Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0180600-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:4854217:4865599:-1 gene:Os05g0180600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphatidylinositol 3-kinase, root isoform. (Os05t0180600-01);Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os05t0180600-02)
Sequence	ATGGCGAACGGCGGCGAGTTCCGCTTCTTCCTCTCATGCGACATCAGCCTCCCGCTCGCC TTCCGCGTCGACCGCCTCCTCCACTACCCCACGCCCACCCAGCCTTCTCCTCCTCAAGAT TGTACAACCTTGGCGACCAACAAGAAGGTTCCGGAGCTTGTTGTTGAGTGCAAACTCTAC ATCGATGGGATACAATTCGGCTTGCCCGTGAGCACGAGGCTCGAATCGTCAGGGCCACCA TACTTCTGGAACGAGGTTATGACGCTCACCGCGAAATACAGGGATCTCACCTCCCTTTCG CAGCTTGCGTTCACGGTTTGGGATATGTCATCTGGTGAGGACGGAAATATTGTTGGTGGA GCCACCATATTTCTTTTCAACAACAAAAAGCAACTTAAAACAGGAAGGCAGAAGCTGCGA CTATGGCCCCAAAAGGAGGCAGATGGAAGAGTCCCCACCACGACTCCTGGCAAGGTACCT AAGAATGAGAGGGGTGAGATAGAGCGTTTGGAGAGGCTTGTTAATAAGCATGAAAGAGGA CAGATACAACATGTAGAATGGTTGGATCGTCTTTTCTTCAGAGCCATGGACAAAGCTAAG GAGAAGTGTGAAAGAACTGAAAATTTGTACCCTAGCCTTGTTGTTGAATTTTGCAGTTTT GAACACAGAGTTGTCTTCCAGGAATCTGGAGCAAATTTCTATGCACCAGCCCCTGTGTTG TTATCAAATCAACTTGTTACTGTATGGGACCCTGAACTAGGAAGAACCAATCCATCTGAG CACAAACAGTTAAAGCTTGCAAGGAGCCTAACTCGTGGAATAATTGATAAAGATCTGAAA CCAAGCTCAAATGAGCGAAAGTGTCTGCAAAGAATTATCAAGTTTCCTCCTACACGCTCT TTACAAGTGGATGAGAAGCAGCTGGTCTGGAAATTTCGGTTCTCTTTGATGTCTGAGAAG AAAGCTCTTACAAAGTTTGTTCGTGCAGTGGACTGGAGCGATATCCAAGAAGCTAAACAA GCTGTTGAATTGATTAGAAAGTGGGAAACAATTGATGTGGCTGATGCATTAGAGCTTCTC TCACCAGACTTTGAAAGTGAGGAGGTTCGAGCTTATGCCGTCAACATACTTGAAAGGGCA GATGATGAAGAATTACAATGCTATTTACTCCAGCTAGTGCAAGCTCTTCGGTTTGAAAGA TCGGATGAGTCTTGTCTGGCACACTTTCTTGTAAAACGTGCTGTATCAAACATTGAAATT GCTAGCTTCCTTCGCTGGTATGTGGTCGTTGAGCTGCGTGACACTGCATATGCAAGACGG TATTACAGTACATATGACTTGCTTGAAAATGGCATGATGAAATTTGCTAGGGATGATGGT GATGAAGACGGATTTCGACTTTGGCAGAGTTTAACACGGCAGACTGAACTTATGGCTCAG TTAGGTTCTATTATGAAGGATGTAAAACAAGTTCGTGGTAGTGCACAAAAGAAAATCGAT GGATTAAGACAATTATTATCAGGAGTTTTCAGTGAGCTTACCAACTTTGATGAGCCAATT CGTTCACCATTAGCACCAACTGTTCTCCTTACTGGGGTTATACCTCAAGAATCATCTATA TTTAAAAGTGCCTTGCATCCTTTGCGCCTTGCCTTTAAGACCGCAAATGGGGGAATATCG AAGATAATTTATAAAAAGGGAGATGATCTCCGCCAAGATCAGCTGGTTATTCAAATGGTC TCCTTGATGGACCGGCTGCTCAAATTAGAAAATATGGATTTACACCTTACTCCATATCGA GTTCTTGCAACTCAACCAGATGAAGGAATGCTTGAATTTATTCCTTCCAGTTCACTTGCA CAGATTCTATCAGAACATCGCACTATTACAAGTTACCTACAAAAATTTCATCCTGATGAA GATGGTCCTTTTGGTATAACTGCTCAGTGCTTGGAAACTTTCATAAAAAGCTGTGCTGGT TACTCTGTCATTACATATATAATGGGGGTTGGAGACAGGCATCTGGATAATCTTCTTCTA ACAGATGATGGACGCCTCTTCCACGTTGATTTCGCTTTCATTCTGGGTAAAGATCCAAAG CCATTTCCACCACCAATGAAACTATGCAAAGAAATGGTTGAGGCCATGGGTGGTGCAGAA AGCCAATACTACACGAGATTCAAGTCATACTGTTGCGAAGCATACAACATTTTAAGGAAG TCCAGTAGCCTCATATTGAATCTGTTCAACTTGATGAGAAGATCAAATATTCCAGACATC ACTAACGAGGAAAATGCAGGCCTTAAGCTTCAAGAGAAATTTCGGCTTGATCTGGAAGAT GAGGAAGCCATACATTTCTTCCAAGATCTTATCAACGAAAGCGTCAGCGCTTTGTTCCCT CAGATGGTTGAGACAATCCATAGATGGGCTCAATACTGGCGCTAA

