Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0240200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:8526412:8535211:-1 gene:Os05g0240200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-115 description:Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-01);Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-02);Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-03)
Sequence	GGGAGAAGATCAAGTCTCTCACGGGAGCTCGATGTCGTGCACGCCGTCCTCCGCAAGATC GGCGATGTGCCATCGGAGCAGGTCGATGAGCTGGTCAAGCTTTGGGCGCGCGATGTCAGG GAGGCATCCTACGAAATGGAGGACATCGTCGACACATTCTTGGTGCACGACGATGGCCCT GACCCCACCGATCCACACATGCTCCTGCGCCTCCGGAAGAAGTTAGGCAAGCTGTTCAAG AAGAGCAAGGCTCGCCGTAAGATCTCTAACCTGATCCAAGACATTAACAAGAAGTTCGAG CAGGTGAAAGCAAGGCATGTCAAGTACACAGTCGACAGCGTTGTCCTCAAGTCTCTAGCG GCAACGACCATCGATCCTCGTCTCCAGAATCTGTACAAAAGGGCAACAGAGCTTGTTGGC ATTGACGGGCCAAGGGACGATCTCATAAACAAGCTATCCCTGGGGGGTGATGTTGATGTG TCCGACAAGAAGATGAAAGTCATCTCTGTCGTTGGATTTGGAGGACTCGGCAAGACCACT CTTGCCAAAGCTGTCTATGACCACTTCAAACCGCATTTCAAGTGCAGGGCTTCTGTTCCA GTCGACCAGAATCCTGACATGAATAAAGCATTCGATGACCAGGTTGAACCGCATTTCGAA TGCGGAGCTTTTGTTCCAGTGGGTCGGAATCCTGACATGAAGAAAGTCTTTAGAGACATT CTCATTGATCTTGACAAGGAAAAGTACACGAATCCGAATATGATGGTGTTGGATGAAAAG CAGCTCATGGACGAACTCAAGGAATTCGTCAAGGAGAAGAGGTGTTTCATTGTTATTGAT GATATATGGGACAAGGAGTCATGGAAATTAATCAGATGTGCTCTGCAAGAAAGTGATTGT GGAAGTAGACTTGTCATAACTACTCGTATTTCTGAAGTTGCCACACATGCTGGTGAAGCT TACAAAATTCAGCCACTTTCTCGTGATAACTCTGAAAAATTATTGTATGCAAGAATAGTT GATGGTGAATGGAAGTATTTCGATAATCCATCAGCTAAGGCATGTGAAAAAATTTTGAAG AAATGTGGTGGTGTACCATTAGCTATCATTACAATAGCTAGTTTGTTGGCCAGTAAACCA GGGGAGGACTGGTCTGAGGTCTACAACTCTGTCGGTTTTGGGCATGAAGACAATGATGAT GTAGGTAATACTAGAAGGATATTGTCTTTTAGCTACTATGATCTGTCTTCACATTTAAAA GATTGCTTATTGTATCTATGTGTATTTCCCGAAGATCATGTGATAGAGAAAAATAGTTTG ATATGGAAGTGGATAGCTGAAGGTTTCATCCATGAGGAACTAGCAGCAGGGTTAGGATTA TTTGAGCTCGGGGAGAGGTGCTTCAATGAGTTGATAAATAGAAGCATGATCCAGCCAGTG GAGACAAAACATGAAGGGTATGTAGATGGTTGCTGCGTTCATGATATGGTTCTTGATATG ATCCACTCATTATCGAGTGAAGAAAATTTTGTCACTGTATTGAATGGTGATGAGCGACAG AAACTTCCGGGGAGCATTGCTCGCAGGTTAGCCCTGCAGCGTGTTCTAGTGCACAAGGAT GGTCAGCTAGCTAATATCACTCTGAAGAATGTGAGATCCCTTATTGCCAGTCAGTGCTTC