Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0220600-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:7418022:7422194:-1 gene:Os05g0220600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 12, RHOMBOID 12 description:Peptidase S54, rhomboid domain containing protein. (Os05t0220600-01)
Sequence

ATGGCGGCGCAGCAGCTGCTGCTCCTCCTCCCACTCCCGCTACCTTCCAGAACCTTCTCG
AAGCCCCTCCCCTCCCTTCCCATTCCCCTCCCCGCCCTCCGCCTCTCCTCCTCCGCCTAC
GCCGCCCGCCGCCGCGACCTGCTCCGCTCGCTCCGCTGCGGGATGAGGCGCTCAGACTTG
GTGGCGGACCTGGAGCTTGCCAAGGACAAGCAGTGGCAGGGGAGGCGTCCCAATGGCATT
TTCTGGATCTTGCTGCTCAATGTTGGAATCTATGTCGCTGACCACTTGTTCCAGATTGAA
CATATAAAGGCAATGTACTTGTACCATGCTTTCCCTAGTTGGTTTCAGTTTGTGACATCA
ACATTTTGCCATGCGAACTGGAATCATCTTTCAAGCAATCTATTCTTTGTATACATTTTT
GGAAAGCTAGTTGAGGAGGAAGAAGGTAGTTTTGCATTGTGGATGTCTTACATTTTGACT
GGTGCTGGATCAAACTTAATTTCATGGTTGGTTCTTCCAACATCTTCCGTGTCACTTGGA
GCATCTGGTGCTGTTTTTGGCCTTTTCACAATCAGTGTTCTAGTGAAGATGTCATGGGAC
TGGAGAAAGATTCTTGAGGTCCTTATCCTTGGTCAATTTGTTGTTGACAAGGTCATGGAA
GCCGCACGGGCAACTACTGTTACAGGGCACTCGCTGCAAGTAAACAATATTGCCCATCTA
TCTGGTGCTTTGATCGGTGCTGCATTAGTGTTCCTGATAAATCGTATCCCTTTTCCATCT
GATGGTGATAGTTCAAAATCTTCAAAGGATACCAGAGAAAAAAGAAGCTAA

Peptide Sequence

PEP ID

Os05t0220600-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:7418022:7422194:-1 gene:Os05g0220600 transcript:Os05t0220600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 12, RHOMBOID 12 description:Peptidase S54, rhomboid domain containing protein. (Os05t0220600-01)
Sequence

MAAQQLLLLLPLPLPSRTFSKPLPSLPIPLPALRLSSSAYAARRRDLLRSLRCGMRRSDL
VADLELAKDKQWQGRRPNGIFWILLLNVGIYVADHLFQIEHIKAMYLYHAFPSWFQFVTS
TFCHANWNHLSSNLFFVYIFGKLVEEEEGSFALWMSYILTGAGSNLISWLVLPTSSVSLG
ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKVMEAARATTVTGHSLQVNNIAHL
SGALIGAALVFLINRIPFPSDGDSSKSSKDTREKRS

Transcript Sequence

Transcript ID

Os05t0220600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:7418022:7422194:-1 gene:Os05g0220600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 12, RHOMBOID 12 description:Peptidase S54, rhomboid domain containing protein. (Os05t0220600-01)
Sequence

AGCAAGAGAAGAACATCCAAGCGAAGAAGGTGGGGAAGAGAAGAAACAATGGCGGCGCAG
CAGCTGCTGCTCCTCCTCCCACTCCCGCTACCTTCCAGAACCTTCTCGAAGCCCCTCCCC
TCCCTTCCCATTCCCCTCCCCGCCCTCCGCCTCTCCTCCTCCGCCTACGCCGCCCGCCGC
CGCGACCTGCTCCGCTCGCTCCGCTGCGGGATGAGGCGCTCAGACTTGGTGGCGGACCTG
GAGCTTGCCAAGGACAAGCAGTGGCAGGGGAGGCGTCCCAATGGCATTTTCTGGATCTTG
CTGCTCAATGTTGGAATCTATGTCGCTGACCACTTGTTCCAGATTGAACATATAAAGGCA
ATGTACTTGTACCATGCTTTCCCTAGTTGGTTTCAGTTTGTGACATCAACATTTTGCCAT
GCGAACTGGAATCATCTTTCAAGCAATCTATTCTTTGTATACATTTTTGGAAAGCTAGTT
GAGGAGGAAGAAGGTAGTTTTGCATTGTGGATGTCTTACATTTTGACTGGTGCTGGATCA
AACTTAATTTCATGGTTGGTTCTTCCAACATCTTCCGTGTCACTTGGAGCATCTGGTGCT
GTTTTTGGCCTTTTCACAATCAGTGTTCTAGTGAAGATGTCATGGGACTGGAGAAAGATT
CTTGAGGTCCTTATCCTTGGTCAATTTGTTGTTGACAAGGTCATGGAAGCCGCACGGGCA
ACTACTGTTACAGGGCACTCGCTGCAAGTAAACAATATTGCCCATCTATCTGGTGCTTTG
ATCGGTGCTGCATTAGTGTTCCTGATAAATCGTATCCCTTTTCCATCTGATGGTGATAGT
TCAAAATCTTCAAAGGATACCAGAGAAAAAAGAAGCTAATTTATTCTCCATTGTCCAAAT
TAAAACGGCCACTCTAACAAAATTAACCCAATGCATTTTACTTTCCTTGATAGTTCTTTG
TGTGCAAAGTCAGCTTAGTTCTGGTTTCTATTTGAAAAGAAGTCCTATGGAAGCTTAAGT
TCCACTTACGATACCTCGGAATCATTTCAAGGGCTAAGTGTACTGCTGTTCCCAAAAGGA
ATAAAAGAAATAAAGATTATCACTTTCTTGTGTCCGAGAAATTATGTAGTGAGGCTTCCA
GCCGTTATCAGACAGGACATTTTGATTTGGCATTGTGTCCAGTGAATCTCATAGCTGGAG
AGAATCACATCCCTTTGCATGGACTACTGTTCTGTATATGTCTTGGTTTGCAGTCCAGAA
TTATGATCTGTATAAGATTAAGAATATTAGCTCTTGCTGTACTTCTTCTCAAGGAAATAA
AAGAGCAAATTTC