Peptide Sequence

PEP ID	Os05t0180600-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:4854217:4865599:-1 gene:Os05g0180600 transcript:Os05t0180600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphatidylinositol 3-kinase, root isoform. (Os05t0180600-01);Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os05t0180600-02)
Sequence	MANGGEFRFFLSCDISLPLAFRVDRLLHYPTPTQPSPPQDCTTLATNKKVPELVVECKLY IDGIQFGLPVSTRLESSGPPYFWNEVMTLTAKYRDLTSLSQLAFTVWDMSSGEDGNIVGG ATIFLFNNKKQLKTGRQKLRLWPQKEADGRVPTTTPGKVPKNERGEIERLERLVNKHERG QIQHVEWLDRLFFRAMDKAKEKCERTENLYPSLVVEFCSFEHRVVFQESGANFYAPAPVL LSNQLVTVWDPELGRTNPSEHKQLKLARSLTRGIIDKDLKPSSNERKCLQRIIKFPPTRS LQVDEKQLVWKFRFSLMSEKKALTKFVRAVDWSDIQEAKQAVELIRKWETIDVADALELL SPDFESEEVRAYAVNILERADDEELQCYLLQLVQALRFERSDESCLAHFLVKRAVSNIEI ASFLRWYVVVELRDTAYARRYYSTYDLLENGMMKFARDDGDEDGFRLWQSLTRQTELMAQ LGSIMKDVKQVRGSAQKKIDGLRQLLSGVFSELTNFDEPIRSPLAPTVLLTGVIPQESSI FKSALHPLRLAFKTANGGISKIIYKKGDDLRQDQLVIQMVSLMDRLLKLENMDLHLTPYR VLATQPDEGMLEFIPSSSLAQILSEHRTITSYLQKFHPDEDGPFGITAQCLETFIKSCAG YSVITYIMGVGDRHLDNLLLTDDGRLFHVDFAFILGKDPKPFPPPMKLCKEMVEAMGGAE SQYYTRFKSYCCEAYNILRKSSSLILNLFNLMRRSNIPDITNEENAGLKLQEKFRLDLED EEAIHFFQDLINESVSALFPQMVETIHRWAQYWR

Transcript Sequence

Transcript ID	Os05t0180600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:4854217:4865599:-1 gene:Os05g0180600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphatidylinositol 3-kinase, root isoform. (Os05t0180600-01);Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os05t0180600-02)
Sequence	CGATCCCCAACCTCCTCCTCCTCCTCGCCGCCGACTCGCCGGCGACGCCACCTCCCTCCC AGCGCCGCCGCAACGCAAACCGTCTTGGTTGGCCTCGCGCACGTCTCTAGCGACGCCAGC TCGGCTCCTGCCTCCAGGAAATCGCGGACGTCGGCGTCGCCCAAGCAGGGCCCAGGGCGC GGCTGGTGCTGGACGCCGCCGCCGCCCCACGCTGAAGCAGGCGAAGGGAGCGTCCGGCGC AGGTCTGGACTGGGCCCGTGGTGGCGTCGCCACGCGGCGGCAATCCGCCAGCAGCGCCAT GGCGAACGGCGGCGAGTTCCGCTTCTTCCTCTCATGCGACATCAGCCTCCCGCTCGCCTT CCGCGTCGACCGCCTCCTCCACTACCCCACGCCCACCCAGCCTTCTCCTCCTCAAGATTG TACAACCTTGGCGACCAACAAGAAGGTTCCGGAGCTTGTTGTTGAGTGCAAACTCTACAT CGATGGGATACAATTCGGCTTGCCCGTGAGCACGAGGCTCGAATCGTCAGGGCCACCATA CTTCTGGAACGAGGTTATGACGCTCACCGCGAAATACAGGGATCTCACCTCCCTTTCGCA