Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0173500-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:4401894:4407138:1 gene:Os05g0173500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0173500-01);Hypothetical conserved gene. (Os05t0173500-02);Hypothetical conserved gene. (Os05t0173500-03)
Sequence

ATGCCGAAGAAGCCGTCGCTGTCGCGGGTTGCTTCAGAGACGCGGCTGCTGTTTTCTAGC
TGGGAACCTGAATCCCCGTTGGATGCTACCAGCGGATCCGGAAAAGATGCACCCGCCGAT
CAACAGGAAGGCGACGGGAAGCGGGGCCGACAACGCTCGCCTGGTGACGAAGCGAGGCCT
AAGCGGCAGCGCAAGACGAAGAAGAAGAATAAGAAGCAGTTGGATTTATTGGAGCGGGAG
GACGATCCCCTAATCCAATTGAGGTCATTGAAGGATCGATTCAAGGGTCGATTGAAGGAG
GGCGTTGCTTCAGCCCGATTGAAGTGTTTAGACACACTATTGAATGAGTCGAGGGATTTA
TCGCAGGGGAATGAGTCCAAGGGGAATTTGTTGAAGAGCCTCATTCAAAAGGCAGAGTTG
GATTTGTGGCAGGTGAAGGAACTGGAAACCGATCCCACGTCCGGTGCTAGCCAATCCAAA
GAAGAAGCTTCTGCTGCAGCTTCTGATGGACAGGGAGACGATAAGGAAAGGGGTGACTTG
CAAGCAGTCGAGGCCTATGGTTCTCCTCCTGGTAAGGAGAAGGTTGACTTGCAAGCAGCT
AAGGACTCTTCTCCCACTGCTGGGAGGAAGGGAAAGGGCAAGCGTATTATAGGGTATGAA
GCACAACAGAAGGAAAGCAACATTCAAGATGTTAAAACATCAAGTCAACAAGAAACTAGA
AAGCCAAAGAGGAAGAAGCAGAAGAAGAGGCAGAGGCGCAAGATGGAGGAATCCACGGAA
AATCTATCATGCCGCAGTGGCAGCAGCCCATCCTCTTCTCATGATGCAACAAGCACATCG
ACAATAGAGGGGGAGCCAGAACAACCATCTTTTGGGGATCTTGCGAGCATTGCACAAGAC
CATGATGACAAGATTGCATCTGACGTTGTTGACATCAAACAAGAACAAGAATCAGCAGAA
GATATCCTAGCTCTCCTCGACATGATGGATAAGGATGCCATCCAAGAAAAATTCAATTAC
TATCTCAAGCAGCTGGGCTTTGAGTCAAATGAGTATGATTTTTGGTCTGAAACCTATGAG
CCAGAGCAACTCACTGCGTTGCACGAGCGGTTAGCCATCTACCGCATCGTAGGTTATGAG
CTATCAAAGGGTAGGAAGCTTGGCAAACAGGATATTGCAAAACTGAAAGAGCAGTACAAT
CCGTCCATTCTTCGTAAGGAAGGATACTTCCGGCACTATGAGGAGAGTCTTGAGTGGTAC
TTCGATCTTGAATGGTGCAAGTACTCTGGTTTTCAAGACTATCAGCGGCTAGTGCTTCAT
GATAATGTTGAGTTCTTAGAGTGGGAGCATTACCACTTAAATTATAATACCTATGAGGAT
GATCTAGCATATGTCAGGTATCGTGCACGCTTAGCAAATGAGACTAAGTGGATTGAAGAT
TATCTGGCCCGTGACATAACTCAGGCTGAGTGGCGTAGGGTTAAGGATATAGCTTCAGTT
CAAGCACTGAAGATTGCAAGAGTCTCTGGTGGTGTCAAGGCACAGGCAGCTTTGGCTGGT
TTCAGAGATCATATATGGAGCATTCAGTTTGATTTCAATCACTATAAGGATTTTGATGGT
GTTTACTTCAAGATTTGGAAGCGGGTTGCTAAGAGAAAGATGAATTTTAGAGAAGCTTTG
TTGGAAGTGTATAGAGAAGATATGTTTCCTGTGCGCAAGAATGGTATTAAGTACGAACTT
GATAATACTCAACTAAGATTCAAGTCGATGAAAGAAAAGTATGATGCCCACGTGGCTTGC
CTTGATGAGTCGGTGCCAGAAGATGAAGTTCGTCAGTTGATCAAAGAGGCCGTTATAAAA
ATGAAACCAAAACCACATACCTATTTGGACTACGCCAGGAAGAAGTTACAGATATCAATG
AATATCGATTTGATTACCAAAAGTACGTGTACTCTTCTCAATTATCAAACATGA

