Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0178100-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:4660662:4662565:-1 gene:Os05g0178100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GIBBERELLIN 3BETA-HYDROXYLASE 1 description:GA 3beta-hydroxylase1, GA metabolism (Os05t0178100-01)
Sequence

ATGACATCGTCGTCGACCTCGCCGACCTCGCCGACCTCGCCGCTGGCCGCCGCCGCCGAC
AATGGCGTCGCCGCCGCCTACTTCAACTTCCGCGGGGCGGAGCGCGTGCCGGAGTCGCAC
GTGTGGAAGGGGATGCACGAGAAGGACACCGCGCCGGTGGCGGCGGCGGACGCGGACGGC
GGCGACGCGGTGCCGGTGGTGGACATGAGCGGCGGCGACGACGCCGCGGTGGCGGCGGTG
GCGCGCGCGGCGGAGGAGTGGGGCGGGTTCCTGCTCGTCGGGCACGGCGTGACCGCGGAG
GCCCTGGCGCGCGTCGAGGCGCAGGCGGCGCGGCTGTTCGCGCTGCCGGCGGACGACAAG
GCGCGCGGGGCGCGGCGGCCCGGCGGCGGGAACACCGGCTACGGCGTGCCGCCGTACCTC
CTCCGGTACCCGAAGCAGATGTGGGCCGAGGGCTACACCTTCCCTCCCCCTGCCATCCGC
GACGAGTTCCGCCGCGTCTGGCCCGACGCCGGCGACGACTACCACCGCTTCTGCTCCGCC
ATGGAGGAGTACGACTCGTCGATGAGAGCTCTGGGCGAGAGGCTCCTCGCCATGTTCTTC
AAGGCGCTCGGGCTCGCCGGCAACGATGCCCCCGGCGGCGAGACCGAGCGGAAGATCCGC
GAAACGTTGACGTCGACGATTCACCTCAACATGTTCCCTAGGTGTCCAGATCCAGACCGG
GTGGTCGGGCTGGCGGCGCACACGGACTCAGGCTTCTTCACCTTCATCCTGCAGAGCCCC
GTGCCGGGGTTGCAGCTGCTCCGCCACCGGCCGGACCGGTGGGTGACGGTTCCGGGGACG
CCGGGGGCGCTCATCGTCGTCGTCGGCGATCTCTTCCATGTGCTCACCAACGGGCGCTTC
CACAGCGTGTTCCACCGCGCCGTCGTGAACCGGGAGAGAGACCGGATCTCCATGCCCTAC
TTCCTCGGTCCGCCGGCCGACATGAAGGTGACACCTCTCGTGGCGGCGGGGTCGCCGGAG
AGCAAGGCCGTGTATCAGGCCGTGACATGGCCGGAGTACATGGCTGTAAGGGATAAGTTG
TTCGGGACAAATATATCGGCGTTGAGCATGATTCGAGTAGCGAAGGAAGAGGACAAGGAG
AGTTAG

Peptide Sequence

PEP ID

Os05t0178100-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:4660662:4662565:-1 gene:Os05g0178100 transcript:Os05t0178100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GIBBERELLIN 3BETA-HYDROXYLASE 1 description:GA 3beta-hydroxylase1, GA metabolism (Os05t0178100-01)
Sequence

MTSSSTSPTSPTSPLAAAADNGVAAAYFNFRGAERVPESHVWKGMHEKDTAPVAAADADG
GDAVPVVDMSGGDDAAVAAVARAAEEWGGFLLVGHGVTAEALARVEAQAARLFALPADDK
ARGARRPGGGNTGYGVPPYLLRYPKQMWAEGYTFPPPAIRDEFRRVWPDAGDDYHRFCSA
MEEYDSSMRALGERLLAMFFKALGLAGNDAPGGETERKIRETLTSTIHLNMFPRCPDPDR
VVGLAAHTDSGFFTFILQSPVPGLQLLRHRPDRWVTVPGTPGALIVVVGDLFHVLTNGRF
HSVFHRAVVNRERDRISMPYFLGPPADMKVTPLVAAGSPESKAVYQAVTWPEYMAVRDKL
FGTNISALSMIRVAKEEDKES

