Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0196500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:5940163:5946854:1 gene:Os05g0196500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Jumonji 703 description:H3K4-specific demethylase, JmjC domain-containing protein, Control of stem elongation, Control of transposon activity, Panicle development (Os05t0196500-01)
Sequence	ATGATGGGGGTTACCACCACGCTCAACGAGGACACTGAACCCTCTATTCCACCTGGATTT GGACCTTTTGCTACCCTTCCGTTATGGGGAATCCACAATGATGCCAAACCTGCTGTTACT CATTCTACTCCTGTTCAAGCATTGCAAAGCATTAGAAAAGACAGCGAAGAATGCCAACCC AGTGCGGCTGTGTCTCGGAGTGATACACCTTGCAGCACTTCCGGAACCCAGACATGCAGA AAATCACTGCGTAACAGACCCCCAATAGACTATAGCCGCTTTGAACATATATCGGATGAA GATTCTGATGTCGAAATAGTGGAAAAGGATGTAAGTTCAACGAGACGCAGACAACAGCTA CCGAAAGGAGTACTTCGAGGATGTGCAGAATGCAGTGACTGTCAAAAGGTTATCGCAAAA TGGAATCCAGCTGGTGCACGCAGGCCTGTTCTTGATGAGGCTCCTGTTTTCTATCCAACA GAGGAGGAATTTGAAGACACTCTAAAATACATTGAGAGTATACGGCCAATGGCGGAACCA TATGGTATTTGCCGTATTGTCCCACCATCTTCTTGGAAGCCTCCATGCCTTCTTAAAGAT AAAAGCATATGGGAAGGATCAAAATTCTCTACTCGGGTACAAAAGGTTGACAAGCTCCAA AACCGTAAATCATCAAAAAAGGGCAGAAGAGGTGGAATGATGAAGAGGAGAAAGCTTGCA GAGTCAGAGGAGAACAGTGCCACTGCTCACACTCAGACAGGGATGCAGCAAAGTCCAGAG AGATTTGGATTTGAACCTGGGCCAGAGTTCACGTTACAGACATTTCAGAAATATGCAGAT GATTTCAGTAAGCAGTACTTTAGGAAAGATACATCGATGGATTCAGTACCATCAGTGGAA GATATTGAAGGTGAGTACTGGCGCATCGTTGAGGTTCCCACAGAAGAGATAGAGGTGATA TATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTGAG ACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGGAATCTAAATAACTTGCCT AGACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCT TGGGTGTATGTTGGCATGTGTTTTTCATCATTCTGCTGGCATGTTGAAGACCATCATTTA TACTCACTAAACTACATGCATTGGGGTGCCCCAAAGTTGTGGTATGGAGTTCCAGGAAAG GATGCTGTGAATTTGGAATCTGCAATGAGGAAACATCTACCTGAATTATTTGAGGAGCAA CCTGATTTGCTACACAACCTTGTTACCCAGTTTTCACCATCGCTGCTGAAATCTGAAGGA GTACATGTATACCGTTGTGTTCAGCATGAGGGCGAGTTTGTCTTGACATTCCCAAGGGCG TACCATGCTGGTTTCAATTGTGGCTTCAATTGTGCCGAAGCTGTTAATGTGGCTCCTATT GATTGGTTACCGATTGGACATAATGCTGTAGAGCTTTATCGTGAGCAAGCTAGGAAAATA ACCATTTCTCATGATAAGTTGTTGTTGGGGGCTGCAAGAGAAGCAATAAGAGCTCAGTGG GATATCCTATTCCTCAAGAGGAATACTGCTGATAATATGAGGTGGAAGAGTATATGCGGA GCTGATAGCACTATATTCAAGGCTCTTAAGGCACGAATTGAGACAGAGTTGGTGCAAAGG AAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCTGAATTCGATTCCATTGAT AGGGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCTTCTGGCTGTCCATGCTGC CCAGAGAAATATGCTTGCCTTGTACATGCAAAGCAACTTTGCTCATGTGACTGGGACAAA AGGTTTTTCCTATTCCGCTATGATGTCAATGAGCTAAATATCTTAGCTGATGCTTTAGGG GGGAAATTAAGTGCCATTCATAGATGGGGCGTCTCTGATCTTGGATTAAGTTTGAGTTCA TGTGTCAAACGAGAAAAGGTCCAAGATTCCAAGACTGTTCGCAGATTAACTGATGGTCCA AGAAGGTCTTACATGTCACAGGCATCAGCAGTATCCTTGGTTTCTTCTTCTACTTCCAAT GAACAGAAAGATGAAGGAAATAAGATCATGAAGATAGCTAGCCCACAGACAAATAATGTG TGCCCTTCTGTCGAGCAAAGGAAATCAGAGAATATTTCACCATTGAAGGAGCCATGTGTA