Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0188500-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:5424434:5433010:1 gene:Os05g0188500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SCC3. (Os05t0188500-01);Armadillo-type fold domain containing protein. (Os05t0188500-02)
Sequence	ATGGACGAGACCCTAGCCTCCCTGCGCCGCCCGAAGCGCGGGCGGCCGCCGCGGCCGCGG GAGGACCACTTGGCCGCCGAGGACTTCGAGGAGGAGGGGGAGGATGAGGAGGCCGAGGCG GAGGCGCTCGCGCGGCCCCAGACGAAGCGCAAGCGCGCGGCCAGCGCCGCGGCCGCGGCC GCGCTGGAGGACCAAACCCTCATCGATATTATTAAACATAATGGCAGGCTTATCAGCCAT GCTGTCAAAAAATTGGTCGAGGATTATGAATCAGATCCAAAATCTGTGATGTTTCAGATA TTAGCGATGCTATTTGAGGCTTGTGGAGCTAGGCATAACTTTTATGCAGACTACCTGTAT GAGGCAGATGTGGATGGTGTTGTGTTTTCCCTTGTCGAGCTAGCAAAAAAGGGAATGGTT GAAGATAATTACAACACCAAACAGAAGGATCTCAAGAACTTCAAAGAAAATCTTGTTTCC TTTTGGGATACCTTGGTCCATGAGTGTCAGAATGGCCCTTTATTTGATGGTAGCTTATTC CAAAAAATCAAAGACTATGTGGTTGCTTTGTCATGTACTCCTCCAAGGGTTTATCGCCAA GTAGCTTCATTGGTTGGGCTCCAGCTTGTGACGTCCTTAATATCTGTTGCTAAGACTCTC AGTGGACAGCGTGAGACCACTCAAAGACAGTTGAATGCAGAGAAGAAGAAGCAGACTGAT GGACCGATTGTTGAATCTCTAAACAAAAAGCTAGCTCATACTCACAAAAGCATTACTTAC TTGGAGGAACTAATGCGGAAAATATTCAGTGGGTTATTCATGCACCGCTATCGTGATGTT GACCCTGAGATCCGGATGTCGTGCATAAAATCACTTGGTATTTGGGTTGTCTCGTACCCA TCACTTTTCTTACAAGATATATACCTGAAGTATCTAGGATGGACACTTAATGACAAGAAT GCTGGGGTTAGAAGAACTTCTATTCTTGCCTTGCAAAGCCTGTATGAAGTGGATGAAAAC ATACCTTCTCTTGGTCTCTTTACTGAGAGATTTTACAGCAGGATGATCCAGCTTGCAGAT GATGTTGATATTTCAGTAGCTGTGTCAGCTATCGGACTCATCAAGCAGTTACTGAGGCAT CAACTTTTGAGCGATGATGATTTAGGTCCACTATATGATTTGCTTATTGATGAGCCTCCG CTGATCAGGCGTGCAATTGGGGAATTGGTTTATGATCATCTGATAGCACAAAACATCAAA ACCTCCCAGTCTGGAGCAAGAGATGGAAACAATGATTCATCAGAGGTTCATATTGGTCGA ATGCTGCAAATCCTGAGGGAATTTTCAGATGACCCAGTCCTGAGCTCTTATGTCATTGAT GATATTTGGGATGACATGAAGGCTATGAAAGATTGGAAGTGTATAATCTCCATGCTTCTG GATGAAAATCCATTAACCGAGCTTACTGACATGGATGGAACCAATCTAGTTCGGATGCTG CGAGCCTCTGCAAAGAAGGCTGTTGGGGAAAGGATAGTTCCTGCAACAGACAATAGAAAG ATGTACTACAATAAAGGCCAGAAGGAAATATTGGAAAACAGCAAGCATGAAATAACTACT GCTTTGCTGAAGAAATATCCACAGCTTTTAAGAAAATACATATCTGACAAAGCTAAGATA TCACCTCTAATTGATATGATGATGCTTATGAAACTTGAGCTGTACTCACTAAAAAGGCAA GATCAGCATTTCAAGGCTGCCATAGATCTCATTGCGGATGCCTTCTTTAAACATGGTGAC AAGGAGACCTTGAGGTCTTGCATCAAGGCAATTACTTTCTGTTGCACTAACTGTCAGGCA GATCTTCAAAATTATGCTGAAAACAAACTGAAGGATCTTGAAGACGAGTTGGTTTTGAAA GTCAAAACTGCAATCAAGGAAGTAGAGGCAGGTGATGATGAATACTCCCTCATGGTTAAT