Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0178900-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:4704697:4708657:1 gene:Os05g0178900 gene_biotype:protein_coding transcript_biotype:protein_coding description:PRP38 family protein. (Os05t0178900-01);PRP38 family protein. (Os05t0178900-02)
Sequence	ATGGAGATACAAACTTCAGGGAAGCCCATTGATCTGCTGATGGAGAAGGTTCTTTGTATG AACATTATGTCTTCTGATTACTTCAAGGAGCTCTACAGGCTGAAGACCTATCATGAGGTC ATTGATGAAATATACAATCAAGTTGATCATGTGGAGCCTTGGATGACTGGCAATTGCAGG GGCCCCTCCACTGCATTCTGTCTCCTCTACAAGTTCTTCACCATGAAGCTTACTGTCAAA CAGATGCATGGTTTGTTGAAGCATCCTGATTCCCCATACATTAGAGCTATAGGGTTCTTG TATCTTCGATATGTTGCAGATCCGAAGATCTTGTGGACGTGGTATGAGCCCTACTTGAAG GATGATGAGGAATTCTCCCCTGGATCTAATGGTCGCATGACAACCATGGGTGTTTATGTG CGTGATCTTATACTTGGACAGTACTACTTCGATAGTCTTCTTCCAAGAGTTCCTCTTCCA GTAATTCGTCAAGTGACATCCAATCTTGAGAAGATGAAGTTGCCCACTAAGCTTTCTGGG ATTACTGGAGAGTCTAATCGTCATGGATCAGAAGATACTGCCCGCCGGCCTCCTTCCGTG AAGGCTTCTCTGTCAGTTTCCTTTGGACAGCGTGCTCCGCATCGTGCATCCACACGGGAG TCATCTCCAGTTCGGAGGACAGTCACCCATGATGGCCATCGTAAATCTTCCTCACCATCT CGCCGTAGCGGAAGCCGCGAGGTTCCTGATCGTGATCGATCAAGCCGTGACCGTTCTAGT CGTGACTATGACCGTTCAAGCCATGACCGTGATCGTGACCATTCCAGTCGTGACTATGAC CGTCCAAGCCATGACCGTGACCGTGATCGTGACCGTTCCAGTCGTGACTATGACCGTTCA AGTCGTGACCGGGATCATGATAGAGACATCAGAGACTATCATCGGCGTGATCGTGACAGC AGGGACCGTGACTATAGGTCTAGGCATTCATCCGAAAGACAAGATGACCGAAGGGACCGT GACCGTGAGGGTAGCAGGCACAGACGGTCCAGCTCTCGGCACAGAAGCAGAAGCCGCAGC CGCAGCCGCAGCCGCAGCAGAAGCAGGAGCCGCAGCAGAAATGAGGAGAGATCCAGTCCT TTTGGCAATGCAGGCAAAGAAAAGACTGCTGCCATCTCGAGCAACCTAGCAAAGCTCAAG GACTTGTATGGTGATGTAACTGAGAAGAAGGACGACGGTGAAGCCCCTCGCCGTGATTCG TGCGCGGAGGAGGTTATCAGGTTGGGTGGCCCGAGATGGAGATAG

Peptide Sequence

PEP ID	Os05t0178900-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:4704697:4708657:1 gene:Os05g0178900 transcript:Os05t0178900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:PRP38 family protein. (Os05t0178900-01);PRP38 family protein. (Os05t0178900-02)
Sequence	MEIQTSGKPIDLLMEKVLCMNIMSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLK DDEEFSPGSNGRMTTMGVYVRDLILGQYYFDSLLPRVPLPVIRQVTSNLEKMKLPTKLSG ITGESNRHGSEDTARRPPSVKASLSVSFGQRAPHRASTRESSPVRRTVTHDGHRKSSSPS RRSGSREVPDRDRSSRDRSSRDYDRSSHDRDRDHSSRDYDRPSHDRDRDRDRSSRDYDRS SRDRDHDRDIRDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREGSRHRRSSSRHRSRSRS RSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISSNLAKLKDLYGDVTEKKDDGEAPRRDS CAEEVIRLGGPRWR

