Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0247900-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:8966122:8973308:-1 gene:Os05g0247900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CSB description:DEAD-like helicase, N-terminal domain containing protein. (Os05t0247900-01)
Sequence	ATGTCGCTCCACAGCCTCAAAGAAACCCTCCAGTCTTCCTCCTTTTCACAGCCCCAATCC GAGTCCCAACCCCGATCACCTCCTCCTCTCCTCGCCAGGAGGCCCCCAAAAACGTCCCTC TCGCAGCAGCTCCTCCGCCTTGATGCCTCCTCCTCCTCTTCCTCCTTTTCCGTCTCGCCG CCACCGCCCCCTCGCACTTCCCCGACCTCGGATGCGGCGGCGGATGATGCGCCGCCGCTG CCAGAGGAGGAGGACGAGGTCCCCTGCATCCGCCCCCGCGCTTCCCTTCCGCCAGCGGCC TCCCTCGACTCCCGCGGGCCCTACGAACCGCTTGCTCTCTCGCCGCCCGGAGAGCGCCCC GTCGTCCAGGTACCCTCCTCGATAAATTGCAGGCTACTTGTGCATCAGAGGGATGGTGTA AGATTCTTATACAATCTGTATAGAAACAACCATGGCGGTGTGCTTGGAGATGACATGGGT TTGGGAAAGACTATCCAAACAATTGCTTTCTTATCAGCTGTTATTGGAAAAGATAATGAC CACGGTGATCAATTAGTGGAAGGAAGAAAGATTGCCCCTATACTCATCCTCTGCCCCACA TCAGTAATTCGAAACTGGGAAAATGAATTTGCAGAGTGGGCAAGATGTTCTGTTGCTGTC TATCATGGCCCAAATCGTGACCTGGTTCTTCAAAAGGTTGAAACTCAAAGACTAGAGATA GTTATTACCAGTTTTGACACTTTTAGGATTCATGGCAAGATTTTGTGTGGCATCTCGTGG GACCTTGTGGTTGTTGATGAGGCACACCGGCTGAAGAATGAAAAATCAAAGTTATATACA GCTTGCTTGGAAATTACTACTCGAAAGCGGTTTGGTCTCACAGGAACCATAATGCAAAAT AAAATAATGGAATTATTTAATCTGTTTGACTGGATTGTACCTGGTTGCTTGGGGGATCGA GAACACTTTCGAGTATATTATGACGAGCCTTTAAAACATGGCCAGAGGTTCAGTGCTCCT GAGAGATTTGTACAAGTTGCTGATAAGCGCAAGAAGCACCTTGTTTCAGTTCTTAGCAAA TTTCTGTTGAGAAGAACAAAGGAAGAGACCATTGGGCATCTCATGCTTGGAAAGGAGGAT AATATTGTTTTCTGCAGAATGAGTGACGTTCAAAAGCGCGTTTACAGAAGAATGCTGCAA CAGCCTGACGTGCAAATCCTTATAAACAAGGATCTCCCATGTAGCTGTGGAAGTCCTTTG ACTCAGGTGGAATGCTGCAAGAGAACTGAACCACATGGCATTATCTGGTCTTATCTTCAC AGAGACAATCCAGAGGGTTGTTCTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGG AAGCTTCAGCAGATCAGTAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATT GAGAAGCAGAAGAAAGATGCTGAGCTTGCAGCTGCTGTCTTTGACACAGATATTGAATTA GTTGGTGGAGGTGCTAAAAGTGAAAACTTCATGGGTCTCAGTGATGCAGAACATTGTGGA AAGATGCGTGCGTTGGAAAGACTATTGTCATTATGGACTCTGCAGGGTGACAAAATTCTT CTTTTCAGCTATTCAGTCAGGATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGT TACTGCTTTTCTCGCTTTGATGGAACGACTCCCATGAATGCACGCCAATTACTAATTGAT GAGTTCAATAGATGCCCAAGCAAACAGGTTTTCCTTATATCTACACGGGCAGGAAATTTA GGTGTCAACCTGGTCAGTGCTAATCGTGTGGTGATTTTTGACCCAAGTTGGAACCCTGCG CAAGACTTGCAAGCGCAAGACAGGTCATTTCGATTTGGACAGAGGCGGCATGTCACTGTA TTTCGCCTACTTGGTGCTGGTTCCCTTGAAGAGCTTATTTATTCTCGACAAATATATAAG CAACAGCTTTCCAATATTGCGGTCTCTGGAAAAATAGAAAAACGTTACTTTGAAGGAGTG CAGGATGACAAAAAATTTCAAGGTGAGCTCTTTGGGATATGCAATCTGTTTCGCGACTTG TCTGATAAGCTTTTCACCAGTGAGATCATTGAAATGCATGGAGAACATGGGAAGGGTAAT