Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0176100-05
CDS Infomation	cds chromosome:IRGSP-1.0:5:4565244:4571355:-1 gene:Os05g0176100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A1 description:Similar to Cellulose synthase BoCesA1. (Os05t0176100-01);Similar to RSW1-like cellulose synthase catalytic subunit (Fragment). (Os05t0176100-05);Similar to Cellulose synthase BoCesA1. (Os05t0176100-06);Similar to Cellulose synthase BoCesA8. (Os05t0176100-07)
Sequence	ATGGCGGCGAACGCGGGGATGGTGGCGGGATCCCGCAACCGGAACGAGTTCGTCATGATC CGCCCCGACGGCGACGCGCCACCGCCGGCTAAGCCAGGGAAGAGTGTGAATGGTCAGGTC TGCCAGATTTGTGGCGACACTGTTGGCGTCTCGGCCACCGGCGACGTCTTTGTTGCCTGC AATGAGTGCGCCTTCCCGGTCTGCCGCCCTTGCTACGAGTACGAGCGCAAGGAAGGGAAC CAGTGCTGCCCCCAGTGCAAGACTAGATACAAGAGGCACAAAGGTAGCCCTAGAGTTCAG GGCGATGAGGAGGAGGAAGATGTTGATGACCTGGACAATGAATTCAATTATAAGCATGGC AATGGCAAAGGTCCAGAGTGGCAGATACAGAGACAGGGGGAAGATGTTGACCTGTCTTCA TCTTCTCGCCACGAACAACATCGGATTCCCCGTCTGACAAGTGGGCAACAGATCTCAGGA GAGATCCCTGATGCTTCCCCCGATCGCCATTCTATCCGCAGCGGAACATCAAGCTATGTT GATCCAAGTGTTCCAGTTCCTGTGAGGATTGTGGACCCCTCCAAGGACTTGAATTCCTAT GGGATTAACAGTGTTGACTGGCAAGAAAGAGTTGCCAGCTGGAGGAACAAGCAGGACAAA AATATGATGCAGGTAGCTAATAAATATCCAGAGGCAAGAGGGGGAGACATGGAAGGGACT GGTTCAAATGGTGAAGATATGCAAATGGTTGATGATGCACGTCTACCTCTGAGCCGCATA GTGCCTATCCCTTCAAACCAGCTCAACCTTTACCGGATTGTTATCATTCTCCGTCTTATC ATCCTGATGTTCTTCTTCCAATATCGTGTCACTCATCCAGTGCGGGATGCTTATGGATTG TGGCTAGTATCTGTTATCTGTGAAATTTGGTTTGCCTTATCCTGGCTCCTAGATCAATTC CCAAAGTGGTACCCGATAAACCGTGAAACATACCTTGACAGGCTTGCATTGAGATATGAT AGGGAGGGAGAGCCATCACAGCTTGCTCCCATTGATGTCTTTGTCAGTACGGTGGATCCA CTAAAGGAACCTCCTCTGATCACAGCAAACACTGTTTTGTCCATTCTGGCTGTGGATTAC CCTGTTGACAAAGTGTCATGCTATGTTTCTGACGATGGTTCAGCTATGTTAACTTTTGAG GCTCTGTCAGAAACTGCAGAATTTGCTAGGAAGTGGGTTCCGTTTTGCAAGAAGCACAAT ATTGAACCACGAGCTCCAGAGTTTTACTTTGCTCAAAAAATAGATTACCTGAAGGACAAA ATCCAACCTTCCTTTGTTAAAGAAAGGCGGGCAATGAAGAGAGAGTATGAAGAATTCAAG GTACGGATCAATGCTCTTGTTGCGAAGGCACAAAAAGTACCTGAAGAGGGGTGGACCATG GCTGATGGCACTGCTTGGCCTGGGAATAACCCAAGGGATCACCCTGGCATGATTCAGGTG TTCTTGGGGCACAGTGGTGGGCTTGACACTGATGGTAACGAGTTGCCACGGCTTGTCTAC GTCTCTCGTGAAAAGAGGCCAGGATTCCAGCATCACAAGAAGGCTGGTGCAATGAATGCA TTGATTCGTGTATCTGCTGTGCTGACAAATGGTGCCTATCTTCTCAATGTGGATTGTGAT CACTACTTCAACAGTAGCAAAGCTCTTAGAGAAGCAATGTGCTTCATGATGGATCCCGCA CTAGGAAGGAAAACTTGTTATGTTCAGTTCCCACAAAGATTTGATGGCATTGACTTGCAC GATCGATACGCTAATCGCAACATAGTCTTCTTTGATATTAACATGAAAGGTTTAGATGGC ATTCAGGGTCCAGTTTATGTGGGAACAGGTTGCTGCTTCAATAGGCAGGCCTTGTATGGC