GGTTCATTATGCCTACACACTCCGGTTTTACGTGTATTAGATGTGATAAACTGTGCAGAA AGTGAGACGCCTAATGTTTTGGAAGATAGGGACAAAACTATGCCAAGCCATCTTGGGAGT TTACTTCACCTGAGGTACCTCGGGTTAGTAGATACATATATCACTAAGCTGCCCAGGGAA GTAAGGTATCTCAAGTTTCTGCAGACACTGGATTTAAGGGGAAGTCGCATAAAGGAGCTG CCAGAGGAGGTGGGACTGCTGACACAACTTGTTTGCCTACGAGCTGATTGGGAAATAATG GTGAAGATTGGTTTGATCGGTAAGTTGACCTCATTGCAAGAGCTTTGGATAGAGCCTGCT GCTGCTGTTTATGATGACGATGCTGCTTCTGTTGATGATGATGATGATGCTGCTGCTGTT GATGATACTACGAAGTCTACGATGAAGTTTGTGAATGAGCTGGGCCTACTGAGGGAACTA AGGGTGCTCCGGACTTATTTTGAGGATTTGAATGAGAGCATGGAGAGAGCTTTGTTGGAA TCCCTAAGCAAGCTGCACAATATCCGGGACCTGCACATTGAGGGCCCACCCCTAGTGACA AGGAGAGTGACAAGCAGTGCAAGATCTGTCTCCTGCCTGCATCTCCGATACCTGTGTCTG AATTGCTTTGTGTTCTCTGGACTGCCAGCATGGATTAAATCATCGCTTGCTCCGAACCTC TCCTGTCTGGATGTGGTTGTGCTAATTGTGAAAGAGCAGGACATGGAAACCCTTGCGAGG TTGCCAGAGCTCCGCTGCCTTGTGCTGCGTTTGCATGAGACCGAATTGGTTAGCATAAAG ATTCATACTGAAGATGTTGGCTACTTTCGGAAGTTGAGAATCTTAAGGATACTTGGTACA TCTATCTGGTTTGATCTGCACGGCAGCAAGTGCAACATCACAGACAATAGAAGCTTAGCA TCTATTATCATGCCAAGTCTTGAATTCCTCGAGTTTGCTGTCCATATGCGGTTCCTGAAA GATGCAACCCAGCTTGGTTTTGACAAGCTGCTTAGCTTCGAGAAGCTTGGAAGAAGTTCG CTCCAGAAAGTCACCATAGTACTGAAATGTGGAGATGCCCGTCTGTCAGAGGTGGAGGAA GTGGCTGCTGCATTGATGAACTCAGCTGCGGTCCATCCCAAACACCCAACTGTTCAAACC AAATGGCAAGACGAACAAGCTGTGCTCTCACCCTACCAAGAGGCATATATGCATGTGAGC AGAACCCCGGAGTTGGTAAATGAGGCCTGGAAGGCGAACATTGTTAGCTCTGGCCGTATT CGAGCACTGCGTATGCCAGTTACAGAAGCATCTTCAAGCAAAGTTATCTGTCTGCTTTAT AGAAAAAGTGGGAAGGGACTTTTAGCTCTCAGCTCAAATGCTGTTCATAAGCTGTGGAAA TGGGAGAGCAATGACAAGAATCCTGCTGGCATGGTTAGACAGGAGAACTAA

Peptide Sequence

PEP ID	Os05t0240200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:8526412:8535211:-1 gene:Os05g0240200 transcript:Os05t0240200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-115 description:Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-01);Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-02);Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-03)