ACAGCTGAAACAATAGGAATTCGAGAAATAGTTGATACAAATATATTTGGTACGCAAGAT CAAATGAAATCCTCAATGACAGCAATACATAACGAGAACAAGAATTTGTACCATTGTGGA ATAGTTTATGCTCACCGAAATGAAGATGTTGTAAACACGAGGACAAATGAAGCAAGCAAC TGTGCAGAAGATAAAACTGTCCCAAGGCACTTAGAGGAGCTGCAAAGTAAGAAGAATGAA ACAATGCATACAATTAAGGCAAAATCTTACTCACTGGTGCAGAAAAAGAAGGAATTCAGC CGAATTGCATCTTTCATGGGTATGAACGACCTTGAGTTTAGTAAGTGGTTGCTGTCTGTC TCGCCTTTGCAACGACATGAAGTATTGGACCGCTACAGGAATGCAAAGTAA

Peptide Sequence

PEP ID	Os05t0247900-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:8966122:8973308:-1 gene:Os05g0247900 transcript:Os05t0247900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CSB description:DEAD-like helicase, N-terminal domain containing protein. (Os05t0247900-01)
Sequence	MSLHSLKETLQSSSFSQPQSESQPRSPPPLLARRPPKTSLSQQLLRLDASSSSSSFSVSP PPPPRTSPTSDAAADDAPPLPEEEDEVPCIRPRASLPPAASLDSRGPYEPLALSPPGERP VVQVPSSINCRLLVHQRDGVRFLYNLYRNNHGGVLGDDMGLGKTIQTIAFLSAVIGKDND HGDQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLVLQKVETQRLEI VITSFDTFRIHGKILCGISWDLVVVDEAHRLKNEKSKLYTACLEITTRKRFGLTGTIMQN KIMELFNLFDWIVPGCLGDREHFRVYYDEPLKHGQRFSAPERFVQVADKRKKHLVSVLSK FLLRRTKEETIGHLMLGKEDNIVFCRMSDVQKRVYRRMLQQPDVQILINKDLPCSCGSPL TQVECCKRTEPHGIIWSYLHRDNPEGCSLCPFCLVLPCLGKLQQISNHLELIKPNLKDEI EKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDKIL LFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAGNL GVNLVSANRVVIFDPSWNPAQDLQAQDRSFRFGQRRHVTVFRLLGAGSLEELIYSRQIYK QQLSNIAVSGKIEKRYFEGVQDDKKFQGELFGICNLFRDLSDKLFTSEIIEMHGEHGKGN TAETIGIREIVDTNIFGTQDQMKSSMTAIHNENKNLYHCGIVYAHRNEDVVNTRTNEASN CAEDKTVPRHLEELQSKKNETMHTIKAKSYSLVQKKKEFSRIASFMGMNDLEFSKWLLSV SPLQRHEVLDRYRNAK

Transcript Sequence

Transcript ID	Os05t0247900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:8966122:8973308:-1 gene:Os05g0247900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CSB description:DEAD-like helicase, N-terminal domain containing protein. (Os05t0247900-01)
Sequence	GCCAAGCAACGCCATGTCGCTCCACAGCCTCAAAGAAACCCTCCAGTCTTCCTCCTTTTC ACAGCCCCAATCCGAGTCCCAACCCCGATCACCTCCTCCTCTCCTCGCCAGGAGGCCCCC AAAAACGTCCCTCTCGCAGCAGCTCCTCCGCCTTGATGCCTCCTCCTCCTCTTCCTCCTT TTCCGTCTCGCCGCCACCGCCCCCTCGCACTTCCCCGACCTCGGATGCGGCGGCGGATGA TGCGCCGCCGCTGCCAGAGGAGGAGGACGAGGTCCCCTGCATCCGCCCCCGCGCTTCCCT TCCGCCAGCGGCCTCCCTCGACTCCCGCGGGCCCTACGAACCGCTTGCTCTCTCGCCGCC CGGAGAGCGCCCCGTCGTCCAGGTACCCTCCTCGATAAATTGCAGGCTACTTGTGCATCA GAGGGATGGTGTAAGATTCTTATACAATCTGTATAGAAACAACCATGGCGGTGTGCTTGG AGATGACATGGGTTTGGGAAAGACTATCCAAACAATTGCTTTCTTATCAGCTGTTATTGG AAAAGATAATGACCACGGTGATCAATTAGTGGAAGGAAGAAAGATTGCCCCTATACTCAT CCTCTGCCCCACATCAGTAATTCGAAACTGGGAAAATGAATTTGCAGAGTGGGCAAGATG