TATGATCCTGTACTAACTGAGGCTGATTTGGAACCTAACATTGTTGTTAAGAGCTGCTGT GGTGGCAGAAAGAAAAAGAGCAAGAGCTACATGGATAGCAAAAACCGTATGATGAAGAGA ACAGAGTCTTCAGCTCCTATCTTTAACATGGAAGATATAGAAGAGGGCATTGAAGGTTAT GAAGATGAAAGGTCAGTGCTGATGTCCCAGAAGAGATTAGAGAAACGTTTTGGTCAATCG CCAATTTTTATTGCGTCCACCTTCATGACTCAAGGAGGCATACCACCCTCAACGAACCCA GCATCTCTACTGAAGGAAGCCATCCATGTTATCAGTTGTGGATATGAGGACAAAACTGAA TGGGGAAAAGAGATTGGCTGGATCTATGGTTCAGTTACTGAGGATATTCTGACTGGATTT AAAATGCACGCAAGAGGTTGGATATCAATCTATTGCATGCCACCACGGCCATGCTTCAAG GGTTCTGCGCCAATCAATCTGTCTGATCGTCTTAACCAAGTGCTACGTTGGGCTCTTGGG TCTGTTGAGATTCTGCTTAGCAGACATTGTCCTATCTGGTATGGTTACAATGGGCGTTTG AAACTTCTGGAGAGGCTGGCTTACATTAACACCATTGTTTATCCAATTACATCCATTCCA CTTATCGCCTATTGTGTGCTTCCTGCTATCTGTCTCCTCACCAACAAATTTATCATTCCT GAGATTAGCAATTATGCTGGGATGTTCTTTATTCTGCTTTTCGCCTCCATTTTCGCAACT GGTATTCTGGAGCTCCGATGGAGTGGTGTTGGTATCGAGGACTGGTGGAGAAATGAACAG TTCTGGGTCATTGGTGGCACATCTGCCCATCTCTTCGCTGTGTTCCAGGGTCTTCTGAAA GTGTTAGCAGGAATTGATACCAACTTCACTGTTACCTCAAAGGCGTCCGATGAGGATGGT GACTTTGCTGAGCTATACGTGTTCAAGTGGACCAGTCTCCTCATTCCCCCGACCACCGTG CTTGTCATCAACCTGGTGGGCATGGTGGCGGGTATATCATATGCCATTAACAGCGGTTAC CAATCATGGGGTCCTCTCTTTGGAAAGCTCTTCTTCTCCATCTGGGTGATCCTCCATCTC TACCCCTTCCTCAAGGGTCTCATGGGCAGGCAGAACCGCACTCCGACCATCGTCATCGTC TGGTCGATCCTCCTCGCGTCGATCTTCTCCCTTCTGTGGGTCAAGATCGATCCTTTCATT TCGCCTACTCAGAAAGCCGTCGCCTTGGGGCAATGCGGTGTGAACTGCTGA

Peptide Sequence

PEP ID	Os05t0176100-05
PEP Infomation	pep chromosome:IRGSP-1.0:5:4565244:4571355:-1 gene:Os05g0176100 transcript:Os05t0176100-05 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A1 description:Similar to Cellulose synthase BoCesA1. (Os05t0176100-01);Similar to RSW1-like cellulose synthase catalytic subunit (Fragment). (Os05t0176100-05);Similar to Cellulose synthase BoCesA1. (Os05t0176100-06);Similar to Cellulose synthase BoCesA8. (Os05t0176100-07)
Sequence	MAANAGMVAGSRNRNEFVMIRPDGDAPPPAKPGKSVNGQVCQICGDTVGVSATGDVFVAC NECAFPVCRPCYEYERKEGNQCCPQCKTRYKRHKGSPRVQGDEEEEDVDDLDNEFNYKHG NGKGPEWQIQRQGEDVDLSSSSRHEQHRIPRLTSGQQISGEIPDASPDRHSIRSGTSSYV DPSVPVPVRIVDPSKDLNSYGINSVDWQERVASWRNKQDKNMMQVANKYPEARGGDMEGT GSNGEDMQMVDDARLPLSRIVPIPSNQLNLYRIVIILRLIILMFFFQYRVTHPVRDAYGL WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDP LKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHN IEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWTM ADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNA LIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLH DRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIVVKSCC GGRKKKSKSYMDSKNRMMKRTESSAPIFNMEDIEEGIEGYEDERSVLMSQKRLEKRFGQS PIFIASTFMTQGGIPPSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGF KMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRL KLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFAT GILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG DFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHL YPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC

Transcript Sequence

Transcript ID	Os05t0176100-05
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:4565244:4571355:-1 gene:Os05g0176100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A1 description:Similar to Cellulose synthase BoCesA1. (Os05t0176100-01);Similar to RSW1-like cellulose synthase catalytic subunit (Fragment). (Os05t0176100-05);Similar to Cellulose synthase BoCesA1. (Os05t0176100-06);Similar to Cellulose synthase BoCesA8. (Os05t0176100-07)
Sequence	AGTGGAGCGCGAGCTGAAGAGGAGGAGGGGAGTGGAGGAGGCGGCGCTGCAGATCTGGAG GCGGAGCGGCGAATGGTGGTGTCGCCGGCGGCCGCCGCGATCTAGGCTTGCCGCGCGCGC GCGGATCTGCGAGCTGCGTAGCCGTTTCTCGCTGTGAGTGGAGGAGGAGGAGGAAGGGGA GGAGGATGGCGGCGAACGCGGGGATGGTGGCGGGATCCCGCAACCGGAACGAGTTCGTCA TGATCCGCCCCGACGGCGACGCGCCACCGCCGGCTAAGCCAGGGAAGAGTGTGAATGGTC AGGTCTGCCAGATTTGTGGCGACACTGTTGGCGTCTCGGCCACCGGCGACGTCTTTGTTG CCTGCAATGAGTGCGCCTTCCCGGTCTGCCGCCCTTGCTACGAGTACGAGCGCAAGGAAG GGAACCAGTGCTGCCCCCAGTGCAAGACTAGATACAAGAGGCACAAAGGTAGCCCTAGAG TTCAGGGCGATGAGGAGGAGGAAGATGTTGATGACCTGGACAATGAATTCAATTATAAGC ATGGCAATGGCAAAGGTCCAGAGTGGCAGATACAGAGACAGGGGGAAGATGTTGACCTGT CTTCATCTTCTCGCCACGAACAACATCGGATTCCCCGTCTGACAAGTGGGCAACAGATCT CAGGAGAGATCCCTGATGCTTCCCCCGATCGCCATTCTATCCGCAGCGGAACATCAAGCT ATGTTGATCCAAGTGTTCCAGTTCCTGTGAGGATTGTGGACCCCTCCAAGGACTTGAATT CCTATGGGATTAACAGTGTTGACTGGCAAGAAAGAGTTGCCAGCTGGAGGAACAAGCAGG ACAAAAATATGATGCAGGTAGCTAATAAATATCCAGAGGCAAGAGGGGGAGACATGGAAG GGACTGGTTCAAATGGTGAAGATATGCAAATGGTTGATGATGCACGTCTACCTCTGAGCC GCATAGTGCCTATCCCTTCAAACCAGCTCAACCTTTACCGGATTGTTATCATTCTCCGTC TTATCATCCTGATGTTCTTCTTCCAATATCGTGTCACTCATCCAGTGCGGGATGCTTATG GATTGTGGCTAGTATCTGTTATCTGTGAAATTTGGTTTGCCTTATCCTGGCTCCTAGATC AATTCCCAAAGTGGTACCCGATAAACCGTGAAACATACCTTGACAGGCTTGCATTGAGAT ATGATAGGGAGGGAGAGCCATCACAGCTTGCTCCCATTGATGTCTTTGTCAGTACGGTGG ATCCACTAAAGGAACCTCCTCTGATCACAGCAAACACTGTTTTGTCCATTCTGGCTGTGG ATTACCCTGTTGACAAAGTGTCATGCTATGTTTCTGACGATGGTTCAGCTATGTTAACTT TTGAGGCTCTGTCAGAAACTGCAGAATTTGCTAGGAAGTGGGTTCCGTTTTGCAAGAAGC ACAATATTGAACCACGAGCTCCAGAGTTTTACTTTGCTCAAAAAATAGATTACCTGAAGG