Sequence	GRRSSLSRELDVVHAVLRKIGDVPSEQVDELVKLWARDVREASYEMEDIVDTFLVHDDGP DPTDPHMLLRLRKKLGKLFKKSKARRKISNLIQDINKKFEQVKARHVKYTVDSVVLKSLA ATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLGKTT LAKAVYDHFKPHFKCRASVPVDQNPDMNKAFDDQVEPHFECGAFVPVGRNPDMKKVFRDI LIDLDKEKYTNPNMMVLDEKQLMDELKEFVKEKRCFIVIDDIWDKESWKLIRCALQESDC GSRLVITTRISEVATHAGEAYKIQPLSRDNSEKLLYARIVDGEWKYFDNPSAKACEKILK KCGGVPLAIITIASLLASKPGEDWSEVYNSVGFGHEDNDDVGNTRRILSFSYYDLSSHLK DCLLYLCVFPEDHVIEKNSLIWKWIAEGFIHEELAAGLGLFELGERCFNELINRSMIQPV ETKHEGYVDGCCVHDMVLDMIHSLSSEENFVTVLNGDERQKLPGSIARRLALQRVLVHKD GQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETPNVLEDRDKTMPSHLGS LLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEIM VKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGLLREL RVLRTYFEDLNESMERALLESLSKLHNIRDLHIEGPPLVTRRVTSSARSVSCLHLRYLCL NCFVFSGLPAWIKSSLAPNLSCLDVVVLIVKEQDMETLARLPELRCLVLRLHETELVSIK IHTEDVGYFRKLRILRILGTSIWFDLHGSKCNITDNRSLASIIMPSLEFLEFAVHMRFLK DATQLGFDKLLSFEKLGRSSLQKVTIVLKCGDARLSEVEEVAAALMNSAAVHPKHPTVQT KWQDEQAVLSPYQEAYMHVSRTPELVNEAWKANIVSSGRIRALRMPVTEASSSKVICLLY RKSGKGLLALSSNAVHKLWKWESNDKNPAGMVRQEN

Transcript Sequence

Transcript ID	Os05t0240200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:8526412:8535211:-1 gene:Os05g0240200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-115 description:Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-01);Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-02);Similar to NB-ARC domain containing protein, expressed. (Os05t0240200-03)
Sequence	CTACTCACTCACTCCCCTGCTGCTTTGCGTTAGCCATCCGGAGTGACTTCCATTCCGGTC TCACAGAAGTCAACCAACCCCTTCCAGGGGCTGGATCTGGCCGGCGAGCGGCAGGGACAG CAGAGCTGCGCGTCCCTCCTGCTTCAGGCCAAGAGGAGGCGGCGGATCTGGGGCGGGCGG GCCTTCCTTGCTGTCTACGACAGGCTTGTTCCCGACCCCCAGTTTGCAAGCATGGAGCTG GCGACGGGGGCGATGAGGAGCCTGCTGCCCAAGCTGCTTCAGCTGCTCGAGAAAGAGTAC GGCCTGCAAACGGGCGTGAGGGAGAAGATCAAGTCTCTCACGGGAGCTCGATGTCGTGCA CGCCGTCCTCCGCAAGATCGGCGATGTGCCATCGGAGCAGGTCGATGAGCTGGTCAAGCT TTGGGCGCGCGATGTCAGGGAGGCATCCTACGAAATGGAGGACATCGTCGACACATTCTT GGTGCACGACGATGGCCCTGACCCCACCGATCCACACATGCTCCTGCGCCTCCGGAAGAA GTTAGGCAAGCTGTTCAAGAAGAGCAAGGCTCGCCGTAAGATCTCTAACCTGATCCAAGA CATTAACAAGAAGTTCGAGCAGGTGAAAGCAAGGCATGTCAAGTACACAGTCGACAGCGT TGTCCTCAAGTCTCTAGCGGCAACGACCATCGATCCTCGTCTCCAGAATCTGTACAAAAG GGCAACAGAGCTTGTTGGCATTGACGGGCCAAGGGACGATCTCATAAACAAGCTATCCCT