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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0205050-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:6543376:6544643:-1 gene:Os05g0205050 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isoform 2 of Aquaporin NIP1-3. (Os05t0205050-00)
Sequence

ATGGCTGGAGGAGAGCATGGAGTTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAA
GGCAGCAGAGATCATCAAGCAAGGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGC
TCTAGTAATAACCACCCCATGTTCTCTGTCCAATTCGCGCAGAAGGTGATCGCGGAGATC
TTGGGGACGTTCTTCCTCATCTTCGCGGGGTGCGCGGCGGTGGCGGTGAACAAGAGGACG
GGAGGCACGGTGACGTTCCCGGGGATCTGCATCACGTGGGGGCTCGCCGTGATGGTGATG
GTGTACTCCGTCGGCCACATCTCCGGCGCGCACCTCAACCCGGCGGTCACCCTCGCGTTC
GCCACCTGCGGCAGGTTCCCGTGGCGGCGGGTGCCGGCGTACGCGGCGGCGCAGGTGGCC
GGCTCGGCGGCGGCGAGCGCGGCGCTGCGGGCGCTGTTCGGCGGCGCGCCGGAGCACTTC
TTCGGGACGGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACC
TTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTGTGAGTTTGATC
CTTCTCCAAACCATTCTTGTTCTTGTACGTTTTCCAAACTGTGTTCAA

Peptide Sequence

PEP ID

Os05t0205050-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:6543376:6544643:-1 gene:Os05g0205050 transcript:Os05t0205050-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isoform 2 of Aquaporin NIP1-3. (Os05t0205050-00)
Sequence

MAGGEHGVNGQHEETRAMEEGSRDHQARCENSEQDGGSKSSSNNHPMFSVQFAQKVIAEI
LGTFFLIFAGCAAVAVNKRTGGTVTFPGICITWGLAVMVMVYSVGHISGAHLNPAVTLAF
ATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIIT
FYLMFVVSGVATDNRAVSLILLQTILVLVRFPNCVQ

Transcript Sequence

Transcript ID

Os05t0205050-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:6543376:6544643:-1 gene:Os05g0205050 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isoform 2 of Aquaporin NIP1-3. (Os05t0205050-00)
Sequence

ATGGCTGGAGGAGAGCATGGAGTTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAA
GGCAGCAGAGATCATCAAGCAAGGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGC
TCTAGTAATAACCACCCCATGTTCTCTGTCCAATTCGCGCAGAAGGTGATCGCGGAGATC
TTGGGGACGTTCTTCCTCATCTTCGCGGGGTGCGCGGCGGTGGCGGTGAACAAGAGGACG
GGAGGCACGGTGACGTTCCCGGGGATCTGCATCACGTGGGGGCTCGCCGTGATGGTGATG
GTGTACTCCGTCGGCCACATCTCCGGCGCGCACCTCAACCCGGCGGTCACCCTCGCGTTC
GCCACCTGCGGCAGGTTCCCGTGGCGGCGGGTGCCGGCGTACGCGGCGGCGCAGGTGGCC
GGCTCGGCGGCGGCGAGCGCGGCGCTGCGGGCGCTGTTCGGCGGCGCGCCGGAGCACTTC
TTCGGGACGGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACC
TTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTGTGAGTTTGATC
CTTCTCCAAACCATTCTTGTTCTTGTACGTTTTCCAAACTGTGTTCAA