Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0212900-00
CDS Infomation	cds chromosome:IRGSP-1.0:5:6991465:6993662:-1 gene:Os05g0212900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chalcone synthase, polyketide synthase 6 description:Similar to Chalcone synthase J (EC 2.3.1.74) (Naringenin-chalcone synthase J). (Os05t0212900-00)
Sequence	ATGCCTGGAGCAGCTGCTGCCGCTGTTGTTGACAGCCGCCTGTGCACACAGCACGCGGAA GGCCCTGCTGCGGTCCTCGCCATCGGCACTGCAAACCCGGCAAATATCGTCTATCAAGAT GGGTTTGCCGACTACTACTTTGGTCTAACCAAGAGCGAGCATCTTATTGAGCTGAAGGAC AAAATGAAGAGGATATGTCACAGATCGGGAATAGAGAAACGCTACATCCACCTTGATGAC AAGCTCATCTGTGAGCACCCGGAGATCATCGACAAACACATGCCCTCCCTTGAAACTCGT GTAGACATCGTCTCTACTGAGGTCCCGAAGCTCGCCGAGTCAGCCACACGGAAGGCCATC GCCGAGTGGGGCCGTCCGGCCATTGACATTACGCACCTCATCTTCAGCACCTACTCCGGG TGCAGTGCTCCTAGCGCTGACCTCAAGCTGGCATCACTACTCGGCCTCAACCCTTCTGTT TCTCGCACCATCCTTAGCCTCCACGGTTGCTCTGGAGGCGGTAGGGCACTTCAACTTGCC AAGGAGCTCACCGAGAACAACCGTGATGCACGCGTTCTCGTAGCCTGTGCCGAGCTGACG CTAATATGCTTCTCAAACCCAGATGAAAGCAAAATTGTCGGCCATGGACTGTTTGGGGAT GGTGCCGGAGCAATCATTGTCGGCGCTGGCCCACTGGTCGATGAAGAGCGCCCACTATTC GAGATGGTCCTCGCCTCGCAAACAACGATACCAAGTACTGAGCATGCACTTGGCATGCAG ACCACCGCCAGTGGCATAGATTTCCACCTCTCTATCCAGGTGCCAACACTGATCAAGGAC AACATCCGGCAGTGCTTGCTTGACACATTCCGATCGGTTGGAAACATGGATCCTAATTGG AATGACCTCTTCTGGGCAGTGCACCCTGGTGGCCGTGCGATCCTTGACAACATAGAAGGC GAGCTTCAGCTGCAACCAGCAAAGCTTGCGGCAAGCCGCCATGTGTTGAACGAGTATGGG AATATGAGCGGCACGACGATCGCGTTTGTTCTTGATGACTTGCGTCGCCGTCGGGAGAAG GAAGGAGATCAGCATCAACAACTTGAGTGGGGAGTAATGCTAGCCTTTGGACCAGGTATC ACAATAGAGGCAATGGTGCTGCGTAACCCACTCTCATGA

Peptide Sequence

PEP ID	Os05t0212900-00
PEP Infomation	pep chromosome:IRGSP-1.0:5:6991465:6993662:-1 gene:Os05g0212900 transcript:Os05t0212900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chalcone synthase, polyketide synthase 6 description:Similar to Chalcone synthase J (EC 2.3.1.74) (Naringenin-chalcone synthase J). (Os05t0212900-00)
Sequence	MPGAAAAAVVDSRLCTQHAEGPAAVLAIGTANPANIVYQDGFADYYFGLTKSEHLIELKD KMKRICHRSGIEKRYIHLDDKLICEHPEIIDKHMPSLETRVDIVSTEVPKLAESATRKAI AEWGRPAIDITHLIFSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCSGGGRALQLA KELTENNRDARVLVACAELTLICFSNPDESKIVGHGLFGDGAGAIIVGAGPLVDEERPLF EMVLASQTTIPSTEHALGMQTTASGIDFHLSIQVPTLIKDNIRQCLLDTFRSVGNMDPNW NDLFWAVHPGGRAILDNIEGELQLQPAKLAASRHVLNEYGNMSGTTIAFVLDDLRRRREK EGDQHQQLEWGVMLAFGPGITIEAMVLRNPLS

Transcript Sequence

Transcript ID	Os05t0212900-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:6991465:6993662:-1 gene:Os05g0212900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chalcone synthase, polyketide synthase 6 description:Similar to Chalcone synthase J (EC 2.3.1.74) (Naringenin-chalcone synthase J). (Os05t0212900-00)
Sequence	ATGCCTGGAGCAGCTGCTGCCGCTGTTGTTGACAGCCGCCTGTGCACACAGCACGCGGAA GGCCCTGCTGCGGTCCTCGCCATCGGCACTGCAAACCCGGCAAATATCGTCTATCAAGAT GGGTTTGCCGACTACTACTTTGGTCTAACCAAGAGCGAGCATCTTATTGAGCTGAAGGAC AAAATGAAGAGGATATGTCACAGATCGGGAATAGAGAAACGCTACATCCACCTTGATGAC AAGCTCATCTGTGAGCACCCGGAGATCATCGACAAACACATGCCCTCCCTTGAAACTCGT GTAGACATCGTCTCTACTGAGGTCCCGAAGCTCGCCGAGTCAGCCACACGGAAGGCCATC GCCGAGTGGGGCCGTCCGGCCATTGACATTACGCACCTCATCTTCAGCACCTACTCCGGG TGCAGTGCTCCTAGCGCTGACCTCAAGCTGGCATCACTACTCGGCCTCAACCCTTCTGTT TCTCGCACCATCCTTAGCCTCCACGGTTGCTCTGGAGGCGGTAGGGCACTTCAACTTGCC AAGGAGCTCACCGAGAACAACCGTGATGCACGCGTTCTCGTAGCCTGTGCCGAGCTGACG CTAATATGCTTCTCAAACCCAGATGAAAGCAAAATTGTCGGCCATGGACTGTTTGGGGAT GGTGCCGGAGCAATCATTGTCGGCGCTGGCCCACTGGTCGATGAAGAGCGCCCACTATTC GAGATGGTCCTCGCCTCGCAAACAACGATACCAAGTACTGAGCATGCACTTGGCATGCAG ACCACCGCCAGTGGCATAGATTTCCACCTCTCTATCCAGGTGCCAACACTGATCAAGGAC AACATCCGGCAGTGCTTGCTTGACACATTCCGATCGGTTGGAAACATGGATCCTAATTGG AATGACCTCTTCTGGGCAGTGCACCCTGGTGGCCGTGCGATCCTTGACAACATAGAAGGC GAGCTTCAGCTGCAACCAGCAAAGCTTGCGGCAAGCCGCCATGTGTTGAACGAGTATGGG AATATGAGCGGCACGACGATCGCGTTTGTTCTTGATGACTTGCGTCGCCGTCGGGAGAAG GAAGGAGATCAGCATCAACAACTTGAGTGGGGAGTAATGCTAGCCTTTGGACCAGGTATC ACAATAGAGGCAATGGTGCTGCGTAACCCACTCTCATGA