GGGGGGTGATGTTGATGTGTCCGACAAGAAGATGAAAGTCATCTCTGTCGTTGGATTTGG AGGACTCGGCAAGACCACTCTTGCCAAAGCTGTCTATGACCACTTCAAACCGCATTTCAA GTGCAGGGCTTCTGTTCCAGTCGACCAGAATCCTGACATGAATAAAGCATTCGATGACCA GGTTGAACCGCATTTCGAATGCGGAGCTTTTGTTCCAGTGGGTCGGAATCCTGACATGAA GAAAGTCTTTAGAGACATTCTCATTGATCTTGACAAGGAAAAGTACACGAATCCGAATAT GATGGTGTTGGATGAAAAGCAGCTCATGGACGAACTCAAGGAATTCGTCAAGGAGAAGAG GTGTTTCATTGTTATTGATGATATATGGGACAAGGAGTCATGGAAATTAATCAGATGTGC TCTGCAAGAAAGTGATTGTGGAAGTAGACTTGTCATAACTACTCGTATTTCTGAAGTTGC CACACATGCTGGTGAAGCTTACAAAATTCAGCCACTTTCTCGTGATAACTCTGAAAAATT ATTGTATGCAAGAATAGTTGATGGTGAATGGAAGTATTTCGATAATCCATCAGCTAAGGC ATGTGAAAAAATTTTGAAGAAATGTGGTGGTGTACCATTAGCTATCATTACAATAGCTAG TTTGTTGGCCAGTAAACCAGGGGAGGACTGGTCTGAGGTCTACAACTCTGTCGGTTTTGG GCATGAAGACAATGATGATGTAGGTAATACTAGAAGGATATTGTCTTTTAGCTACTATGA TCTGTCTTCACATTTAAAAGATTGCTTATTGTATCTATGTGTATTTCCCGAAGATCATGT GATAGAGAAAAATAGTTTGATATGGAAGTGGATAGCTGAAGGTTTCATCCATGAGGAACT AGCAGCAGGGTTAGGATTATTTGAGCTCGGGGAGAGGTGCTTCAATGAGTTGATAAATAG AAGCATGATCCAGCCAGTGGAGACAAAACATGAAGGGTATGTAGATGGTTGCTGCGTTCA TGATATGGTTCTTGATATGATCCACTCATTATCGAGTGAAGAAAATTTTGTCACTGTATT GAATGGTGATGAGCGACAGAAACTTCCGGGGAGCATTGCTCGCAGGTTAGCCCTGCAGCG TGTTCTAGTGCACAAGGATGGTCAGCTAGCTAATATCACTCTGAAGAATGTGAGATCCCT TATTGCCAGTCAGTGCTTCGGTTCATTATGCCTACACACTCCGGTTTTACGTGTATTAGA TGTGATAAACTGTGCAGAAAGTGAGACGCCTAATGTTTTGGAAGATAGGGACAAAACTAT GCCAAGCCATCTTGGGAGTTTACTTCACCTGAGGTACCTCGGGTTAGTAGATACATATAT CACTAAGCTGCCCAGGGAAGTAAGGTATCTCAAGTTTCTGCAGACACTGGATTTAAGGGG AAGTCGCATAAAGGAGCTGCCAGAGGAGGTGGGACTGCTGACACAACTTGTTTGCCTACG AGCTGATTGGGAAATAATGGTGAAGATTGGTTTGATCGGTAAGTTGACCTCATTGCAAGA GCTTTGGATAGAGCCTGCTGCTGCTGTTTATGATGACGATGCTGCTTCTGTTGATGATGA TGATGATGCTGCTGCTGTTGATGATACTACGAAGTCTACGATGAAGTTTGTGAATGAGCT GGGCCTACTGAGGGAACTAAGGGTGCTCCGGACTTATTTTGAGGATTTGAATGAGAGCAT GGAGAGAGCTTTGTTGGAATCCCTAAGCAAGCTGCACAATATCCGGGACCTGCACATTGA GGGCCCACCCCTAGTGACAAGGAGAGTGACAAGCAGTGCAAGATCTGTCTCCTGCCTGCA TCTCCGATACCTGTGTCTGAATTGCTTTGTGTTCTCTGGACTGCCAGCATGGATTAAATC ATCGCTTGCTCCGAACCTCTCCTGTCTGGATGTGGTTGTGCTAATTGTGAAAGAGCAGGA CATGGAAACCCTTGCGAGGTTGCCAGAGCTCCGCTGCCTTGTGCTGCGTTTGCATGAGAC