Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0183900-00
CDS Infomation	cds chromosome:IRGSP-1.0:5:5113979:5115430:1 gene:Os05g0183900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to transposon protein CACTA, En/Spm sub-class. (Os05t0183900-00)
Sequence	ATGAACACCTTCCTCGAGCTCGAGCCCTTCTCCACTCCTCTCTTTGAAATCCCCGACGAT GCCGATTTTGAGTACACATCCATGCTCGCCGCTGACGACTTCTCCCTCATGGACGGCGAC TTTCTTGCTGACCAGCCGCCGGCGCCGGCGGAGGTGGTGGCAGGCGGAGGTGATGCCAGT GGGAAGCGGAGTTTCCATGCCAACGACGGCGAGGCCATGTGTGTCGTGTCCCGGTCGTCT AAGAGAAGGAAGAAGGCGCCAACGAATTCGACCTCGCCGTCCAACCGCGACGGCAGCGGC GGCGGCGGCGGCGGCGAGGGGAATGAGCCGACGGCGGAAAGGCGAGGTAGCCGGCGGGTG TGGGTGCGGGAGCGTAGCACGGAGTGGTGGGACCGCATGAGGGACCCGGCGGCTTGCCCG GAGGCGGACTTCCGGCGAGCCTTCCGCATGCCGCGCGCGGTGTTCGACAAGCTCTGCGAC GACCTGGCCGCCGCCGTCGCCAAGGTGGACACCACGCTCCGCTCCGCCATCCCCGTGCCG CAGCGCGTCGCCGTCTGCCTCTGGCGCCTCGCCACCGGCGACCCACTCCGCGAGGTGTCC CGCCGCTTTGGCCTCGGCATCTCCACCTGCCACAACATCATCGTCCAGGTCTGCGCCGCC ATCACCGCCGTCCTCCTCACCAGGGTTGTCCGGTGGCCGGACTCCCACGCCGCCGCCGCG TCCAGGTTCCAGGCCTTGTCTTGGATCCCTGGAGTCGTCGGCGCCGTGCACACCGAGCAC TTCCGCATCGTCGCGCCGAGGGAGCACGCCGGCAAGTACTACGACCACCGCCTCACCGGC CGGAACAACAAGGCCACCTACTCCGTCGCCATGCAGGCCGTCGTGGACGCCGACGGCGCC TTCACCGACGTCTGCATCGGCCACCCCGGCTCGCTGTCCGACGCTGCCATCCTCGCGAAG TCGGCTCTGTACGCCCGGTGCGAGGCTGGGCTTCTGCTCGGCCACGACAAGCTCGGGTGG CAACAGCCGCTGTGGCTCGTCGGCGGCGCGAGCTACCCGCTGACGAGCTGGATGCTGGTG CCGTACACGCAGCCGAACCTGACGTGGGCGCAGGACAGGCTCAACGCGCGGGTGGCCGAC GCGCGCGCGGCGGCGGTGGGTGCGTTCCGGCGGCTCAGGGCGCGGTGGCAGTGCCTGCGG CGCGCCGAGGTGAAGCTGCCGGAGCTAGCCAACATGCTGGGCGCCTGCTGCGTGCTGCAC AACCTCTGCGAGCGCAGCGGCCATGGGCTCGATGCCGACCTCCTCGATCTCCTGGACGAC GAGCTCGTCGACGACGGAGTGGTCGCCGGTGGCGGCAATACAGTGCGCTCCCCCGCCGCC GAACAGGTGAGAGACAGGATCGCGCACGGTCTCCTAGACCAATACGTCGGGAATGCTTCT TTGAGTGGCTAG