Transcript Sequence

Transcript ID	Os05t0178900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:4704697:4708657:1 gene:Os05g0178900 gene_biotype:protein_coding transcript_biotype:protein_coding description:PRP38 family protein. (Os05t0178900-01);PRP38 family protein. (Os05t0178900-02)
Sequence	AGGGTTTCGCCCATCTTCCGGAGGCGCGCCTCGCCGCCGCCACCGCGGCGATCCCGCTCC GTCCCCTGCAACCGACCTCCCGCTCGACCAGGGCCGTCAAGCCTTCATCCACGCGCGAGC GGCGTCGCGTAGGCGGGGGGTCCGAGCGAGCGCTGAGCGAGGCGTCCGGAGGGGATCGAT CCATCCCGCTCTAGGGTTCGCGAGCGTCTCGCGTTTGCATTCGCTGAAAGATGGAGATAC AAACTTCAGGGAAGCCCATTGATCTGCTGATGGAGAAGGTTCTTTGTATGAACATTATGT CTTCTGATTACTTCAAGGAGCTCTACAGGCTGAAGACCTATCATGAGGTCATTGATGAAA TATACAATCAAGTTGATCATGTGGAGCCTTGGATGACTGGCAATTGCAGGGGCCCCTCCA CTGCATTCTGTCTCCTCTACAAGTTCTTCACCATGAAGCTTACTGTCAAACAGATGCATG GTTTGTTGAAGCATCCTGATTCCCCATACATTAGAGCTATAGGGTTCTTGTATCTTCGAT ATGTTGCAGATCCGAAGATCTTGTGGACGTGGTATGAGCCCTACTTGAAGGATGATGAGG AATTCTCCCCTGGATCTAATGGTCGCATGACAACCATGGGTGTTTATGTGCGTGATCTTA TACTTGGACAGTACTACTTCGATAGTCTTCTTCCAAGAGTTCCTCTTCCAGTAATTCGTC AAGTGACATCCAATCTTGAGAAGATGAAGTTGCCCACTAAGCTTTCTGGGATTACTGGAG AGTCTAATCGTCATGGATCAGAAGATACTGCCCGCCGGCCTCCTTCCGTGAAGGCTTCTC TGTCAGTTTCCTTTGGACAGCGTGCTCCGCATCGTGCATCCACACGGGAGTCATCTCCAG TTCGGAGGACAGTCACCCATGATGGCCATCGTAAATCTTCCTCACCATCTCGCCGTAGCG GAAGCCGCGAGGTTCCTGATCGTGATCGATCAAGCCGTGACCGTTCTAGTCGTGACTATG ACCGTTCAAGCCATGACCGTGATCGTGACCATTCCAGTCGTGACTATGACCGTCCAAGCC ATGACCGTGACCGTGATCGTGACCGTTCCAGTCGTGACTATGACCGTTCAAGTCGTGACC GGGATCATGATAGAGACATCAGAGACTATCATCGGCGTGATCGTGACAGCAGGGACCGTG ACTATAGGTCTAGGCATTCATCCGAAAGACAAGATGACCGAAGGGACCGTGACCGTGAGG GTAGCAGGCACAGACGGTCCAGCTCTCGGCACAGAAGCAGAAGCCGCAGCCGCAGCCGCA GCCGCAGCAGAAGCAGGAGCCGCAGCAGAAATGAGGAGAGATCCAGTCCTTTTGGCAATG CAGGCAAAGAAAAGACTGCTGCCATCTCGAGCAACCTAGCAAAGCTCAAGGACTTGTATG GTGATGTAACTGAGAAGAAGGACGACGGTGAAGCCCCTCGCCGTGATTCGTGCGCGGAGG AGGTTATCAGGTTGGGTGGCCCGAGATGGAGATAGAATTTGTGACTGTAACCCTGTTGTT CCTCAAAGAACCTGATATGTTGTCAGTACACCTTTTCTTTCATCTGCCAGTTTCTCAAGA AACTTGTTAATACTTGGCATCTCAAAACACCTTACTATAATATGTCAACAATGGTAGTTT GTATGGTATGGATGGATGACATTGATACATGTTGGTTCCCTATGTTTTAGTATTATACCG AACTGTTACTTATCCCATGGAGCTAATTCTTTATTTCATTTTCACATTTGAATTGGATTA GAAGATGCCAAGCT