TTGAAGCGATTTTATGAGCTTCAGTTGTCAAAACCTGTCAAAAATGATGGTTTATTTGAG GACATGTACAGAATCCTGAGTCATCTAAAAGATATGGATAATGAGGTGAAGAGCTTTCTC CTCCTTAACATGTACCTTCAATTAGCATGGTGCCTGAATGCTATTGATGGTGAAAACCCA TCTGAAGCTTCCATTGACGAACTTTTATCCAGGCAAAGCTCTCTTTTTGAAAAACTCTAT TATTACTTGGTGGTTCTGCCTACTTATCAGAAAGAGGGAAGGAGCACCACTATACTTTCC TGCAGAGTCTGTGTCATTACTGCTGAGATGTGGTGCCTGTTTAAGAAGCCAAAATATTCT TCAACAAGGCTCGAGAGTTTGGGATATCTCCCGCAACTAGATGTTGTCCAGAATTTCTGG AAACTATGTGAACAACAGCTCAACATACCAGATGAAATAGAAGATGAAGATGCAAATGAA GAATATATTGAAGACACAAACAAGGATGTTGTCATGATTGCAGCTGCAAAGCTAGTGCTA GCTGATACAGTTTCAAAGGATTACCTGGGCCCAGAGCTTGTTTCTCACTATGCATCCCAT GGAACAAGTACTACAGAGATAATCAAACATCTAATCACCTCGCTTCGGAAAAATGCTGAC AACAACATGGGTGCCTTATTTTTCGAGGCACTGAAAAGGGGATATGAGCGGTATATGGCC CATGTAAGTGATGGGGAAAATCAAACCCTCATTGGCAAGTCTTATTCAGAATGCCAAGAT CTTGCTGGTCGGCTCGCGGGGTCCTATGTTGGTGCCTCGCGCAATAAAAACAAGTCTGAG ATCTTGAAGATAATCCAAGACGGTGTTTCTTTTGCATTTGTGGACCTTCCAAAGCAATTG TCTTTCCTCGAGGCTGCTCTACTGCCATTTGTTTCTAAACTTCCATCGTCAGATATACCA GACATCCTGATAGATGTACAGAAGAGGACTCAAGATACTAATACTAATGAAGATCCAAGT GCTTGGCGCCCGTACTTTACGTTTGTAGAGCATCTACGCGATAAGCATGCAAAGAATGAG GTTTTGCAGGAGGAAAAGGAGGAAAAACCTGTAAAGCGCAGGGGTCGGCCAAGGAAGGTT AGAGATGTACCTGCAAGGAATCTTTTTGATGGACACAAGTCTAGCGATGAAGAGTCTGTT AGTGACTCTGATCAGCAAGGGCATGGTGAAGACAATGACGACGATGACGCAGATCAGCCT CTGATCAACACGTTTAGGTCTTCCGCATCCAAGCTAAGATCACTGAAGGTTTCTCAGCAA GGAACAAGCGGTCAGAAAGGACCTTCGAGGGCATCAGGAAGCAATAGCTGA

Peptide Sequence

PEP ID	Os05t0188500-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:5424434:5433010:1 gene:Os05g0188500 transcript:Os05t0188500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SCC3. (Os05t0188500-01);Armadillo-type fold domain containing protein. (Os05t0188500-02)
Sequence	MDETLASLRRPKRGRPPRPREDHLAAEDFEEEGEDEEAEAEALARPQTKRKRAASAAAAA ALEDQTLIDIIKHNGRLISHAVKKLVEDYESDPKSVMFQILAMLFEACGARHNFYADYLY EADVDGVVFSLVELAKKGMVEDNYNTKQKDLKNFKENLVSFWDTLVHECQNGPLFDGSLF QKIKDYVVALSCTPPRVYRQVASLVGLQLVTSLISVAKTLSGQRETTQRQLNAEKKKQTD GPIVESLNKKLAHTHKSITYLEELMRKIFSGLFMHRYRDVDPEIRMSCIKSLGIWVVSYP SLFLQDIYLKYLGWTLNDKNAGVRRTSILALQSLYEVDENIPSLGLFTERFYSRMIQLAD DVDISVAVSAIGLIKQLLRHQLLSDDDLGPLYDLLIDEPPLIRRAIGELVYDHLIAQNIK TSQSGARDGNNDSSEVHIGRMLQILREFSDDPVLSSYVIDDIWDDMKAMKDWKCIISMLL DENPLTELTDMDGTNLVRMLRASAKKAVGERIVPATDNRKMYYNKGQKEILENSKHEITT ALLKKYPQLLRKYISDKAKISPLIDMMMLMKLELYSLKRQDQHFKAAIDLIADAFFKHGD