Transcript Sequence

Transcript ID

Os05t0178100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:4660662:4662565:-1 gene:Os05g0178100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GIBBERELLIN 3BETA-HYDROXYLASE 1 description:GA 3beta-hydroxylase1, GA metabolism (Os05t0178100-01)
Sequence

GTGCGTTAGCCAACGAGTTCATGCAGATCATGACATCGTCGTCGACCTCGCCGACCTCGC
CGACCTCGCCGCTGGCCGCCGCCGCCGACAATGGCGTCGCCGCCGCCTACTTCAACTTCC
GCGGGGCGGAGCGCGTGCCGGAGTCGCACGTGTGGAAGGGGATGCACGAGAAGGACACCG
CGCCGGTGGCGGCGGCGGACGCGGACGGCGGCGACGCGGTGCCGGTGGTGGACATGAGCG
GCGGCGACGACGCCGCGGTGGCGGCGGTGGCGCGCGCGGCGGAGGAGTGGGGCGGGTTCC
TGCTCGTCGGGCACGGCGTGACCGCGGAGGCCCTGGCGCGCGTCGAGGCGCAGGCGGCGC
GGCTGTTCGCGCTGCCGGCGGACGACAAGGCGCGCGGGGCGCGGCGGCCCGGCGGCGGGA
ACACCGGCTACGGCGTGCCGCCGTACCTCCTCCGGTACCCGAAGCAGATGTGGGCCGAGG
GCTACACCTTCCCTCCCCCTGCCATCCGCGACGAGTTCCGCCGCGTCTGGCCCGACGCCG
GCGACGACTACCACCGCTTCTGCTCCGCCATGGAGGAGTACGACTCGTCGATGAGAGCTC
TGGGCGAGAGGCTCCTCGCCATGTTCTTCAAGGCGCTCGGGCTCGCCGGCAACGATGCCC
CCGGCGGCGAGACCGAGCGGAAGATCCGCGAAACGTTGACGTCGACGATTCACCTCAACA
TGTTCCCTAGGTGTCCAGATCCAGACCGGGTGGTCGGGCTGGCGGCGCACACGGACTCAG
GCTTCTTCACCTTCATCCTGCAGAGCCCCGTGCCGGGGTTGCAGCTGCTCCGCCACCGGC
CGGACCGGTGGGTGACGGTTCCGGGGACGCCGGGGGCGCTCATCGTCGTCGTCGGCGATC
TCTTCCATGTGCTCACCAACGGGCGCTTCCACAGCGTGTTCCACCGCGCCGTCGTGAACC
GGGAGAGAGACCGGATCTCCATGCCCTACTTCCTCGGTCCGCCGGCCGACATGAAGGTGA
CACCTCTCGTGGCGGCGGGGTCGCCGGAGAGCAAGGCCGTGTATCAGGCCGTGACATGGC
CGGAGTACATGGCTGTAAGGGATAAGTTGTTCGGGACAAATATATCGGCGTTGAGCATGA
TTCGAGTAGCGAAGGAAGAGGACAAGGAGAGTTAGAACTATGGTATGATTGCAATTATCC
ATGCCAGAAAAAAAAAATTAGGGATATGATTTGTTGTGCTAAAATAAGGAAGGCAAATTT
TAATTATAAGCAAGTATAGGTAGTTTTCCCTTGAATAAACTTTTTTTCTTAACAGCTTTC
ATAAATTGGAAAGGTGAATACTGACCTGATGAGAGTTTCACTGTAGAACCAGGACAAGGA
ATAAGGAATAAGTTGAGGCAACCTGAACAATGCT