Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0188800-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:5450728:5451973:1 gene:Os05g0188800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0403D02.13 protein. (Os05t0188800-00)
Sequence

ATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGTTGCATTTGGTTCT
GCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACT
ACTGGGAAGCCAGCATTTCACCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGG
GATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATG
CCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCA
GATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCCGT
GCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGA
GAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCTATGTGCATGCTTTCA
GTCGTTGGGGGCTCTGCAAGGTTCAATGAGAAACAAAGGACACTGTTTTTCCAGCATTAT
TTCCCATGGGCTTCAAAAGCTGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAG
AAGCATTTTCATGAAGATTTGGAGGAAGTGAGGAGGAACTGGGGAATTATACCGTGCCCT
AATCCCAAAAGGAGCAGTGTTTAG

Peptide Sequence

PEP ID

Os05t0188800-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:5450728:5451973:1 gene:Os05g0188800 transcript:Os05t0188800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0403D02.13 protein. (Os05t0188800-00)
Sequence

MQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEGR
DVLLERPRVISTQVSHAWDMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVATR
AREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHY
FPWASKAGLKCTDLMSVYYEKHFHEDLEEVRRNWGIIPCPNPKRSSV

Transcript Sequence

Transcript ID

Os05t0188800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:5450728:5451973:1 gene:Os05g0188800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0403D02.13 protein. (Os05t0188800-00)
Sequence

ATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGTTGCATTTGGTTCT
GCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACT
ACTGGGAAGCCAGCATTTCACCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGG
GATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATG
CCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCA
GATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCCGT
GCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGA
GAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCTATGTGCATGCTTTCA
GTCGTTGGGGGCTCTGCAAGGTTCAATGAGAAACAAAGGACACTGTTTTTCCAGCATTAT
TTCCCATGGGCTTCAAAAGCTGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAG
AAGCATTTTCATGAAGATTTGGAGGAAGTGAGGAGGAACTGGGGAATTATACCGTGCCCT
AATCCCAAAAGGAGCAGTGTTTAG