Peptide Sequence

PEP ID

Os05t0173500-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:4401894:4407138:1 gene:Os05g0173500 transcript:Os05t0173500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0173500-01);Hypothetical conserved gene. (Os05t0173500-02);Hypothetical conserved gene. (Os05t0173500-03)
Sequence

MPKKPSLSRVASETRLLFSSWEPESPLDATSGSGKDAPADQQEGDGKRGRQRSPGDEARP
KRQRKTKKKNKKQLDLLEREDDPLIQLRSLKDRFKGRLKEGVASARLKCLDTLLNESRDL
SQGNESKGNLLKSLIQKAELDLWQVKELETDPTSGASQSKEEASAAASDGQGDDKERGDL
QAVEAYGSPPGKEKVDLQAAKDSSPTAGRKGKGKRIIGYEAQQKESNIQDVKTSSQQETR
KPKRKKQKKRQRRKMEESTENLSCRSGSSPSSSHDATSTSTIEGEPEQPSFGDLASIAQD
HDDKIASDVVDIKQEQESAEDILALLDMMDKDAIQEKFNYYLKQLGFESNEYDFWSETYE
PEQLTALHERLAIYRIVGYELSKGRKLGKQDIAKLKEQYNPSILRKEGYFRHYEESLEWY
FDLEWCKYSGFQDYQRLVLHDNVEFLEWEHYHLNYNTYEDDLAYVRYRARLANETKWIED
YLARDITQAEWRRVKDIASVQALKIARVSGGVKAQAALAGFRDHIWSIQFDFNHYKDFDG
VYFKIWKRVAKRKMNFREALLEVYREDMFPVRKNGIKYELDNTQLRFKSMKEKYDAHVAC
LDESVPEDEVRQLIKEAVIKMKPKPHTYLDYARKKLQISMNIDLITKSTCTLLNYQT

Transcript Sequence

Transcript ID

Os05t0173500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:4401894:4407138:1 gene:Os05g0173500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0173500-01);Hypothetical conserved gene. (Os05t0173500-02);Hypothetical conserved gene. (Os05t0173500-03)
Sequence

