Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0230700-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:7950946:7954304:1 gene:Os05g0230700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA17 description:Similar to Auxin-responsive protein IAA17. (Os05t0230700-01);Similar to Auxin-responsive protein IAA17. (Os05t0230700-02);Similar to Auxin-responsive protein IAA17. (Os05t0230700-03)
Sequence	ATGTCGCCCCCACTCGAGCTCGACTACATAGGCCTCTCGCCGCCGGTGCCCGCCGCCGCC GATGCCGCCGCCGACAACGACCTGAAGGGCACCGAGCTCCGCCTCGGCCTGCCCGGCTCC CACTCGCCGGACCGCTCCCCGCCCGCCGCCACGCTCGACCTTCTCCCCGCTGCCAAGGGC GCCAAGCGCGGGTTCTCCGACGAGGCGCGTCCGCTGCCGGCGTCCGCCGCCGCCGCCGCC GCCGCCGGGAAGGGCAAGAAGGCGGCGGCCGGCGAGGAGGATGAGGATGCGGAGGAGGAG GACAAGAAGGTCGCCGCCGCGCCGCAGGCGCCTGCTGCCAAGGCTCAGGTGGTTGGATGG CCACCAATTCGCAGCTACCGCAAGAACACGATGGCTACTAACCAGCTGAAGAGCAGCAAG GAGGATGCTGAAGCGAAGCAGGGCCAGGGGTTCCTGTACGTCAAGGTCAGCATGGATGGT GCCCCCTACCTCAGGAAGGTGGACCTCAAGACCTACAAGAACTACAAGGACCTGTCAACT GCGCTTGAGAAGATGTTCATTGGCTTCACAACTGGCAAGGATGGCTTATCTGAGAGCCGC AAGGATGGTGAATATGTGCTGACTTATGAAGACAAGGATGGAGACTGGATGCTTGTTGGC GATGTTCCATGGGAGATGTTTGCCAACTCTTGTCGCAGACTCAGGATCATGAAAGGTTCA GATGCAATTGGACTTGCTCCAAGGGCAGTTGATAAGTCCAAAAACCGCAACTAG

Peptide Sequence

PEP ID	Os05t0230700-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:7950946:7954304:1 gene:Os05g0230700 transcript:Os05t0230700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA17 description:Similar to Auxin-responsive protein IAA17. (Os05t0230700-01);Similar to Auxin-responsive protein IAA17. (Os05t0230700-02);Similar to Auxin-responsive protein IAA17. (Os05t0230700-03)
Sequence	MSPPLELDYIGLSPPVPAAADAAADNDLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKG AKRGFSDEARPLPASAAAAAAAGKGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGW PPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLST ALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGS DAIGLAPRAVDKSKNRN

Transcript Sequence

Transcript ID	Os05t0230700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:7950946:7954304:1 gene:Os05g0230700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA17 description:Similar to Auxin-responsive protein IAA17. (Os05t0230700-01);Similar to Auxin-responsive protein IAA17. (Os05t0230700-02);Similar to Auxin-responsive protein IAA17. (Os05t0230700-03)
Sequence	GTGGCTCGCTGGACACAACACACACCCACACCCACTCCCCCACTCTCTCTCCGGTTCATG TCCTGCTGCTCCCCATGTCGCCCCCACTCGAGCTCGACTACATAGGCCTCTCGCCGCCGG TGCCCGCCGCCGCCGATGCCGCCGCCGACAACGACCTGAAGGGCACCGAGCTCCGCCTCG GCCTGCCCGGCTCCCACTCGCCGGACCGCTCCCCGCCCGCCGCCACGCTCGACCTTCTCC CCGCTGCCAAGGGCGCCAAGCGCGGGTTCTCCGACGAGGCGCGTCCGCTGCCGGCGTCCG CCGCCGCCGCCGCCGCCGCCGGGAAGGGCAAGAAGGCGGCGGCCGGCGAGGAGGATGAGG ATGCGGAGGAGGAGGACAAGAAGGTCGCCGCCGCGCCGCAGGCGCCTGCTGCCAAGGCTC AGGTGGTTGGATGGCCACCAATTCGCAGCTACCGCAAGAACACGATGGCTACTAACCAGC TGAAGAGCAGCAAGGAGGATGCTGAAGCGAAGCAGGGCCAGGGGTTCCTGTACGTCAAGG TCAGCATGGATGGTGCCCCCTACCTCAGGAAGGTGGACCTCAAGACCTACAAGAACTACA AGGACCTGTCAACTGCGCTTGAGAAGATGTTCATTGGCTTCACAACTGGCAAGGATGGCT TATCTGAGAGCCGCAAGGATGGTGAATATGTGCTGACTTATGAAGACAAGGATGGAGACT GGATGCTTGTTGGCGATGTTCCATGGGAGATGTTTGCCAACTCTTGTCGCAGACTCAGGA TCATGAAAGGTTCAGATGCAATTGGACTTGCTCCAAGGGCAGTTGATAAGTCCAAAAACC GCAACTAGAATGGTTTCTGCCCCACAGTCAAAAGCAAGATGGAGATCAAATGACTGTAGG GAATTTTCTGAAAACCAAGAAGTCTAACAGTTTTAAGATGGAGTCTGCCTTATGGTCTGT ACTACATGGTTTGCTATTGTGAAAGTTAAAAAAAAAGGTGTCTTGTTATGTTAGCTTCGC CAAATCTCCTAGGGACATAAACTCTATTTGATTGTGCCCAAGTCTTTGTACGTGTGTTAA TGCTATTCGTGTAAATGGTTTGGACACCATGTGCTACTGCTATGATTGAGCACCCCTACC TACTTTGC