KETLRSCIKAITFCCTNCQADLQNYAENKLKDLEDELVLKVKTAIKEVEAGDDEYSLMVN LKRFYELQLSKPVKNDGLFEDMYRILSHLKDMDNEVKSFLLLNMYLQLAWCLNAIDGENP SEASIDELLSRQSSLFEKLYYYLVVLPTYQKEGRSTTILSCRVCVITAEMWCLFKKPKYS STRLESLGYLPQLDVVQNFWKLCEQQLNIPDEIEDEDANEEYIEDTNKDVVMIAAAKLVL ADTVSKDYLGPELVSHYASHGTSTTEIIKHLITSLRKNADNNMGALFFEALKRGYERYMA HVSDGENQTLIGKSYSECQDLAGRLAGSYVGASRNKNKSEILKIIQDGVSFAFVDLPKQL SFLEAALLPFVSKLPSSDIPDILIDVQKRTQDTNTNEDPSAWRPYFTFVEHLRDKHAKNE VLQEEKEEKPVKRRGRPRKVRDVPARNLFDGHKSSDEESVSDSDQQGHGEDNDDDDADQP LINTFRSSASKLRSLKVSQQGTSGQKGPSRASGSNS

Transcript Sequence

Transcript ID	Os05t0188500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:5424434:5433010:1 gene:Os05g0188500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SCC3. (Os05t0188500-01);Armadillo-type fold domain containing protein. (Os05t0188500-02)
Sequence	AGGGTTTCCCCCTCCTCCGCTCTCACACTGCCTCGCCTCCCCGGATGGACGAGACCCTAG CCTCCCTGCGCCGCCCGAAGCGCGGGCGGCCGCCGCGGCCGCGGGAGGACCACTTGGCCG CCGAGGACTTCGAGGAGGAGGGGGAGGATGAGGAGGCCGAGGCGGAGGCGCTCGCGCGGC CCCAGACGAAGCGCAAGCGCGCGGCCAGCGCCGCGGCCGCGGCCGCGCTGGAGGACCAAA CCCTCATCGATATTATTAAACATAATGGCAGGCTTATCAGCCATGCTGTCAAAAAATTGG TCGAGGATTATGAATCAGATCCAAAATCTGTGATGTTTCAGATATTAGCGATGCTATTTG AGGCTTGTGGAGCTAGGCATAACTTTTATGCAGACTACCTGTATGAGGCAGATGTGGATG GTGTTGTGTTTTCCCTTGTCGAGCTAGCAAAAAAGGGAATGGTTGAAGATAATTACAACA CCAAACAGAAGGATCTCAAGAACTTCAAAGAAAATCTTGTTTCCTTTTGGGATACCTTGG TCCATGAGTGTCAGAATGGCCCTTTATTTGATGGTAGCTTATTCCAAAAAATCAAAGACT ATGTGGTTGCTTTGTCATGTACTCCTCCAAGGGTTTATCGCCAAGTAGCTTCATTGGTTG GGCTCCAGCTTGTGACGTCCTTAATATCTGTTGCTAAGACTCTCAGTGGACAGCGTGAGA CCACTCAAAGACAGTTGAATGCAGAGAAGAAGAAGCAGACTGATGGACCGATTGTTGAAT CTCTAAACAAAAAGCTAGCTCATACTCACAAAAGCATTACTTACTTGGAGGAACTAATGC GGAAAATATTCAGTGGGTTATTCATGCACCGCTATCGTGATGTTGACCCTGAGATCCGGA TGTCGTGCATAAAATCACTTGGTATTTGGGTTGTCTCGTACCCATCACTTTTCTTACAAG ATATATACCTGAAGTATCTAGGATGGACACTTAATGACAAGAATGCTGGGGTTAGAAGAA CTTCTATTCTTGCCTTGCAAAGCCTGTATGAAGTGGATGAAAACATACCTTCTCTTGGTC TCTTTACTGAGAGATTTTACAGCAGGATGATCCAGCTTGCAGATGATGTTGATATTTCAG TAGCTGTGTCAGCTATCGGACTCATCAAGCAGTTACTGAGGCATCAACTTTTGAGCGATG ATGATTTAGGTCCACTATATGATTTGCTTATTGATGAGCCTCCGCTGATCAGGCGTGCAA TTGGGGAATTGGTTTATGATCATCTGATAGCACAAAACATCAAAACCTCCCAGTCTGGAG CAAGAGATGGAAACAATGATTCATCAGAGGTTCATATTGGTCGAATGCTGCAAATCCTGA GGGAATTTTCAGATGACCCAGTCCTGAGCTCTTATGTCATTGATGATATTTGGGATGACA TGAAGGCTATGAAAGATTGGAAGTGTATAATCTCCATGCTTCTGGATGAAAATCCATTAA