AGGAATGAGTTGTCATGTACAACAAATTCTGATAGTAACGGATTGCAATATAATGGAGGA CTTGGAGGCCATAAAGGATCTGCACCAGGCTTGCCAGTTTCTTCTAGCCCATCATTTTCT TCCAACGTTGCAACAAGGCCCATTAGTACTTCAAGTGTATCCATGAAAATTGTGCAAGGC TTGGTGGCATCTAAAAGTTGTATACAAGCTTCCTCTCGAACTGGAGACAGTAGATCATTG CTTGGTGAGCATCATAACAGATCACCGGCAATGATTCATGATGGAACCAACATGAAGTCC AGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGCATCTGACTATAATGCAACTCCG TGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACTAATGCCTCAGTAGTGACT CTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAGTTTGTCAGAACTGGCCCA TGGACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACCTCTGCTTTGAAGCCTTCT TTAGATCCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACTCAAGGCAGTGCCCATCCT GGACCTCCAAGTTTCAGTAATCAGCAACCAAATGATGGGCGTCTTCAAAGAACATCTGAA TCTCTACCAGGTGTGGAAGCTAGAGCTAGGGGACATCCAACTGTCACGGCACAGCCTGCA CTAGAAATTCACAGCAGGAATGGAGGTGCACAGAAGGGTCCTCGCATAGCCAATGTTGTG CATCGTTTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTTGTGCTATCAGGGAGGCTG TGGTCTTCAAGCCAAGCAATCTTCCCGAAAGGGTTTAGAAGCAGAGTGAAATACTTCAGC ATTGTGGATCCAATCCAAATGGCATACTACATATCGGAAATACTGGATGCTGGGATGCAG GGGCCTCTGTTTATGGTAAAATTAGAGAACTGTCCAGGTGAAGTTTTCATTAACTTATCT CCAACCAAGTGTTGGAACATGGTCCGTGAAAGGCTGAACATGGAAATAAGGAGGCAACTT AATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGATCAGTTGATGGTCTTGAA ATGTTTGGTTTATTATCACCACCAATAGTTCAGGCAATTTGGGCGCGGGACAGAGATCAC ATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATTGAGGATCCAAACAATCGG CATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGTCTCATCCAAAGGGCTAAC CGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCAACAATTTGGATGATAGC TCCAGGCAACAGGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGA

Peptide Sequence

PEP ID	Os05t0196500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:5940163:5946854:1 gene:Os05g0196500 transcript:Os05t0196500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Jumonji 703 description:H3K4-specific demethylase, JmjC domain-containing protein, Control of stem elongation, Control of transposon activity, Panicle development (Os05t0196500-01)
Sequence	MMGVTTTLNEDTEPSIPPGFGPFATLPLWGIHNDAKPAVTHSTPVQALQSIRKDSEECQP SAAVSRSDTPCSTSGTQTCRKSLRNRPPIDYSRFEHISDEDSDVEIVEKDVSSTRRRQQL PKGVLRGCAECSDCQKVIAKWNPAGARRPVLDEAPVFYPTEEEFEDTLKYIESIRPMAEP YGICRIVPPSSWKPPCLLKDKSIWEGSKFSTRVQKVDKLQNRKSSKKGRRGGMMKRRKLA ESEENSATAHTQTGMQQSPERFGFEPGPEFTLQTFQKYADDFSKQYFRKDTSMDSVPSVE DIEGEYWRIVEVPTEEIEVIYGADLETGTFGSGFPKLSPETKSDAEDKYAQSGWNLNNLP RLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGK DAVNLESAMRKHLPELFEEQPDLLHNLVTQFSPSLLKSEGVHVYRCVQHEGEFVLTFPRA YHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQARKITISHDKLLLGAAREAIRAQW DILFLKRNTADNMRWKSICGADSTIFKALKARIETELVQRKTLGVPAQSRKMDAEFDSID RECALCYYDLHLSASGCPCCPEKYACLVHAKQLCSCDWDKRFFLFRYDVNELNILADALG