Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0248200-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:8981788:8982953:1 gene:Os05g0248200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 18 protein. (Os05t0248200-01)
Sequence

ATGGCGCTCCGACGCCACGCGGCACTTCTCTCCTTGGCAGTAGTACTACTGTTCGCCGGC
CTCGCCGCCGCGTCGCCGACGTCCCAGAACACCGGCGACACCGTGATCTTTTGGGGACGG
AACAAGGACGAGGGCTCCCTCAGGGAGGCCTGCGATACCGGCCTCTACACCACCGTCATC
ATTTCCTTCCTCAGCGCCTTTGGCTACAAGCCCGGGTACTACAAGGTCGACATCTCCGGC
CACCCGGTCTCCGCCGTCGGCCCCGACATCAAGTACTGCCAATCCAAGGGCATACTCATC
CTCCTCGCCATCGGCGGCCAAGGCGGCGAGTATTCCCTCCCGACCCCACAGGCGGCCGTT
GAGCTGAATGACCACCTCTGGTACTCCTACCTCGGCGGCCACCGCAACGGCGTCTATCGC
CCGTTCGGCGACGCCATCGTCAACGGCATCGACTTCTTCATCGACCAGGGCGGCAGGGAG
AACTACAACAAGCTAGCCAAGCTGCTCTACGCGCACAACAAGGACTACCGCGGCACGGTC
GGGGTGATGCTGACGGCGACGACGCGGTGCGAGTACCCGGACCACCGGCTGGATGAGGCG
CTGGCGACGGGGCTCTTCCACCGCATCCACGTCAAGAAATTCAGCGATGGCCGGTGCCCG
GCATCGTCCTGGATACAGTCGTTCCAGAAGTGGGCGAAGATGTACCCGCAGAGCCGTGTC
CTGGTCGGCGTCGTGGCCTCGCGGGAGGTGGACAGGGAGGCCTACATCTCGCCAGAGGAC
CTCAAGAAATTGATGCAGTACGTCTTCAGCAAGCTGCCCAACTTCGGAGGCGTCATGGTC
TGGGACAGGTTCTACGACGAGAAGACCGGCTTCACGGGTCGCCTGCGAGCGTAA

Peptide Sequence

PEP ID

Os05t0248200-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:8981788:8982953:1 gene:Os05g0248200 transcript:Os05t0248200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 18 protein. (Os05t0248200-01)
Sequence

MALRRHAALLSLAVVLLFAGLAAASPTSQNTGDTVIFWGRNKDEGSLREACDTGLYTTVI
ISFLSAFGYKPGYYKVDISGHPVSAVGPDIKYCQSKGILILLAIGGQGGEYSLPTPQAAV
ELNDHLWYSYLGGHRNGVYRPFGDAIVNGIDFFIDQGGRENYNKLAKLLYAHNKDYRGTV
GVMLTATTRCEYPDHRLDEALATGLFHRIHVKKFSDGRCPASSWIQSFQKWAKMYPQSRV
LVGVVASREVDREAYISPEDLKKLMQYVFSKLPNFGGVMVWDRFYDEKTGFTGRLRA

Transcript Sequence

Transcript ID

Os05t0248200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:8981788:8982953:1 gene:Os05g0248200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 18 protein. (Os05t0248200-01)
Sequence

ACACCTAGCTCGCTCGATCATTTCATTTCTCGAGGCAGGCAAGCTAGCTAAGATTCGATC
AATGGCGCTCCGACGCCACGCGGCACTTCTCTCCTTGGCAGTAGTACTACTGTTCGCCGG
CCTCGCCGCCGCGTCGCCGACGTCCCAGAACACCGGCGACACCGTGATCTTTTGGGGACG
GAACAAGGACGAGGGCTCCCTCAGGGAGGCCTGCGATACCGGCCTCTACACCACCGTCAT
CATTTCCTTCCTCAGCGCCTTTGGCTACAAGCCCGGGTACTACAAGGTCGACATCTCCGG
CCACCCGGTCTCCGCCGTCGGCCCCGACATCAAGTACTGCCAATCCAAGGGCATACTCAT
CCTCCTCGCCATCGGCGGCCAAGGCGGCGAGTATTCCCTCCCGACCCCACAGGCGGCCGT
TGAGCTGAATGACCACCTCTGGTACTCCTACCTCGGCGGCCACCGCAACGGCGTCTATCG
CCCGTTCGGCGACGCCATCGTCAACGGCATCGACTTCTTCATCGACCAGGGCGGCAGGGA
GAACTACAACAAGCTAGCCAAGCTGCTCTACGCGCACAACAAGGACTACCGCGGCACGGT
CGGGGTGATGCTGACGGCGACGACGCGGTGCGAGTACCCGGACCACCGGCTGGATGAGGC
GCTGGCGACGGGGCTCTTCCACCGCATCCACGTCAAGAAATTCAGCGATGGCCGGTGCCC
GGCATCGTCCTGGATACAGTCGTTCCAGAAGTGGGCGAAGATGTACCCGCAGAGCCGTGT
CCTGGTCGGCGTCGTGGCCTCGCGGGAGGTGGACAGGGAGGCCTACATCTCGCCAGAGGA
CCTCAAGAAATTGATGCAGTACGTCTTCAGCAAGCTGCCCAACTTCGGAGGCGTCATGGT
CTGGGACAGGTTCTACGACGAGAAGACCGGCTTCACGGGTCGCCTGCGAGCGTAACTGGT
CGCGACATTTGAAGCCCGTTAATTCCTTACTATGAGATCAATAAAAAAGCTTTTGTGGAG
TACTCCACAAATAAAGTCATGTAATAATAAATAAACATATTGTGTATACTATAAAGATTT
GTGTGTTGGGTAATGTATGTAATCAATAAATAAAGCGAGGTACGATGATACCTCGAGTAA
AATAAATAAAGAGCTTTGAGATTAAT