Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0180400-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:4831845:4835649:-1 gene:Os05g0180400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L5 domain containing protein. (Os05t0180400-01)
Sequence

ATGGCCTACCACCACCTCCTCCTCTCGCCGCCGCACCCGCACCCGGCGCGCCTCTCGCTC
GTCACCTCCCGCCGCCGCCCGCGCGCGGGCCGTGTCGCCGCCGCCTGCTCCCCGTCGCCG
TCGGCGCTGGCGGCGGGGAGGAGGGCCGTGCTCCTGGTCGGCGTCTCGGTGCTCCCGCTC
CTCCGCCTGCGCGACGCCGCCTTCGCGGCGGCCGCGGCGCGGCCGCCGTCGACGACGACG
GTGGATCTCGTCACTGATAGAATGGACACTGTGAAGACTGAGGAGACTCAACCTGAAGAA
CCTTCGGCTGAGGAATCTCTGGCTGAGGTGAAAGTACCACCTGCAGTGAATCCACTTGCA
GGTCTTCTGAATGCAATCGCAGTTATTGCTTCTGGTGTTTTTGCTGGACTTTTTGGTGCT
TCTCAAAGGGAAAAAGAGGCGTTGCAATCTACCGTCTCAACTATGGAGATCAAGTTGGCT
GAAAATGAGGCAGCAATGTCCATGCTTAGGGAAAACTATGAGAAACAGATATGGAATGAA
CATGCAGAACAAAAGAAACAGGCTAGGATGTTCCAGGAGAAGGAAGCTTCCCTTCTGGAT
CAATTGACTTTGACTAAGAGAACAGTAACATCTTTAAACGAGGAAGTGAGAAGGGAGAAA
GAACTAGTTGAGCAGCTTAAACAAGAGATACATCGACTTAAGAGTAGCATTGCACAAGCA
GAAGACGACAAACATGTGTTTGAAGGCAAACTGAGAGAGAAGTTGGAAGCACTTGATAGT
TTACAGGACAAAGTAAATCTGCTCAGCCAAGAGGTGAATGCCAAGGAGGAAGCCATCAGG
GAACTAAGCTCATCACTCTCTTCCAAGGAAGAAGACTATCAGAAGCTGCAGTTGATCTAC
AATGAAACCGAAGCAAGCCTAGAATATGCAGATTCTAAAATAGAGCAACTGGAGGAGGGT
TATTCTGCAACTAAAGATGATCTGAACTCAAAGATGTGTTCAATTGATTCATTGAATAAG
GAAGTCCAAACACTATACACTGCACAAACTGGAGCAGAAGAAAAGATAAGTGAACTAAAG
AAACAGTATGCAGACCTTGCAGCTGCTTCTGAGTTGAGGGCATCTTGTGATTCTGAACTA
CTGATCGAGAAAGATAACCTGCTCAACCAGCTTGAAGAAAAACTATCTGCTGCATTAAGT
GACACTAGTAAGAACAAAATTATAATTGCTGAGCTGAACAATGAATTGGACACCAACAGA
ACTATGCTAGATAATGAGGCTGAAGCTCATAAGAAATTATCAGAGATTCTTCAGTCCACT
GAAGGGGCACTAACAGATTACAGAGACAAGGTGTTCAACCTCTCTGAAGAGCTTAATAGA
GTGAAGATATCAAATCAGCAATTGATAACCCAGATTACGAAGTTGACAGACGAGTCCAAT
ATAGCGAAACAGGTTCTGACTAACAAAATTGCAGAGGCAGAAGCAGTTTCTAAAGTTCTT
TCAGATGAATTAGCATCAGTAAGGGATGTACTTCAAAAGACACAAGAAAAGCTTGATGTC
ACTTCTAATCAATTAGTGTCAACTATGGAAGCACGTGAGGACCTTAATAAAGAACTGCTG
GATGCATACAAGAAGTTAGAGTCTGCAACAGATGAGCTTGTTAGAGAACGTAAAATTAAT
GCTACTCTAAACAGGGAGCTTGAGGCATTGGTGGAACAATCGATTGTAGAATCTGAAGCA
CGACAAGCTCTTCAAGCAGACCTTGATGAGGTGACCAATTCACAAAAAGAGGTGGATGAG
AGTACACAGTTCCTGTCTGAGAGGCTGGATAGCGCAAATTCTAGGATTTCTTCTATTGAA
CAAGAGAAAGAGATGCTTTCAGAGGCTCTTGAGCAACAAAAGAGAAGTACAATGGAAGCT
CAGAAAGATATGGAGGATGCTCAGAATCTTATGAGAATGATTGGAACGGAGAGGGAGAAT
TTTGAAACGATGTCTAAGAAACTTGAAGAGGAATTGGCCACAGCAAAAGGTGAGATATTG
AGACTGAGGCGGCAGATCAGCGCAAGTGGATATCTGAGAACAGAACTTGCGGAAACAAGT
GTGACATCAAATACCTCTCAACCTGAGCAAGATGTGAATGACCCTGATCAGAGTAGCAAC
AATACCGGTGCTGGAGACACTCGTTCTCCTACAAGGATTTATAGGAGAAGAAAAACTAAA
CGGGCTACATGA

