Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0209100-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:6752222:6756320:-1 gene:Os05g0209100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 47 protein. (Os05t0209100-01)
Sequence	ATGAGCGGCGGCGGCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGC CGCGGCGCCTACAACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAG GCTCTGTTTACCAATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTG AGTCTTTTAATGGTTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTT GTATCCGGTGAGCTCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAA ATTCGTACATTTTGGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATC TATAGAAACAATTCATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAG AAAGTTAAAGAAGCATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTAT GATGAGCTTATGCCTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACT GTTGTAGATTCTTTAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCA TCAAAATGGATTGAAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTA TTTGAAACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGT GACAAAGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGT CTTTTGGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCA ACTGCTATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGAT GGTTTAAGCAGTACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACA ATATCAGGAGATCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACA CTCCCAACAGTGGAGGGTTTGGTTCCTATTTACATCAATCCCTCCTCTGGTCAATTTAGT GGAGAAAATATTCGATTAGGATCTCGTGGTGACAGTTACTATGAATACCTATTGAAAGTA TGGGTTCAGCAAGAAAGATATCGTGACACTAGTTTGAAGTATCTATTTGAAATGTATACA GAAGCAATGAAAGGGGTCAAGCATCTTCTTGTTCGAAAAACTATTCCAAATGGGCTGGTC TTCGTTGGGGAGCTCCCCTATGGACGAAATAGTGGTTTTAGCCCTAAAATGGATCACCTG GTGTGTTTTCTTCCTGGTACCCTTGCTCTGGGTGCAACGAAGGGTATAACCAAGAAAAAA GCTCTTGAAAATCATTTATTGACTGCGGAAGACATAGACAATCTGCAGCTTGCTGAAGAT TTGGCCAAAACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATT GCTTATTTTCACATTGAGGGTAATTCTGAGGGAGGACCTGATGGTGGGAACAAAAGTTCT CAATATGTTAATGATATCATAATCAAACCTCTGGATCGTCACAATCTTTTACGCCCAGAG ACTGTAGAATCACTATTTGTTTTATATAGAATCACAGAGGATCCGAAGTATAGGGAATGG GGTTGGCAGATTTTTCAGGCTTTTGAGAAGTATACAAGAGTTGATTCTGGTGGCTATACT TCATTGGATGATGTCACAAGCTTGCCCCCACCTAGGAGAGACAAAATGGAAACTTTCTTC CTTGGAGAAACACTGAAATACTTGTATTTGCTGTTTGGTGAAAGCAATATTCTTCCATTA GATAAGTATGTATTCAACACAGAGGCCCATCCACTTCCAATCATTCAGTCTGCACAACAG ATCTCTCATTCGGTATAG

Peptide Sequence

PEP ID	Os05t0209100-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:6752222:6756320:-1 gene:Os05g0209100 transcript:Os05t0209100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 47 protein. (Os05t0209100-01)
Sequence	MSGGGGGSGPLPYSMRDVDGRGAYNNAKFRHRSRLKMASQALFTNSSKYQCGKFTVGKFL SLLMVSGVIYLLVHKSSDGFVSGELHEKVGNTHTKKDFPKIRTFWRKPPRLPPRLPPNEI YRNNSLLLQSPQSEWTLRQKKVKEAFEHAWSGYRNYAMGYDELMPLTRRGIDGLGGLGAT VVDSLDTAIIMGADDVVSEASKWIEDNLMKKLSEKGQVNLFETTIRVLGGLLSAYHLSGG DKARGDSGIPMTSKRANPERLLEVSKDLADRLLLAFTSSPTAIPLSDVVLRDRTAHAAPD GLSSTSEATTLQLEYSYLSTISGDPKYDLEAMKVLEHMRTLPTVEGLVPIYINPSSGQFS GENIRLGSRGDSYYEYLLKVWVQQERYRDTSLKYLFEMYTEAMKGVKHLLVRKTIPNGLV FVGELPYGRNSGFSPKMDHLVCFLPGTLALGATKGITKKKALENHLLTAEDIDNLQLAED LAKTCVEMYFVTSTGLAPEIAYFHIEGNSEGGPDGGNKSSQYVNDIIIKPLDRHNLLRPE TVESLFVLYRITEDPKYREWGWQIFQAFEKYTRVDSGGYTSLDDVTSLPPPRRDKMETFF LGETLKYLYLLFGESNILPLDKYVFNTEAHPLPIIQSAQQISHSV

