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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0190500-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:5553632:5554934:-1 gene:Os05g0190500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VEGETATIVE STORAGE PROTEIN 2 description:Similar to Acid phosphatase. (Os05t0190500-02)
Sequence

ATGGCGACGGCGAGGTTGATCCTCCTGCTCACGGTGGCGGCGGCGGCGGCGGGCTCCTGC
TGCTTCTGCAGCGCCCAGGAGGTGATCGTGGGCGGCGTCGGCGAGCAGCTGGCGACGGCG
CCGCCGGCCGCGCCCGCTCCCTCGCCGCCGCCGCCGTACTGCGGCAGCGTGAGGACGGCG
GTGGAGGCGCACAACATCATCGGCTGGAAGACGGTGCCGGCGGACTGCGCCGAGTACGTC
TCCGACTACTTGACCGGCGAGCGATACGGCCGCGACTCCGACGTGGTGATCAACGAGGCC
ATCGCCTACGCCGAGAGCCTCAAGCTCTCCGGCCATGGCAAGGAGATCTGGGTGTTCGAC
GTCGATGAGACCGCCCTCTCCACCCTGCCCTACCAGGCCAAGCATGGCTATGGAACTAAG
CCATACGACCACGCGAGCTTCGTCCAATACGTGGCTGGAGGGAGCGCACCGGCGCTACAG
GGAACACTGCGACTCTACCGACGGTTGCTGCAGCTCGGCATCAAGCCGGTGTTCCTGACC
GACCGCACCGAGGACCAGAGGGCCGTCACCACCCACAACCTCCTCTCGCAAGGCTACTAC
AGCTGGGAGAAGCTATTACTCCAGCCTGTTGGGCTCCAGACCACGACTCAGGCGTTCAAG
ACCGGCGAGCGGCAGAAATTGGTGAGCGCCGGCTATGTCATCGTCGGTAACATCGGTGAC
CAATGGAGCGATATCCTCGGATCACCGGAGGGCTACCGCACCTTCAAATACCCCAACCCC
ATATACTACGTCGCGTAG

Peptide Sequence

PEP ID

Os05t0190500-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:5553632:5554934:-1 gene:Os05g0190500 transcript:Os05t0190500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VEGETATIVE STORAGE PROTEIN 2 description:Similar to Acid phosphatase. (Os05t0190500-02)
Sequence

MATARLILLLTVAAAAAGSCCFCSAQEVIVGGVGEQLATAPPAAPAPSPPPPYCGSVRTA
VEAHNIIGWKTVPADCAEYVSDYLTGERYGRDSDVVINEAIAYAESLKLSGHGKEIWVFD
VDETALSTLPYQAKHGYGTKPYDHASFVQYVAGGSAPALQGTLRLYRRLLQLGIKPVFLT
DRTEDQRAVTTHNLLSQGYYSWEKLLLQPVGLQTTTQAFKTGERQKLVSAGYVIVGNIGD
QWSDILGSPEGYRTFKYPNPIYYVA

Transcript Sequence

Transcript ID

Os05t0190500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:5553632:5554934:-1 gene:Os05g0190500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VEGETATIVE STORAGE PROTEIN 2 description:Similar to Acid phosphatase. (Os05t0190500-02)
Sequence

ACAGCCTCCTCGATCTCCTCTACAGCAGCTCACTCACTGCTCAACAATGGCGACGGCGAG
GTTGATCCTCCTGCTCACGGTGGCGGCGGCGGCGGCGGGCTCCTGCTGCTTCTGCAGCGC
CCAGGAGGTGATCGTGGGCGGCGTCGGCGAGCAGCTGGCGACGGCGCCGCCGGCCGCGCC
CGCTCCCTCGCCGCCGCCGCCGTACTGCGGCAGCGTGAGGACGGCGGTGGAGGCGCACAA
CATCATCGGCTGGAAGACGGTGCCGGCGGACTGCGCCGAGTACGTCTCCGACTACTTGAC
CGGCGAGCGATACGGCCGCGACTCCGACGTGGTGATCAACGAGGCCATCGCCTACGCCGA
GAGCCTCAAGCTCTCCGGCCATGGCAAGGAGATCTGGGTGTTCGACGTCGATGAGACCGC
CCTCTCCACCCTGCCCTACCAGGCCAAGCATGGCTATGGAACTAAGCCATACGACCACGC
GAGCTTCGTCCAATACGTGGCTGGAGGGAGCGCACCGGCGCTACAGGGAACACTGCGACT
CTACCGACGGTTGCTGCAGCTCGGCATCAAGCCGGTGTTCCTGACCGACCGCACCGAGGA
CCAGAGGGCCGTCACCACCCACAACCTCCTCTCGCAAGGCTACTACAGCTGGGAGAAGCT
ATTACTCCAGCCTGTTGGGCTCCAGACCACGACTCAGGCGTTCAAGACCGGCGAGCGGCA
GAAATTGGTGAGCGCCGGCTATGTCATCGTCGGTAACATCGGTGACCAATGGAGCGATAT
CCTCGGATCACCGGAGGGCTACCGCACCTTCAAATACCCCAACCCCATATACTACGTCGC
GTAGTTTGGTGTCGGCGCCATCGCTAGCTAGCTTAGCTATAGCTAGCTATATCGATGGAT
CATAGTTCGCGTGCGTTTCATCTACTTATTTTCTTCTCATGAACTGTCGTTTGTAGTTAA
TGTTTGACGCGTTTGCTTTGATTTTTCCTCGTTAGTTGTTGATGAGATGAAATTTAAATT
TGTAATAATGTTTGTTTGGCATGGCAGTTGGCCATTCATTGATCAATGCATTGTGTTGAG
CAAGCTGGTTGTATTTATTGATCGATGGATTATACAGTTCCTTACATTAAACATATTCAT
TATAAATTGGATTTTTCATTCTCATTTC