GKLSAIHRWGVSDLGLSLSSCVKREKVQDSKTVRRLTDGPRRSYMSQASAVSLVSSSTSN EQKDEGNKIMKIASPQTNNVCPSVEQRKSENISPLKEPCVRNELSCTTNSDSNGLQYNGG LGGHKGSAPGLPVSSSPSFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSRTGDSRSL LGEHHNRSPAMIHDGTNMKSSLESSNNSCRLIASDYNATPCHSSKDQVLVTPGTNASVVT LKDSSQVHSASSQQFVRTGPWTQSASHEASSPSTSALKPSLDPPAMKNLYGGFTQGSAHP GPPSFSNQQPNDGRLQRTSESLPGVEARARGHPTVTAQPALEIHSRNGGAQKGPRIANVV HRFKCSVEPLEIGVVLSGRLWSSSQAIFPKGFRSRVKYFSIVDPIQMAYYISEILDAGMQ GPLFMVKLENCPGEVFINLSPTKCWNMVRERLNMEIRRQLNMGKSNLPTLQPPGSVDGLE MFGLLSPPIVQAIWARDRDHICTEYWRSRPHVLIEDPNNRHMLSQGPPLLALRGLIQRAN RDELQVLRSLMTNSNNLDDSSRQQAAHIIEEEIAKQLC

Transcript Sequence

Transcript ID	Os05t0196500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:5940163:5946854:1 gene:Os05g0196500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Jumonji 703 description:H3K4-specific demethylase, JmjC domain-containing protein, Control of stem elongation, Control of transposon activity, Panicle development (Os05t0196500-01)
Sequence	GTGCCTGTGCTTGTGCCCAACAAGAGGAGAGCAAAATTTCCCCTCGTCGTCAGCTCGCTC GCCTGCGCCACCGCCGACCCCCCATCCATCCCTCCCCGGCGACGGCGACCGGAGCAGAGG GGGGTTAGGCTCGCCGCCGCCGCCGCCGCCGCCGCTTCTGCTGCTTCTCCCGCCGCCCCG CATCGCATCTATCCCGTAATGATGGGGGTTACCACCACGCTCAACGAGGACACTGAACCC TCTATTCCACCTGGATTTGGACCTTTTGCTACCCTTCCGTTATGGGGAATCCACAATGAT GCCAAACCTGCTGTTACTCATTCTACTCCTGTTCAAGCATTGCAAAGCATTAGAAAAGAC AGCGAAGAATGCCAACCCAGTGCGGCTGTGTCTCGGAGTGATACACCTTGCAGCACTTCC GGAACCCAGACATGCAGAAAATCACTGCGTAACAGACCCCCAATAGACTATAGCCGCTTT GAACATATATCGGATGAAGATTCTGATGTCGAAATAGTGGAAAAGGATGTAAGTTCAACG AGACGCAGACAACAGCTACCGAAAGGAGTACTTCGAGGATGTGCAGAATGCAGTGACTGT CAAAAGGTTATCGCAAAATGGAATCCAGCTGGTGCACGCAGGCCTGTTCTTGATGAGGCT CCTGTTTTCTATCCAACAGAGGAGGAATTTGAAGACACTCTAAAATACATTGAGAGTATA CGGCCAATGGCGGAACCATATGGTATTTGCCGTATTGTCCCACCATCTTCTTGGAAGCCT CCATGCCTTCTTAAAGATAAAAGCATATGGGAAGGATCAAAATTCTCTACTCGGGTACAA AAGGTTGACAAGCTCCAAAACCGTAAATCATCAAAAAAGGGCAGAAGAGGTGGAATGATG AAGAGGAGAAAGCTTGCAGAGTCAGAGGAGAACAGTGCCACTGCTCACACTCAGACAGGG ATGCAGCAAAGTCCAGAGAGATTTGGATTTGAACCTGGGCCAGAGTTCACGTTACAGACA TTTCAGAAATATGCAGATGATTTCAGTAAGCAGTACTTTAGGAAAGATACATCGATGGAT TCAGTACCATCAGTGGAAGATATTGAAGGTGAGTACTGGCGCATCGTTGAGGTTCCCACA GAAGAGATAGAGGTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTT CCAAAATTATCTCCTGAGACAAAATCTGATGCTGAGGATAAATATGCACAATCTGGTTGG AATCTAAATAACTTGCCTAGACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATT TCTGGTGTTCTAGTGCCTTGGGTGTATGTTGGCATGTGTTTTTCATCATTCTGCTGGCAT GTTGAAGACCATCATTTATACTCACTAAACTACATGCATTGGGGTGCCCCAAAGTTGTGG TATGGAGTTCCAGGAAAGGATGCTGTGAATTTGGAATCTGCAATGAGGAAACATCTACCT GAATTATTTGAGGAGCAACCTGATTTGCTACACAACCTTGTTACCCAGTTTTCACCATCG CTGCTGAAATCTGAAGGAGTACATGTATACCGTTGTGTTCAGCATGAGGGCGAGTTTGTC TTGACATTCCCAAGGGCGTACCATGCTGGTTTCAATTGTGGCTTCAATTGTGCCGAAGCT