAATVYNNGAQIGPTNDHKKGGFWDSIKALWRNLIDFLTGRLCWTKC PRLFDFGCHIQYVCIGWILLLLLIPAAVVFLWLLHQEGLFDPLYDWWGLEPDDDYRARRR HQKGRHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEA GRNHHRGYGEVVAAGAAPLRLDRASRPGQTEVDAVVEYRERRSRHERHGGHGHRDGHYSP SV

Transcript Sequence

Transcript ID	Os05t0269500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:10847834:10854702:-1 gene:Os05g0269500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP2A description:Generative cell specific-1, HAP2-GCS1 domain containing protein. (Os05t0269500-01)
Sequence	GGCTTCTCTCAACTACTGTTTGCTTCGCCGCCGTCGCTGGCGGCAAACCGCCATGCCTCG TCGTCGAGGAACCCCTCTCCCTACTATCCTCCTCCTCCTCGCGTTCGTCGGCGGCGCATG CGGAACGGAGATCCTCTCCAAGTCCCGCCTCGAGAGCTGCTCCCACGACTCGGATGCCGG CGGCCGCCTCAAGTGCGACCGGAAGCTCGTCGTCGACCTGGCCGTCCCCAGCGGCGCCAG CGGCGGCGAGGCGTCGCTGGTGGCGCGGGTGGCCGGGGTGGAGGAAGAGAACGACACGCC ATCGGCGACGAAGAGCATCCGGGATCCCCCCGTCATCACCGTCAGCAAGTCCGCCACCTA CGCGCTCTACGCCCTCACCTACCTCGACAGGGATGTTGCTTACAGGCCTGACGAGAAGTA TGTCAAAACACACAAATGTGAACCATATGCCGGTGCTAAAGTTGTTGGAGAGTGTGAAAG GTTATGGGATGAGAAAGGCAATGTAATCAAGCAAACAGAGCCTATTTGCTGTCCATGTGG GCCTCACCGTGTACAATCGAAATGTGGAGACATATGGTCTAAACTGACCAAAGGAAAAGC TAATACGGCTCACTGTGTGCGATTTCCAGGCGACTGGTTCCATGTATTCGGAATTGGAGC ATGGTCACTTCGGTTCAGTATCAGAGTACAAGTGAAGAAAGGATCTTCTGTATGGGATGT TGTTGTTGGTCCAGAGAATAAAACTGTTGTTTCTGGAGATAACTTTCTGAGAGTAAAAGT TGTTGGTGATTATACTGGTTATACAAGTATCCCATCATTTGAGGACAACTATCTTGTGAC TCCACGGAAGGGTACTGGTAGTAGTCAGCCACAAGACCTTGGTAATGAACATTCCAAATG GATGATATTGGACAGAGTTCGTTTTACACTAGACGGGCTTGAATGTGACAAGATTGGTGT TGGTTATGAGGCTTATCGAAACCAACCTAATTTCTGTTCAGCACCATATGGGAGCTGCCT GGGAAACCAGCTTTGGAACTTCTGGGAGTATGACAAAAGACGGATCGACAACAGCCAACT GCCCCTATATATTGTGGAAGGAAGATTTCAGAGGATTAATCAACATCCAAATGCAGGTGC TCATACATTTTCTGTGGGTGTCACAGAAGATCTTAATACCAATTTACTGATAGAGTTGAT GGCTGATGATATAGAATACGTCTATCAGAGGAGTCCAGCAAAGATAATTGACATTCGCGT TCCAACATTTGAAGCCTTAAGCCAAGTTGGTATAGCAAATGTCACTACTAAAAATATTGG TAAACTGGAGTCTTCATATAGCTTGACGTTTAAATGCTCAAGTGGTATCAGTCCTGTGGA GGAGCAGCTCTATACCATGAAACCTGATGAAGTGATTGCCCGATCATTTGAGTTGCGTTC AACAACAGATCAAGCAGCAATGCATCAATGTGAAGCTATTCTGAAGGCATCAGACTTTAG TGAACTTGACAGAGAAGGATACCGTTTCTCTACCGCAGCTACGGTTTATAACAATGGAGC ACAGATCGGTCCAACGAATGACCACAAGAAAGGCGGCTTCTGGGATTCCATCAAAGCTTT GTGGCGTAACCTGATCGATTTCCTTACTGGCAGATTGTGCTGGACCAAATGCCCGAGATT GTTCGACTTCGGCTGCCATATTCAGTACGTATGCATCGGCTGGATCCTACTGCTTCTCCT GATACCCGCAGCTGTGGTTTTCCTGTGGCTTCTGCATCAGGAAGGCTTGTTCGACCCGCT GTACGACTGGTGGGGGCTGGAGCCGGACGACGACTACCGCGCGCGCCGACGGCACCAGAA AGGGCGGCACCACCGGCACCATCACGACCACCGGCACCGTCACGGCCACAGCCACGGCGA CCACCACCACCACTACCACGGCGGGCACCACCAGAGGCGCAGGCACCACCACCCACCAGC GTGGGATGTGGAAGGCCACCACCACGACAGGCAGCAGCACAGCCACGAAGCGGGGCGCAA CCACCACCGTGGCTACGGCGAGGTGGTGGCCGCGGGCGCGGCGCCGCTGCGTTTGGACAG GGCGAGCCGGCCGGGCCAGACGGAGGTCGACGCCGTGGTGGAGTACAGGGAGCGGAGGAG CCGCCACGAGAGGCACGGCGGGCACGGGCACCGCGACGGCCACTACTCCCCGTCTGTGTA AGGGATGGCTCTGACAGTCTGACGCATCTAGTGTACGTGGGATTGACATTTGAGTATTCA CCAGCGATCTCGTGGTGGACTTTTCAGTCAGTTCTTGACATTGACGTTTGCCTTGTACTA AAGCCAACGTGGACTTTTAATACCCTCCGTTTTTTAATAGATGACGCAGTTGACTTTTTT C