TTCTGTTGCTGTCTATCATGGCCCAAATCGTGACCTGGTTCTTCAAAAGGTTGAAACTCA AAGACTAGAGATAGTTATTACCAGTTTTGACACTTTTAGGATTCATGGCAAGATTTTGTG TGGCATCTCGTGGGACCTTGTGGTTGTTGATGAGGCACACCGGCTGAAGAATGAAAAATC AAAGTTATATACAGCTTGCTTGGAAATTACTACTCGAAAGCGGTTTGGTCTCACAGGAAC CATAATGCAAAATAAAATAATGGAATTATTTAATCTGTTTGACTGGATTGTACCTGGTTG CTTGGGGGATCGAGAACACTTTCGAGTATATTATGACGAGCCTTTAAAACATGGCCAGAG GTTCAGTGCTCCTGAGAGATTTGTACAAGTTGCTGATAAGCGCAAGAAGCACCTTGTTTC AGTTCTTAGCAAATTTCTGTTGAGAAGAACAAAGGAAGAGACCATTGGGCATCTCATGCT TGGAAAGGAGGATAATATTGTTTTCTGCAGAATGAGTGACGTTCAAAAGCGCGTTTACAG AAGAATGCTGCAACAGCCTGACGTGCAAATCCTTATAAACAAGGATCTCCCATGTAGCTG TGGAAGTCCTTTGACTCAGGTGGAATGCTGCAAGAGAACTGAACCACATGGCATTATCTG GTCTTATCTTCACAGAGACAATCCAGAGGGTTGTTCTCTGTGCCCCTTCTGTCTTGTTCT TCCTTGCCTTGGGAAGCTTCAGCAGATCAGTAACCATCTGGAGCTGATAAAGCCAAACCT GAAAGACGAAATTGAGAAGCAGAAGAAAGATGCTGAGCTTGCAGCTGCTGTCTTTGACAC AGATATTGAATTAGTTGGTGGAGGTGCTAAAAGTGAAAACTTCATGGGTCTCAGTGATGC AGAACATTGTGGAAAGATGCGTGCGTTGGAAAGACTATTGTCATTATGGACTCTGCAGGG TGACAAAATTCTTCTTTTCAGCTATTCAGTCAGGATGCTTGACATACTAGAGAAATTTCT TATACGGAAGGGTTACTGCTTTTCTCGCTTTGATGGAACGACTCCCATGAATGCACGCCA ATTACTAATTGATGAGTTCAATAGATGCCCAAGCAAACAGGTTTTCCTTATATCTACACG GGCAGGAAATTTAGGTGTCAACCTGGTCAGTGCTAATCGTGTGGTGATTTTTGACCCAAG TTGGAACCCTGCGCAAGACTTGCAAGCGCAAGACAGGTCATTTCGATTTGGACAGAGGCG GCATGTCACTGTATTTCGCCTACTTGGTGCTGGTTCCCTTGAAGAGCTTATTTATTCTCG ACAAATATATAAGCAACAGCTTTCCAATATTGCGGTCTCTGGAAAAATAGAAAAACGTTA CTTTGAAGGAGTGCAGGATGACAAAAAATTTCAAGGTGAGCTCTTTGGGATATGCAATCT GTTTCGCGACTTGTCTGATAAGCTTTTCACCAGTGAGATCATTGAAATGCATGGAGAACA TGGGAAGGGTAATACAGCTGAAACAATAGGAATTCGAGAAATAGTTGATACAAATATATT TGGTACGCAAGATCAAATGAAATCCTCAATGACAGCAATACATAACGAGAACAAGAATTT GTACCATTGTGGAATAGTTTATGCTCACCGAAATGAAGATGTTGTAAACACGAGGACAAA TGAAGCAAGCAACTGTGCAGAAGATAAAACTGTCCCAAGGCACTTAGAGGAGCTGCAAAG TAAGAAGAATGAAACAATGCATACAATTAAGGCAAAATCTTACTCACTGGTGCAGAAAAA GAAGGAATTCAGCCGAATTGCATCTTTCATGGGTATGAACGACCTTGAGTTTAGTAAGTG GTTGCTGTCTGTCTCGCCTTTGCAACGACATGAAGTATTGGACCGCTACAGGAATGCAAA GTAAGCCATAGGGAGTATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCAC CGATGTTTTCCTTCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAG GCTATCAGAAGGGGAGGAACATTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTT CTTCATTTATTGCATTTGTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTG ACATAAATCGCTGTTTCTCCTGCTGGTTCTCTGGATTTGGGCGCTTGTATCTTTGTTGGT CGGCTGAGTAAAGCTTTTAGAGTTACCACGGAGTTCTGAGTGCATCTCAAACAGAAAGAA GCTGTGCTGGTTAGTGGTTACAATGTACAAATGATACGAGCATAGCAGGTCATGTATCAT GCATGCAAATAATTCACCCGTTATCCGACTTTTCCCGAGACATAATATTGTAGCTGATCG CCAGCGGCACACCAAGGTCTGGCGTTGTGGCAATGTTGTAACAGAGAGTGCAGGCTGTTA ATACATCCCTTGATTATGCATCT