CGAATTGGTTAGCATAAAGATTCATACTGAAGATGTTGGCTACTTTCGGAAGTTGAGAAT CTTAAGGATACTTGGTACATCTATCTGGTTTGATCTGCACGGCAGCAAGTGCAACATCAC AGACAATAGAAGCTTAGCATCTATTATCATGCCAAGTCTTGAATTCCTCGAGTTTGCTGT CCATATGCGGTTCCTGAAAGATGCAACCCAGCTTGGTTTTGACAAGCTGCTTAGCTTCGA GAAGCTTGGAAGAAGTTCGCTCCAGAAAGTCACCATAGTACTGAAATGTGGAGATGCCCG TCTGTCAGAGGTGGAGGAAGTGGCTGCTGCATTGATGAACTCAGCTGCGGTCCATCCCAA ACACCCAACTGTTCAAACCAAATGGCAAGACGAACAAGCTGTGCTCTCACCCTACCAAGA GGCATATATGCATGTGAGCAGAACCCCGGAGTTGGTAAATGAGGCCTGGAAGGCGAACAT TGTTAGCTCTGGCCGTATTCGAGCACTGCGTATGCCAGTTACAGAAGCATCTTCAAGCAA AGTTATCTGTCTGCTTTATAGAAAAAGTGGGAAGGGACTTTTAGCTCTCAGCTCAAATGC TGTTCATAAGCTGTGGAAATGGGAGAGCAATGACAAGAATCCTGCTGGCATGGTTAGACA GGAGAACTAAATTATTTTGATTTCAACAGCGCAGTTCTGTTTGGTTGTTTTCTTAAAACC ATCACTACTTTTTGTTAGTCCACCACATCTGTCCCACCTCAAGTGTGGCAACCGGAAAGT GACATTCTAATGAATGACACTGCTAATGGCAACCCTGAAGAAGCAGCTGCCTGCAGTCTA CTATCCAAAAATGACTGCTATCTAATTTCTGCATCTGGTGGCAAAGTTTCGTTGTTCAAC ATGTTAAATTTCAAGACCATGACTACTTTCATAGCACCTCCACCCTCTGCAACTTTCCTC GCATTCCACCCGCATGACAATAACATCATAGCTATTGGAACGGATGACTCTTCGATTCTA CTCTACAATATCCGTGTTGACGAGGTTAAATGGGTGCTCAAGGGCCATCAGAAAAAGATA ACTGGACTGGTATTCTCGCTATCAATGAATGTGCTTGTATCTTCAGGTGCTGATTCTCAG GTGTAAATTCTAATATATATCAAAGATTTTTGGACTGGCAATTTTGTTGTTTATTGAATG GATGCTGAGTTAAATCTATGTGTTTGGAGTATGGAAGATTGGGCGAAGAAGAAATCCAGA TATATCCAACCTCCATCTAATCATTCTGGAGCTTTAGTTGGTGATATAATGGTGCAGTTT CACTATGACCAAAAGCGCCTTTTAGTAGTTCATGAGAGCCAATTGGCGATCTACGATGAG GAGCTAGAATGCTTGTGCTCATGGTTCCCAAGTGATCCACTCTCTGCTCCAGTTTCGAGT GCAGTATACTCATCGGATGGCTTATTGATCTACGCTGGATTCTGTGATGGTGCAATTGGA ATATTTCAAGTGGAATCTCTCATGTTACAGTGCAGGATTGCACCTTCTGCCTATATACCA TCTTCAGTTTCTAGCGGTGGTGAAATTGTGTATCCCATGGTTGTCGCTGCGCATCCCTGG AAGCCTAACCAGTTTGCAGTCGGCATGAGCGATGGTGCAGTTCATGTGCTGGAGCCGTTG GACACACCCGATGATATCATCAGCAATTCAATTCAGCAGGGGCGTTTTGGTGACAGCGGA TGATGTGTGGACAGGGTGCTCAATACGGTTGGCAGGCTGGATGGCAATACTTGCTTGGCC TATGGTGATAGATTATTTTTTTCGCCAGCCGGTTAAGAAAGCAGACCAAATTTCATCAAG GGAAGAAGTACTTACTACAAACTAGAAAGCAAACTGGAAAGGTAGCCCGCGTGAATGCGC GGGCATGCTTGTTATTTTGTTTAAAAACAGGTCTACCAAAATAAGTTTAAATTAATGTTA GGTATTTCCCTTTTTAATTGATTGTTCATTGTTTTTTTAAAAAAAAAATCTTGAGAAACT CGTATTGCTCATAAATGTATTTTTTTCCCT