Peptide Sequence

PEP ID	Os05t0183900-00
PEP Infomation	pep chromosome:IRGSP-1.0:5:5113979:5115430:1 gene:Os05g0183900 transcript:Os05t0183900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to transposon protein CACTA, En/Spm sub-class. (Os05t0183900-00)
Sequence	MNTFLELEPFSTPLFEIPDDADFEYTSMLAADDFSLMDGDFLADQPPAPAEVVAGGGDAS GKRSFHANDGEAMCVVSRSSKRRKKAPTNSTSPSNRDGSGGGGGGEGNEPTAERRGSRRV WVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFDKLCDDLAAAVAKVDTTLRSAIPVP QRVAVCLWRLATGDPLREVSRRFGLGISTCHNIIVQVCAAITAVLLTRVVRWPDSHAAAA SRFQALSWIPGVVGAVHTEHFRIVAPREHAGKYYDHRLTGRNNKATYSVAMQAVVDADGA FTDVCIGHPGSLSDAAILAKSALYARCEAGLLLGHDKLGWQQPLWLVGGASYPLTSWMLV PYTQPNLTWAQDRLNARVADARAAAVGAFRRLRARWQCLRRAEVKLPELANMLGACCVLH NLCERSGHGLDADLLDLLDDELVDDGVVAGGGNTVRSPAAEQVRDRIAHGLLDQYVGNAS LSG

Transcript Sequence

Transcript ID	Os05t0183900-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:5113979:5115430:1 gene:Os05g0183900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to transposon protein CACTA, En/Spm sub-class. (Os05t0183900-00)
Sequence	ATGAACACCTTCCTCGAGCTCGAGCCCTTCTCCACTCCTCTCTTTGAAATCCCCGACGAT GCCGATTTTGAGTACACATCCATGCTCGCCGCTGACGACTTCTCCCTCATGGACGGCGAC TTTCTTGCTGACCAGCCGCCGGCGCCGGCGGAGGTGGTGGCAGGCGGAGGTGATGCCAGT GGGAAGCGGAGTTTCCATGCCAACGACGGCGAGGCCATGTGTGTCGTGTCCCGGTCGTCT AAGAGAAGGAAGAAGGCGCCAACGAATTCGACCTCGCCGTCCAACCGCGACGGCAGCGGC GGCGGCGGCGGCGGCGAGGGGAATGAGCCGACGGCGGAAAGGCGAGGTAGCCGGCGGGTG TGGGTGCGGGAGCGTAGCACGGAGTGGTGGGACCGCATGAGGGACCCGGCGGCTTGCCCG GAGGCGGACTTCCGGCGAGCCTTCCGCATGCCGCGCGCGGTGTTCGACAAGCTCTGCGAC GACCTGGCCGCCGCCGTCGCCAAGGTGGACACCACGCTCCGCTCCGCCATCCCCGTGCCG CAGCGCGTCGCCGTCTGCCTCTGGCGCCTCGCCACCGGCGACCCACTCCGCGAGGTGTCC CGCCGCTTTGGCCTCGGCATCTCCACCTGCCACAACATCATCGTCCAGGTCTGCGCCGCC ATCACCGCCGTCCTCCTCACCAGGGTTGTCCGGTGGCCGGACTCCCACGCCGCCGCCGCG TCCAGGTTCCAGGCCTTGTCTTGGATCCCTGGAGTCGTCGGCGCCGTGCACACCGAGCAC TTCCGCATCGTCGCGCCGAGGGAGCACGCCGGCAAGTACTACGACCACCGCCTCACCGGC CGGAACAACAAGGCCACCTACTCCGTCGCCATGCAGGCCGTCGTGGACGCCGACGGCGCC TTCACCGACGTCTGCATCGGCCACCCCGGCTCGCTGTCCGACGCTGCCATCCTCGCGAAG TCGGCTCTGTACGCCCGGTGCGAGGCTGGGCTTCTGCTCGGCCACGACAAGCTCGGGTGG CAACAGCCGCTGTGGCTCGTCGGCGGCGCGAGCTACCCGCTGACGAGCTGGATGCTGGTG CCGTACACGCAGCCGAACCTGACGTGGGCGCAGGACAGGCTCAACGCGCGGGTGGCCGAC GCGCGCGCGGCGGCGGTGGGTGCGTTCCGGCGGCTCAGGGCGCGGTGGCAGTGCCTGCGG CGCGCCGAGGTGAAGCTGCCGGAGCTAGCCAACATGCTGGGCGCCTGCTGCGTGCTGCAC AACCTCTGCGAGCGCAGCGGCCATGGGCTCGATGCCGACCTCCTCGATCTCCTGGACGAC GAGCTCGTCGACGACGGAGTGGTCGCCGGTGGCGGCAATACAGTGCGCTCCCCCGCCGCC GAACAGGTGAGAGACAGGATCGCGCACGGTCTCCTAGACCAATACGTCGGGAATGCTTCT TTGAGTGGCTAG