Peptide Sequence

PEP ID

Os05t0180400-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:4831845:4835649:-1 gene:Os05g0180400 transcript:Os05t0180400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L5 domain containing protein. (Os05t0180400-01)
Sequence

MAYHHLLLSPPHPHPARLSLVTSRRRPRAGRVAAACSPSPSALAAGRRAVLLVGVSVLPL
LRLRDAAFAAAAARPPSTTTVDLVTDRMDTVKTEETQPEEPSAEESLAEVKVPPAVNPLA
GLLNAIAVIASGVFAGLFGASQREKEALQSTVSTMEIKLAENEAAMSMLRENYEKQIWNE
HAEQKKQARMFQEKEASLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHRLKSSIAQA
EDDKHVFEGKLREKLEALDSLQDKVNLLSQEVNAKEEAIRELSSSLSSKEEDYQKLQLIY
NETEASLEYADSKIEQLEEGYSATKDDLNSKMCSIDSLNKEVQTLYTAQTGAEEKISELK
KQYADLAAASELRASCDSELLIEKDNLLNQLEEKLSAALSDTSKNKIIIAELNNELDTNR
TMLDNEAEAHKKLSEILQSTEGALTDYRDKVFNLSEELNRVKISNQQLITQITKLTDESN
IAKQVLTNKIAEAEAVSKVLSDELASVRDVLQKTQEKLDVTSNQLVSTMEAREDLNKELL
DAYKKLESATDELVRERKINATLNRELEALVEQSIVESEARQALQADLDEVTNSQKEVDE
STQFLSERLDSANSRISSIEQEKEMLSEALEQQKRSTMEAQKDMEDAQNLMRMIGTEREN
FETMSKKLEEELATAKGEILRLRRQISASGYLRTELAETSVTSNTSQPEQDVNDPDQSSN
NTGAGDTRSPTRIYRRRKTKRAT

Transcript Sequence

Transcript ID

Os05t0180400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:4831845:4835649:-1 gene:Os05g0180400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L5 domain containing protein. (Os05t0180400-01)
Sequence