Transcript Sequence

Transcript ID	Os05t0209100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:6752222:6756320:-1 gene:Os05g0209100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 47 protein. (Os05t0209100-01)
Sequence	CTCTTCTTCTCCCGGATCTCGCGCGCCACGACCCTCCTCCCCCTTCCAGAAGCTTCTCGA AGCTCCGTTCCTCACCACCCCAACCCAATCCCCACTCCCCACTCCCTCCGCGCGGATGAG CGGCGGCGGCGGCGGCTCGGGCCCCCTCCCCTACTCGATGCGCGATGTGGACGGCCGCGG CGCCTACAACAACGCCAAGTTCCGCCACCGATCTCGCCTCAAGATGGCCTCTCAGGCTCT GTTTACCAATAGCAGCAAGTACCAATGTGGAAAGTTCACTGTTGGAAAATTTTTGAGTCT TTTAATGGTTTCTGGCGTAATATACTTACTTGTGCACAAAAGTTCGGATGGTTTTGTATC CGGTGAGCTCCATGAAAAAGTAGGGAATACACATACCAAGAAAGATTTTCCCAAAATTCG TACATTTTGGAGAAAGCCACCAAGGCTGCCGCCACGTCTTCCTCCAAATGAAATCTATAG AAACAATTCATTGCTTCTACAGTCTCCTCAATCTGAATGGACACTCAGACAGAAGAAAGT TAAAGAAGCATTTGAACATGCATGGTCTGGCTATCGAAATTATGCAATGGGTTATGATGA GCTTATGCCTTTAACCCGCCGAGGTATAGATGGACTAGGAGGTCTAGGCGCTACTGTTGT AGATTCTTTAGACACTGCAATAATAATGGGTGCTGATGATGTTGTTTCCGAAGCATCAAA ATGGATTGAAGATAATCTCATGAAAAAGTTAAGTGAGAAAGGGCAGGTCAATCTATTTGA AACTACTATCCGTGTCTTGGGAGGGCTTCTTAGTGCCTATCACTTGAGTGGTGGTGACAA AGCAAGAGGTGACTCTGGGATACCAATGACATCTAAAAGGGCTAATCCGGAGCGTCTTTT GGAAGTTTCAAAGGACTTGGCAGACAGATTATTGTTAGCCTTTACATCAAGCCCAACTGC TATACCTTTAAGTGATGTTGTTCTTCGAGATCGAACTGCACATGCAGCCCCTGATGGTTT AAGCAGTACCTCTGAGGCTACAACATTGCAGCTGGAGTACAGTTACCTTAGCACAATATC AGGAGATCCAAAGTATGACTTAGAGGCAATGAAAGTGTTAGAGCATATGCGAACACTCCC AACAGTGGAGGGTTTGGTTCCTATTTACATCAATCCCTCCTCTGGTCAATTTAGTGGAGA AAATATTCGATTAGGATCTCGTGGTGACAGTTACTATGAATACCTATTGAAAGTATGGGT TCAGCAAGAAAGATATCGTGACACTAGTTTGAAGTATCTATTTGAAATGTATACAGAAGC AATGAAAGGGGTCAAGCATCTTCTTGTTCGAAAAACTATTCCAAATGGGCTGGTCTTCGT TGGGGAGCTCCCCTATGGACGAAATAGTGGTTTTAGCCCTAAAATGGATCACCTGGTGTG TTTTCTTCCTGGTACCCTTGCTCTGGGTGCAACGAAGGGTATAACCAAGAAAAAAGCTCT TGAAAATCATTTATTGACTGCGGAAGACATAGACAATCTGCAGCTTGCTGAAGATTTGGC CAAAACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTA TTTTCACATTGAGGGTAATTCTGAGGGAGGACCTGATGGTGGGAACAAAAGTTCTCAATA TGTTAATGATATCATAATCAAACCTCTGGATCGTCACAATCTTTTACGCCCAGAGACTGT AGAATCACTATTTGTTTTATATAGAATCACAGAGGATCCGAAGTATAGGGAATGGGGTTG GCAGATTTTTCAGGCTTTTGAGAAGTATACAAGAGTTGATTCTGGTGGCTATACTTCATT GGATGATGTCACAAGCTTGCCCCCACCTAGGAGAGACAAAATGGAAACTTTCTTCCTTGG AGAAACACTGAAATACTTGTATTTGCTGTTTGGTGAAAGCAATATTCTTCCATTAGATAA GTATGTATTCAACACAGAGGCCCATCCACTTCCAATCATTCAGTCTGCACAACAGATCTC TCATTCGGTATAGTTTCCAAGTGTTTTAGTGGGTGTAGTTCCTCTACTATCATGTGAAAA GTGTACTACCATGAGAAAATTTTACCAAACAGATAAAGTGAGAAAATAGTTACGCAGACA AAATTATTGGGACAATGAGAGAAACATACTAGCCTTATAGATGCACATGCTCCCGTTGCA TGAGCTTGAAGCAGCATCAGAGCCGTTCTTGGTAGCAACCTCATGGAGTTGTCAGCTTGA AGCTGCAGTGGCATCATTATTAGAAGCAAGCTCGTGGATGGAGTTATCGTCATAGATTTG GAGATTGTACTTGTATTTATGGGAAGGTCATGAAACTACTCTGATCTGCTGAAAACATAC AATTTTGAATTAGCTTGTGATTACACTGACATTTGTCTTCCAAGAAATCTTCAATCCTTG TGTCAGACATCCCATCATGTTCACAACTTGCTCCCTGCTTACCTGGTGAGTTCAACTAGA TTTGTAAGCTTCTTATCATCTCCAGTTGCTGTTCATTGACAGCATTTTGCATGGTTCATG TTTTTGGCGTGTTTGTGTTATGGTAGTGCTCTACTGTAAGCCTGTAGCAAAATCTCCTAA AAGAACATTGATTTTGAAAATGTCATAATATAGTCAAAGTTCAAGGTGACTATGATTGGC