GCATCCCGTCTACTGACCACACACGGCCGGACGGAAGACCCGAACCGTATCGCCTCCACA
ATCCATCCCCCAGAACCATACCACGCGTTCCCGTTCCCCTCCTAAATACTCGATCAATAT
CAATCAATCTCCGCCAACTCCCTCGAATCGCTCCTGAATAACTTAGTTTTCTCTTGTTAG
ATTAGGGTTTCGAGTCTTTCGACGTCCTGCTTGCTTGCAGGGAGATTCTGATGCCGAAGA
AGCCGTCGCTGTCGCGGGTTGCTTCAGAGACGCGGCTGCTGTTTTCTAGCTGGGAACCTG
AATCCCCGTTGGATGCTACCAGCGGATCCGGAAAAGATGCACCCGCCGATCAACAGGAAG
GCGACGGGAAGCGGGGCCGACAACGCTCGCCTGGTGACGAAGCGAGGCCTAAGCGGCAGC
GCAAGACGAAGAAGAAGAATAAGAAGCAGTTGGATTTATTGGAGCGGGAGGACGATCCCC
TAATCCAATTGAGGTCATTGAAGGATCGATTCAAGGGTCGATTGAAGGAGGGCGTTGCTT
CAGCCCGATTGAAGTGTTTAGACACACTATTGAATGAGTCGAGGGATTTATCGCAGGGGA
ATGAGTCCAAGGGGAATTTGTTGAAGAGCCTCATTCAAAAGGCAGAGTTGGATTTGTGGC
AGGTGAAGGAACTGGAAACCGATCCCACGTCCGGTGCTAGCCAATCCAAAGAAGAAGCTT
CTGCTGCAGCTTCTGATGGACAGGGAGACGATAAGGAAAGGGGTGACTTGCAAGCAGTCG
AGGCCTATGGTTCTCCTCCTGGTAAGGAGAAGGTTGACTTGCAAGCAGCTAAGGACTCTT
CTCCCACTGCTGGGAGGAAGGGAAAGGGCAAGCGTATTATAGGGTATGAAGCACAACAGA
AGGAAAGCAACATTCAAGATGTTAAAACATCAAGTCAACAAGAAACTAGAAAGCCAAAGA
GGAAGAAGCAGAAGAAGAGGCAGAGGCGCAAGATGGAGGAATCCACGGAAAATCTATCAT
GCCGCAGTGGCAGCAGCCCATCCTCTTCTCATGATGCAACAAGCACATCGACAATAGAGG
GGGAGCCAGAACAACCATCTTTTGGGGATCTTGCGAGCATTGCACAAGACCATGATGACA
AGATTGCATCTGACGTTGTTGACATCAAACAAGAACAAGAATCAGCAGAAGATATCCTAG
CTCTCCTCGACATGATGGATAAGGATGCCATCCAAGAAAAATTCAATTACTATCTCAAGC
AGCTGGGCTTTGAGTCAAATGAGTATGATTTTTGGTCTGAAACCTATGAGCCAGAGCAAC
TCACTGCGTTGCACGAGCGGTTAGCCATCTACCGCATCGTAGGTTATGAGCTATCAAAGG
GTAGGAAGCTTGGCAAACAGGATATTGCAAAACTGAAAGAGCAGTACAATCCGTCCATTC
TTCGTAAGGAAGGATACTTCCGGCACTATGAGGAGAGTCTTGAGTGGTACTTCGATCTTG
AATGGTGCAAGTACTCTGGTTTTCAAGACTATCAGCGGCTAGTGCTTCATGATAATGTTG
AGTTCTTAGAGTGGGAGCATTACCACTTAAATTATAATACCTATGAGGATGATCTAGCAT
ATGTCAGGTATCGTGCACGCTTAGCAAATGAGACTAAGTGGATTGAAGATTATCTGGCCC
GTGACATAACTCAGGCTGAGTGGCGTAGGGTTAAGGATATAGCTTCAGTTCAAGCACTGA
AGATTGCAAGAGTCTCTGGTGGTGTCAAGGCACAGGCAGCTTTGGCTGGTTTCAGAGATC
ATATATGGAGCATTCAGTTTGATTTCAATCACTATAAGGATTTTGATGGTGTTTACTTCA
AGATTTGGAAGCGGGTTGCTAAGAGAAAGATGAATTTTAGAGAAGCTTTGTTGGAAGTGT
ATAGAGAAGATATGTTTCCTGTGCGCAAGAATGGTATTAAGTACGAACTTGATAATACTC
AACTAAGATTCAAGTCGATGAAAGAAAAGTATGATGCCCACGTGGCTTGCCTTGATGAGT
CGGTGCCAGAAGATGAAGTTCGTCAGTTGATCAAAGAGGCCGTTATAAAAATGAAACCAA
AACCACATACCTATTTGGACTACGCCAGGAAGAAGTTACAGATATCAATGAATATCGATT
TGATTACCAAAAGTACGTGTACTCTTCTCAATTATCAAACATGATTCAATGCTAATCAAT
GCCGTTTGAAAGAATTTTAGCTTTCTTAGTCTGAGAAATATGTCTTTCGTTTGAATTCAA
TAACTAGTAATCTGTCCGTGC