ACAAAATCCAACCTTCCTTTGTTAAAGAAAGGCGGGCAATGAAGAGAGAGTATGAAGAAT TCAAGGTACGGATCAATGCTCTTGTTGCGAAGGCACAAAAAGTACCTGAAGAGGGGTGGA CCATGGCTGATGGCACTGCTTGGCCTGGGAATAACCCAAGGGATCACCCTGGCATGATTC AGGTGTTCTTGGGGCACAGTGGTGGGCTTGACACTGATGGTAACGAGTTGCCACGGCTTG TCTACGTCTCTCGTGAAAAGAGGCCAGGATTCCAGCATCACAAGAAGGCTGGTGCAATGA ATGCATTGATTCGTGTATCTGCTGTGCTGACAAATGGTGCCTATCTTCTCAATGTGGATT GTGATCACTACTTCAACAGTAGCAAAGCTCTTAGAGAAGCAATGTGCTTCATGATGGATC CCGCACTAGGAAGGAAAACTTGTTATGTTCAGTTCCCACAAAGATTTGATGGCATTGACT TGCACGATCGATACGCTAATCGCAACATAGTCTTCTTTGATATTAACATGAAAGGTTTAG ATGGCATTCAGGGTCCAGTTTATGTGGGAACAGGTTGCTGCTTCAATAGGCAGGCCTTGT ATGGCTATGATCCTGTACTAACTGAGGCTGATTTGGAACCTAACATTGTTGTTAAGAGCT GCTGTGGTGGCAGAAAGAAAAAGAGCAAGAGCTACATGGATAGCAAAAACCGTATGATGA AGAGAACAGAGTCTTCAGCTCCTATCTTTAACATGGAAGATATAGAAGAGGGCATTGAAG GTTATGAAGATGAAAGGTCAGTGCTGATGTCCCAGAAGAGATTAGAGAAACGTTTTGGTC AATCGCCAATTTTTATTGCGTCCACCTTCATGACTCAAGGAGGCATACCACCCTCAACGA ACCCAGCATCTCTACTGAAGGAAGCCATCCATGTTATCAGTTGTGGATATGAGGACAAAA CTGAATGGGGAAAAGAGATTGGCTGGATCTATGGTTCAGTTACTGAGGATATTCTGACTG GATTTAAAATGCACGCAAGAGGTTGGATATCAATCTATTGCATGCCACCACGGCCATGCT TCAAGGGTTCTGCGCCAATCAATCTGTCTGATCGTCTTAACCAAGTGCTACGTTGGGCTC TTGGGTCTGTTGAGATTCTGCTTAGCAGACATTGTCCTATCTGGTATGGTTACAATGGGC GTTTGAAACTTCTGGAGAGGCTGGCTTACATTAACACCATTGTTTATCCAATTACATCCA TTCCACTTATCGCCTATTGTGTGCTTCCTGCTATCTGTCTCCTCACCAACAAATTTATCA TTCCTGAGATTAGCAATTATGCTGGGATGTTCTTTATTCTGCTTTTCGCCTCCATTTTCG CAACTGGTATTCTGGAGCTCCGATGGAGTGGTGTTGGTATCGAGGACTGGTGGAGAAATG AACAGTTCTGGGTCATTGGTGGCACATCTGCCCATCTCTTCGCTGTGTTCCAGGGTCTTC TGAAAGTGTTAGCAGGAATTGATACCAACTTCACTGTTACCTCAAAGGCGTCCGATGAGG ATGGTGACTTTGCTGAGCTATACGTGTTCAAGTGGACCAGTCTCCTCATTCCCCCGACCA CCGTGCTTGTCATCAACCTGGTGGGCATGGTGGCGGGTATATCATATGCCATTAACAGCG GTTACCAATCATGGGGTCCTCTCTTTGGAAAGCTCTTCTTCTCCATCTGGGTGATCCTCC ATCTCTACCCCTTCCTCAAGGGTCTCATGGGCAGGCAGAACCGCACTCCGACCATCGTCA TCGTCTGGTCGATCCTCCTCGCGTCGATCTTCTCCCTTCTGTGGGTCAAGATCGATCCTT TCATTTCGCCTACTCAGAAAGCCGTCGCCTTGGGGCAATGCGGTGTGAACTGCTGATCGG CACCGTTACGAAGATGAACTTCAATCAATCAAGGTCTACCCCCCCTTGTGTAAATACCTG AGGGGGGCTAGAATGGGATCTTCTTTTTGTGTAGATGAAGACCTTTTTTATCTAAGTTAT GCCACTGTTTATTAGCTACTTCAGTGCTGGCGCTAGCTGCTGATACGATGGAACTGTGAA GCCTTATTTTGCCTGCGAAGAAGCCAGCCCAGCAGCGTAAATTGTGAATTTTTTTCTTCT TTTGTGACACCCGTTATTTTAGTCATTTGTTTGAGGGGTCGTTGTTACACATACTATGGG ATGTTATTTATACGGATATATTCCAATTACATTCTTTTGCGGTGAACATTTTAATTATAT TCGTAGCATATAATGTAAGGCAACTCAGTATTTCAGCTGTTCACTTGACAAGTTGCAACA CATATACATCTTGAGTTGTTTGTTCATGACATTTGCATTCTCTGTTTCTGGAGCTT