GTTAATGTGGCTCCTATTGATTGGTTACCGATTGGACATAATGCTGTAGAGCTTTATCGT GAGCAAGCTAGGAAAATAACCATTTCTCATGATAAGTTGTTGTTGGGGGCTGCAAGAGAA GCAATAAGAGCTCAGTGGGATATCCTATTCCTCAAGAGGAATACTGCTGATAATATGAGG TGGAAGAGTATATGCGGAGCTGATAGCACTATATTCAAGGCTCTTAAGGCACGAATTGAG ACAGAGTTGGTGCAAAGGAAAACTCTAGGTGTTCCAGCTCAATCAAGGAAAATGGATGCT GAATTCGATTCCATTGATAGGGAATGTGCCTTGTGCTACTATGATTTACATCTTTCTGCT TCTGGCTGTCCATGCTGCCCAGAGAAATATGCTTGCCTTGTACATGCAAAGCAACTTTGC TCATGTGACTGGGACAAAAGGTTTTTCCTATTCCGCTATGATGTCAATGAGCTAAATATC TTAGCTGATGCTTTAGGGGGGAAATTAAGTGCCATTCATAGATGGGGCGTCTCTGATCTT GGATTAAGTTTGAGTTCATGTGTCAAACGAGAAAAGGTCCAAGATTCCAAGACTGTTCGC AGATTAACTGATGGTCCAAGAAGGTCTTACATGTCACAGGCATCAGCAGTATCCTTGGTT TCTTCTTCTACTTCCAATGAACAGAAAGATGAAGGAAATAAGATCATGAAGATAGCTAGC CCACAGACAAATAATGTGTGCCCTTCTGTCGAGCAAAGGAAATCAGAGAATATTTCACCA TTGAAGGAGCCATGTGTAAGGAATGAGTTGTCATGTACAACAAATTCTGATAGTAACGGA TTGCAATATAATGGAGGACTTGGAGGCCATAAAGGATCTGCACCAGGCTTGCCAGTTTCT TCTAGCCCATCATTTTCTTCCAACGTTGCAACAAGGCCCATTAGTACTTCAAGTGTATCC ATGAAAATTGTGCAAGGCTTGGTGGCATCTAAAAGTTGTATACAAGCTTCCTCTCGAACT GGAGACAGTAGATCATTGCTTGGTGAGCATCATAACAGATCACCGGCAATGATTCATGAT GGAACCAACATGAAGTCCAGTTTGGAAAGCTCAAACAATTCTTGCAGGTTGATTGCATCT GACTATAATGCAACTCCGTGTCATTCATCCAAGGATCAGGTATTAGTAACACCAGGGACT AATGCCTCAGTAGTGACTCTGAAAGATAGCAGCCAGGTCCATAGTGCGTCAAGTCAGCAG TTTGTCAGAACTGGCCCATGGACACAAAGTGCTTCTCATGAAGCATCATCACCTAGTACC TCTGCTTTGAAGCCTTCTTTAGATCCCCCTGCCATGAAAAATCTGTATGGGGGTTTTACT CAAGGCAGTGCCCATCCTGGACCTCCAAGTTTCAGTAATCAGCAACCAAATGATGGGCGT CTTCAAAGAACATCTGAATCTCTACCAGGTGTGGAAGCTAGAGCTAGGGGACATCCAACT GTCACGGCACAGCCTGCACTAGAAATTCACAGCAGGAATGGAGGTGCACAGAAGGGTCCT CGCATAGCCAATGTTGTGCATCGTTTCAAGTGCTCTGTTGAACCTCTCGAAATTGGTGTT GTGCTATCAGGGAGGCTGTGGTCTTCAAGCCAAGCAATCTTCCCGAAAGGGTTTAGAAGC AGAGTGAAATACTTCAGCATTGTGGATCCAATCCAAATGGCATACTACATATCGGAAATA CTGGATGCTGGGATGCAGGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTCCAGGTGAA GTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGCTGAACATG GAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGA TCAGTTGATGGTCTTGAAATGTTTGGTTTATTATCACCACCAATAGTTCAGGCAATTTGG GCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATT GAGGATCCAAACAATCGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGT CTCATCCAAAGGGCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGC AACAATTTGGATGATAGCTCCAGGCAACAGGCCGCGCACATTATCGAAGAGGAGATTGCG AAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATGGCATGAAT ATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCT TTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTG TTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGC TGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCT TCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTAT TACTTTCCAGTCTAACAGTGATTTTGTGCTGCTGCTAGCAGGCACTCGAGTTTTC