Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0187000-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:5335103:5336845:1 gene:Os05g0187000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:20S proteasome beta2 subunit, proteasome component PUP1 description:Beta 2 subunit of 20S proteasome (20S proteasome beta subunit). (Os05t0187000-01);Similar to Proteasome subunit beta type 7-A. (Os05t0187000-02)
Sequence	CATTATATGGCGCCAAACATATATTGCTGTGGAGCAGGAACTGCCGCTGACACTGAGGCT GTAACAGATATGGTCAGTTCCCAGCTTCAACTTCACCGTTATGCAACTGGTCGTGAGTCC AGAGTTGTAACCTCTCTTACATTACTGAAGTCGCACCTTTTTAGCTACCAAGGTCATGTC AGTGCTGCCCTTGTTCTTGGTGGAGTAGATGTTACTGGGCCACACCTGCACACTGTTTAT CCACATGGCTCCACGGACACTCTTCCTTTTGCCACAATGGGTTCTGGATCCCTTGCGGCA ATGTCAGTGTTTGAATCGAAGTACAAAGAAGGCCTCACAAGGGAGGAGGGAATACAACTT GTTGCTGAGGCAATTCGTGGTGGTATCTTCAATGACTTGGGCAGTGGCAGCAATGTGGAT GTTTGCGTAATCACCAAGGGGAAGACAGAGTACTTGAGAAACCACCAGTTACCAAATCCA AGGACTTACGTTAGTTCGAAGGGGTACAACTTCACCAAGGGGCAGACTGTGGTGTTGTCC ACAAAGATAACACAACTGAAGCCGAAGGTAGAGGTGACAGAGGGTGATGCAATGGAGGAG TGA

Peptide Sequence

PEP ID	Os05t0187000-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:5335103:5336845:1 gene:Os05g0187000 transcript:Os05t0187000-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:20S proteasome beta2 subunit, proteasome component PUP1 description:Beta 2 subunit of 20S proteasome (20S proteasome beta subunit). (Os05t0187000-01);Similar to Proteasome subunit beta type 7-A. (Os05t0187000-02)
Sequence	HYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHV SAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQL VAEAIRGGIFNDLGSGSNVDVCVITKGKTEYLRNHQLPNPRTYVSSKGYNFTKGQTVVLS TKITQLKPKVEVTEGDAMEE

Transcript Sequence

Transcript ID	Os05t0187000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:5335103:5336845:1 gene:Os05g0187000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:20S proteasome beta2 subunit, proteasome component PUP1 description:Beta 2 subunit of 20S proteasome (20S proteasome beta subunit). (Os05t0187000-01);Similar to Proteasome subunit beta type 7-A. (Os05t0187000-02)
Sequence	CATTATATGGCGCCAAACATATATTGCTGTGGAGCAGGAACTGCCGCTGACACTGAGGCT GTAACAGATATGGTCAGTTCCCAGCTTCAACTTCACCGTTATGCAACTGGTCGTGAGTCC AGAGTTGTAACCTCTCTTACATTACTGAAGTCGCACCTTTTTAGCTACCAAGGTCATGTC AGTGCTGCCCTTGTTCTTGGTGGAGTAGATGTTACTGGGCCACACCTGCACACTGTTTAT CCACATGGCTCCACGGACACTCTTCCTTTTGCCACAATGGGTTCTGGATCCCTTGCGGCA ATGTCAGTGTTTGAATCGAAGTACAAAGAAGGCCTCACAAGGGAGGAGGGAATACAACTT GTTGCTGAGGCAATTCGTGGTGGTATCTTCAATGACTTGGGCAGTGGCAGCAATGTGGAT GTTTGCGTAATCACCAAGGGGAAGACAGAGTACTTGAGAAACCACCAGTTACCAAATCCA AGGACTTACGTTAGTTCGAAGGGGTACAACTTCACCAAGGGGCAGACTGTGGTGTTGTCC ACAAAGATAACACAACTGAAGCCGAAGGTAGAGGTGACAGAGGGTGATGCAATGGAGGAG TGATTTTGTGTGCTTACATTCAGACAAGCAGTCACGTTGAGAACATATGCTTTCATTTCA GTGGAAATGCTTGAACAAAAAAAGATGACTCTTGTTGTACTTCCTTGGGCTTAATGCACA TCTTTAAGTTGATTTTCGACACATTTATGG