GGCGAGCCCGCCTACTCCTGCTCCTGCTGCTCCGCTTCCGCGCCGCCGCCGCCGCCGCCG
AGCAGCGACAGCGAGGGCGCTGAGGGGGCTAGGGTTTTAGCTCTCGGCGGCCATGGCCTA
CCACCACCTCCTCCTCTCGCCGCCGCACCCGCACCCGGCGCGCCTCTCGCTCGTCACCTC
CCGCCGCCGCCCGCGCGCGGGCCGTGTCGCCGCCGCCTGCTCCCCGTCGCCGTCGGCGCT
GGCGGCGGGGAGGAGGGCCGTGCTCCTGGTCGGCGTCTCGGTGCTCCCGCTCCTCCGCCT
GCGCGACGCCGCCTTCGCGGCGGCCGCGGCGCGGCCGCCGTCGACGACGACGGTGGATCT
CGTCACTGATAGAATGGACACTGTGAAGACTGAGGAGACTCAACCTGAAGAACCTTCGGC
TGAGGAATCTCTGGCTGAGGTGAAAGTACCACCTGCAGTGAATCCACTTGCAGGTCTTCT
GAATGCAATCGCAGTTATTGCTTCTGGTGTTTTTGCTGGACTTTTTGGTGCTTCTCAAAG
GGAAAAAGAGGCGTTGCAATCTACCGTCTCAACTATGGAGATCAAGTTGGCTGAAAATGA
GGCAGCAATGTCCATGCTTAGGGAAAACTATGAGAAACAGATATGGAATGAACATGCAGA
ACAAAAGAAACAGGCTAGGATGTTCCAGGAGAAGGAAGCTTCCCTTCTGGATCAATTGAC
TTTGACTAAGAGAACAGTAACATCTTTAAACGAGGAAGTGAGAAGGGAGAAAGAACTAGT
TGAGCAGCTTAAACAAGAGATACATCGACTTAAGAGTAGCATTGCACAAGCAGAAGACGA
CAAACATGTGTTTGAAGGCAAACTGAGAGAGAAGTTGGAAGCACTTGATAGTTTACAGGA
CAAAGTAAATCTGCTCAGCCAAGAGGTGAATGCCAAGGAGGAAGCCATCAGGGAACTAAG
CTCATCACTCTCTTCCAAGGAAGAAGACTATCAGAAGCTGCAGTTGATCTACAATGAAAC
CGAAGCAAGCCTAGAATATGCAGATTCTAAAATAGAGCAACTGGAGGAGGGTTATTCTGC
AACTAAAGATGATCTGAACTCAAAGATGTGTTCAATTGATTCATTGAATAAGGAAGTCCA
AACACTATACACTGCACAAACTGGAGCAGAAGAAAAGATAAGTGAACTAAAGAAACAGTA
TGCAGACCTTGCAGCTGCTTCTGAGTTGAGGGCATCTTGTGATTCTGAACTACTGATCGA
GAAAGATAACCTGCTCAACCAGCTTGAAGAAAAACTATCTGCTGCATTAAGTGACACTAG
TAAGAACAAAATTATAATTGCTGAGCTGAACAATGAATTGGACACCAACAGAACTATGCT
AGATAATGAGGCTGAAGCTCATAAGAAATTATCAGAGATTCTTCAGTCCACTGAAGGGGC
ACTAACAGATTACAGAGACAAGGTGTTCAACCTCTCTGAAGAGCTTAATAGAGTGAAGAT
ATCAAATCAGCAATTGATAACCCAGATTACGAAGTTGACAGACGAGTCCAATATAGCGAA
ACAGGTTCTGACTAACAAAATTGCAGAGGCAGAAGCAGTTTCTAAAGTTCTTTCAGATGA
ATTAGCATCAGTAAGGGATGTACTTCAAAAGACACAAGAAAAGCTTGATGTCACTTCTAA
TCAATTAGTGTCAACTATGGAAGCACGTGAGGACCTTAATAAAGAACTGCTGGATGCATA
CAAGAAGTTAGAGTCTGCAACAGATGAGCTTGTTAGAGAACGTAAAATTAATGCTACTCT
AAACAGGGAGCTTGAGGCATTGGTGGAACAATCGATTGTAGAATCTGAAGCACGACAAGC
TCTTCAAGCAGACCTTGATGAGGTGACCAATTCACAAAAAGAGGTGGATGAGAGTACACA
GTTCCTGTCTGAGAGGCTGGATAGCGCAAATTCTAGGATTTCTTCTATTGAACAAGAGAA
AGAGATGCTTTCAGAGGCTCTTGAGCAACAAAAGAGAAGTACAATGGAAGCTCAGAAAGA
TATGGAGGATGCTCAGAATCTTATGAGAATGATTGGAACGGAGAGGGAGAATTTTGAAAC
GATGTCTAAGAAACTTGAAGAGGAATTGGCCACAGCAAAAGGTGAGATATTGAGACTGAG
GCGGCAGATCAGCGCAAGTGGATATCTGAGAACAGAACTTGCGGAAACAAGTGTGACATC
AAATACCTCTCAACCTGAGCAAGATGTGAATGACCCTGATCAGAGTAGCAACAATACCGG
TGCTGGAGACACTCGTTCTCCTACAAGGATTTATAGGAGAAGAAAAACTAAACGGGCTAC
ATGAGCATTATAAGAACACCGCAAGCTAGAATATCGTCCTTGTGTTCCTCTGGTTATTCA
CCTTACAAAAACATTATTTGAAACTTTGAACCTAGAATATCGTCCTCTCCGGTTGTTCTC
TTGTCTCTAGAGAAACCATTGGTGTAGTTCTGTGAGTTCCGATCAAGTCTGAATGTAGTG
GAGTACTCCCTCCGTTTC