GCTTGCGTTCACGGTTTGGGATATGTCATCTGGTGAGGACGGAAATATTGTTGGTGGAGC CACCATATTTCTTTTCAACAACAAAAAGCAACTTAAAACAGGAAGGCAGAAGCTGCGACT ATGGCCCCAAAAGGAGGCAGATGGAAGAGTCCCCACCACGACTCCTGGCAAGGTACCTAA GAATGAGAGGGGTGAGATAGAGCGTTTGGAGAGGCTTGTTAATAAGCATGAAAGAGGACA GATACAACATGTAGAATGGTTGGATCGTCTTTTCTTCAGAGCCATGGACAAAGCTAAGGA GAAGTGTGAAAGAACTGAAAATTTGTACCCTAGCCTTGTTGTTGAATTTTGCAGTTTTGA ACACAGAGTTGTCTTCCAGGAATCTGGAGCAAATTTCTATGCACCAGCCCCTGTGTTGTT ATCAAATCAACTTGTTACTGTATGGGACCCTGAACTAGGAAGAACCAATCCATCTGAGCA CAAACAGTTAAAGCTTGCAAGGAGCCTAACTCGTGGAATAATTGATAAAGATCTGAAACC AAGCTCAAATGAGCGAAAGTGTCTGCAAAGAATTATCAAGTTTCCTCCTACACGCTCTTT ACAAGTGGATGAGAAGCAGCTGGTCTGGAAATTTCGGTTCTCTTTGATGTCTGAGAAGAA AGCTCTTACAAAGTTTGTTCGTGCAGTGGACTGGAGCGATATCCAAGAAGCTAAACAAGC TGTTGAATTGATTAGAAAGTGGGAAACAATTGATGTGGCTGATGCATTAGAGCTTCTCTC ACCAGACTTTGAAAGTGAGGAGGTTCGAGCTTATGCCGTCAACATACTTGAAAGGGCAGA TGATGAAGAATTACAATGCTATTTACTCCAGCTAGTGCAAGCTCTTCGGTTTGAAAGATC GGATGAGTCTTGTCTGGCACACTTTCTTGTAAAACGTGCTGTATCAAACATTGAAATTGC TAGCTTCCTTCGCTGGTATGTGGTCGTTGAGCTGCGTGACACTGCATATGCAAGACGGTA TTACAGTACATATGACTTGCTTGAAAATGGCATGATGAAATTTGCTAGGGATGATGGTGA TGAAGACGGATTTCGACTTTGGCAGAGTTTAACACGGCAGACTGAACTTATGGCTCAGTT AGGTTCTATTATGAAGGATGTAAAACAAGTTCGTGGTAGTGCACAAAAGAAAATCGATGG ATTAAGACAATTATTATCAGGAGTTTTCAGTGAGCTTACCAACTTTGATGAGCCAATTCG TTCACCATTAGCACCAACTGTTCTCCTTACTGGGGTTATACCTCAAGAATCATCTATATT TAAAAGTGCCTTGCATCCTTTGCGCCTTGCCTTTAAGACCGCAAATGGGGGAATATCGAA GATAATTTATAAAAAGGGAGATGATCTCCGCCAAGATCAGCTGGTTATTCAAATGGTCTC CTTGATGGACCGGCTGCTCAAATTAGAAAATATGGATTTACACCTTACTCCATATCGAGT TCTTGCAACTCAACCAGATGAAGGAATGCTTGAATTTATTCCTTCCAGTTCACTTGCACA GATTCTATCAGAACATCGCACTATTACAAGTTACCTACAAAAATTTCATCCTGATGAAGA TGGTCCTTTTGGTATAACTGCTCAGTGCTTGGAAACTTTCATAAAAAGCTGTGCTGGTTA CTCTGTCATTACATATATAATGGGGGTTGGAGACAGGCATCTGGATAATCTTCTTCTAAC AGATGATGGACGCCTCTTCCACGTTGATTTCGCTTTCATTCTGGGTAAAGATCCAAAGCC ATTTCCACCACCAATGAAACTATGCAAAGAAATGGTTGAGGCCATGGGTGGTGCAGAAAG CCAATACTACACGAGATTCAAGTCATACTGTTGCGAAGCATACAACATTTTAAGGAAGTC CAGTAGCCTCATATTGAATCTGTTCAACTTGATGAGAAGATCAAATATTCCAGACATCAC TAACGAGGAAAATGCAGGCCTTAAGCTTCAAGAGAAATTTCGGCTTGATCTGGAAGATGA GGAAGCCATACATTTCTTCCAAGATCTTATCAACGAAAGCGTCAGCGCTTTGTTCCCTCA GATGGTTGAGACAATCCATAGATGGGCTCAATACTGGCGCTAAGCAAAGTCGGTAACAGG CATGATTGATGTATATACGTACTAACATGCTCGCCTGCGACCGATTTATTTGCAGCAGGT TGCAGGTCTGAACTCTGAATCCATTTACATTTGTCGATAGCTTAGTTTGTGAATATACCA CGCATGCGCCTGGTTAGAAAGCTATTGAATGTAGACAGAAGTGTAATAAGGCTAGCAGTA TTAAAAAAAGAATCTTTAGCGGCAAATATAATAATGTTTTATGTGCCTCAACCCTGACAA TTTTATGCTTCTTTTTGTAAGTTTGGAGAATTCGAACGTAGAAAATAAAATAAACTATTT ATT