Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0190300-03
CDS Infomation

cds chromosome:IRGSP-1.0:5:5534529:5536108:-1 gene:Os05g0190300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Acid phosphatase (Class B) family protein. (Os05t0190300-03)
Sequence

ATGGCGACGGCGAGGTTGCTCCTAGTGCTCACGGTGGTGGCGGCGGCGGGCAGCTGCTTC
TGCAGCGCCCAGGAGGCGAAGCCGCCGCCGTACTGCGGCAGCGTGAGGACGGCCATTGAG
GCGCACAACATCATCGGCTGGAAGACGTTCACGGCGGATTGCGCCAAATACCTCGCCGAC
TACCTCACCGGCGATCGATACCCCCGCGACGCCGACGTGGTGATCAACGAGGCCATCGCC
TACGCCGAGAGCCTCAAGCTCTCCGGCAGCGGCAAGGAGATCTGGGTGTTCGACGTCGAC
GAAACCGCGCTCTCCACACTGCCCTACCAAGCCAACCATGGCTACGGAGTTCAGCCATAT
GATCAGGCAAGCTTCATCCAGTACGTGTCCGAGGGAAGCGCACCGGCGCTGCAGGGGACG
CTGCGGCTCTACCAACGGCTGCTCCAGCTCGGTGTTAAGCCAGTATTCCTGACTGACCGC
ACCGAGGACCAAAGGACAGTCACCACCAACAACCTCCTCTCTCAGGGTTACTGCAGCTGG
GAGAAACTGTTGTTCCAGCCGGTTGGGCTTCAGACCACAACACAGGCGTTCAAGACTGAT
GAGCGGCAGAAGCTTGTGGACGCCGGCTATGTCATCGTCGGCAACATCGGCGACCAGTGG
ACCGACATCCTCGGCTCGCCGGAGGGCTGCCGTACGTTTAAGTACCCCAACCCCATGTAC
TATGTCGCCTAG

Peptide Sequence

PEP ID

Os05t0190300-03
PEP Infomation

pep chromosome:IRGSP-1.0:5:5534529:5536108:-1 gene:Os05g0190300 transcript:Os05t0190300-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Acid phosphatase (Class B) family protein. (Os05t0190300-03)
Sequence

MATARLLLVLTVVAAAGSCFCSAQEAKPPPYCGSVRTAIEAHNIIGWKTFTADCAKYLAD
YLTGDRYPRDADVVINEAIAYAESLKLSGSGKEIWVFDVDETALSTLPYQANHGYGVQPY
DQASFIQYVSEGSAPALQGTLRLYQRLLQLGVKPVFLTDRTEDQRTVTTNNLLSQGYCSW
EKLLFQPVGLQTTTQAFKTDERQKLVDAGYVIVGNIGDQWTDILGSPEGCRTFKYPNPMY
YVA

Transcript Sequence

Transcript ID

Os05t0190300-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:5534529:5536108:-1 gene:Os05g0190300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Acid phosphatase (Class B) family protein. (Os05t0190300-03)
Sequence

ACAGCCTCCTCGATCTCTCCTCTACAGCAGCTCATCACTGCTCAAGAGAAAGGAGACGGC
AACAATGGCGACGGCGAGGTTGCTCCTAGTGCTCACGGTGGTGGCGGCGGCGGGCAGCTG
CTTCTGCAGCGCCCAGGAGGCGAAGCCGCCGCCGTACTGCGGCAGCGTGAGGACGGCCAT
TGAGGCGCACAACATCATCGGCTGGAAGACGTTCACGGCGGATTGCGCCAAATACCTCGC
CGACTACCTCACCGGCGATCGATACCCCCGCGACGCCGACGTGGTGATCAACGAGGCCAT
CGCCTACGCCGAGAGCCTCAAGCTCTCCGGCAGCGGCAAGGAGATCTGGGTGTTCGACGT
CGACGAAACCGCGCTCTCCACACTGCCCTACCAAGCCAACCATGGCTACGGAGTTCAGCC
ATATGATCAGGCAAGCTTCATCCAGTACGTGTCCGAGGGAAGCGCACCGGCGCTGCAGGG
GACGCTGCGGCTCTACCAACGGCTGCTCCAGCTCGGTGTTAAGCCAGTATTCCTGACTGA
CCGCACCGAGGACCAAAGGACAGTCACCACCAACAACCTCCTCTCTCAGGGTTACTGCAG
CTGGGAGAAACTGTTGTTCCAGCCGGTTGGGCTTCAGACCACAACACAGGCGTTCAAGAC
TGATGAGCGGCAGAAGCTTGTGGACGCCGGCTATGTCATCGTCGGCAACATCGGCGACCA
GTGGACCGACATCCTCGGCTCGCCGGAGGGCTGCCGTACGTTTAAGTACCCCAACCCCAT
GTACTATGTCGCCTAGCTCGGCTGCCGGCCTGCGCCATAATGCTAGCTTCGCTAGCTAGC
CATATCTCGATGATCCATAATTCGCGTGTGTTTCATATATTTACTTGATTTCTTCTCATG
AACTGTTTGTAGTAGTTAACCTTTGAAGCATATGCTTGATTTCCTTTCTTAGCTATTGAT
GAGAGGTGAGATTTGAATTTGTAATAACCCTTGTTTGGCATGGGTTGGCCATATATTGAT
CGATGTATCGTGTGTTGAGCAAGCTGCTTGGATTTGTGACAATATATAATCAATAATGAG
AGTAATGGATCAAAAAGTTCCTTTCATTAAAC