CCGAGCTTACTGACATGGATGGAACCAATCTAGTTCGGATGCTGCGAGCCTCTGCAAAGA AGGCTGTTGGGGAAAGGATAGTTCCTGCAACAGACAATAGAAAGATGTACTACAATAAAG GCCAGAAGGAAATATTGGAAAACAGCAAGCATGAAATAACTACTGCTTTGCTGAAGAAAT ATCCACAGCTTTTAAGAAAATACATATCTGACAAAGCTAAGATATCACCTCTAATTGATA TGATGATGCTTATGAAACTTGAGCTGTACTCACTAAAAAGGCAAGATCAGCATTTCAAGG CTGCCATAGATCTCATTGCGGATGCCTTCTTTAAACATGGTGACAAGGAGACCTTGAGGT CTTGCATCAAGGCAATTACTTTCTGTTGCACTAACTGTCAGGCAGATCTTCAAAATTATG CTGAAAACAAACTGAAGGATCTTGAAGACGAGTTGGTTTTGAAAGTCAAAACTGCAATCA AGGAAGTAGAGGCAGGTGATGATGAATACTCCCTCATGGTTAATTTGAAGCGATTTTATG AGCTTCAGTTGTCAAAACCTGTCAAAAATGATGGTTTATTTGAGGACATGTACAGAATCC TGAGTCATCTAAAAGATATGGATAATGAGGTGAAGAGCTTTCTCCTCCTTAACATGTACC TTCAATTAGCATGGTGCCTGAATGCTATTGATGGTGAAAACCCATCTGAAGCTTCCATTG ACGAACTTTTATCCAGGCAAAGCTCTCTTTTTGAAAAACTCTATTATTACTTGGTGGTTC TGCCTACTTATCAGAAAGAGGGAAGGAGCACCACTATACTTTCCTGCAGAGTCTGTGTCA TTACTGCTGAGATGTGGTGCCTGTTTAAGAAGCCAAAATATTCTTCAACAAGGCTCGAGA GTTTGGGATATCTCCCGCAACTAGATGTTGTCCAGAATTTCTGGAAACTATGTGAACAAC AGCTCAACATACCAGATGAAATAGAAGATGAAGATGCAAATGAAGAATATATTGAAGACA CAAACAAGGATGTTGTCATGATTGCAGCTGCAAAGCTAGTGCTAGCTGATACAGTTTCAA AGGATTACCTGGGCCCAGAGCTTGTTTCTCACTATGCATCCCATGGAACAAGTACTACAG AGATAATCAAACATCTAATCACCTCGCTTCGGAAAAATGCTGACAACAACATGGGTGCCT TATTTTTCGAGGCACTGAAAAGGGGATATGAGCGGTATATGGCCCATGTAAGTGATGGGG AAAATCAAACCCTCATTGGCAAGTCTTATTCAGAATGCCAAGATCTTGCTGGTCGGCTCG CGGGGTCCTATGTTGGTGCCTCGCGCAATAAAAACAAGTCTGAGATCTTGAAGATAATCC AAGACGGTGTTTCTTTTGCATTTGTGGACCTTCCAAAGCAATTGTCTTTCCTCGAGGCTG CTCTACTGCCATTTGTTTCTAAACTTCCATCGTCAGATATACCAGACATCCTGATAGATG TACAGAAGAGGACTCAAGATACTAATACTAATGAAGATCCAAGTGCTTGGCGCCCGTACT TTACGTTTGTAGAGCATCTACGCGATAAGCATGCAAAGAATGAGGTTTTGCAGGAGGAAA AGGAGGAAAAACCTGTAAAGCGCAGGGGTCGGCCAAGGAAGGTTAGAGATGTACCTGCAA GGAATCTTTTTGATGGACACAAGTCTAGCGATGAAGAGTCTGTTAGTGACTCTGATCAGC AAGGGCATGGTGAAGACAATGACGACGATGACGCAGATCAGCCTCTGATCAACACGTTTA GGTCTTCCGCATCCAAGCTAAGATCACTGAAGGTTTCTCAGCAAGGAACAAGCGGTCAGA AAGGACCTTCGAGGGCATCAGGAAGCAATAGCTGAGGGCACGCACTGACGTCGTTACGCA TGACTGAACTTGGCACAAATGAATGCAGCAGATTTGTGGCGTTGTAGATGATTTGTACCT AGGTGCTCACCCTTTTGGTAAACAACGTGACATAGACATTTGTTAGGTTTTTACCCCTTC GCCATGTATATTATGTTCAGTAATAATATATGTAGAAAATCGCATGTTGCATTGTACCAA TTTGATCGATGTATTTCTCCTGGGTTCCGAGACTAAAGAACACTTGCATGCGAGAGATAG GGAGAGCAGCAACCATTTTTTATTTATTCAATGGAGAATCCGAACCTTGGATTGGTTTGC ATGGGAACCAATGAGCCCGGCAATCCTTGCATACC