Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0163000-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:3690011:3697450:1 gene:Os05g0163000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Arginyl-tRNA synthetase, class Ic family protein. (Os05t0163000-01)
Sequence

ATGGGGGACGAGACCTCCACCTCCGTCGCCACGCAGTCGCAGGAACCTGCAGCAGTGGGA
GCTGGGAGTGTGAAGCAACAGCTCTCCAAGTTGGTTATTGCATCACTCCGGACTACGGTT
CCCGAAGTGGAAGTCGATCCTATGGTTGAAGTCTGCACAGCAAAGTTTGGTGACTACCAG
TGCAACAATGCAATGGGATTATGGTCAAGAATTAAAGGATCTGGAACAAGTTTCAAGAAC
CCCAATGCAATTGGACAGGCCATTGCGAAGAACCTGCCTCCGTCTGATATTATTGAATCC
ACATCTGTCGCTGGACCTGGTTTTGTGAATATTGTCTTGTCCAACAGCTGGGTTGCAAAG
AGAATACAAGATATGCTTGTGAATGGTATCAAAACATGGGCACCAATCCTGCCAGTTAAG
AGGGCAGTGCTTGATTTCTCATCCCCTAACATTGCCAAGGAAATGCATGTTGGGCATTTA
AGATCAACAATCATTGGAGACACCCTTGCCCGCATGTTTGAATTTTCCAATGTTGAAGTT
CTCCGCCGTAATCATGTCGGGGACTGGGGCACACAGTTTGGAATGCTCATACAATATCTA
TTTGAAAAATTTCCAAATTGGGAGGAAATTGGTAGCCAGGCTATTGGTGACCTTCAGACT
TTCTATAAAGCGTCCAAGAACCGCTTTGATGGTGATGCAGAATTTAAAGACAGAGCTCAA
CAAGCAGTCGTTAGACTTCAGGGAGGGGAAGAGAGATACCGTGCTGCTTGGAACAAGATT
TGTGAAATCAGCAGGAATGAATTTGACATGGTTTACAAGCTCTTGAATGTAAAGCTTGAA
GAAAAGGGAGAGAGCTTTTATAATCCTTTTATTCCACAAGTCTTGGAAGAGTTGAATAAC
AAAGGTTTGATCAAAGAAAGCGAGGGTGCTAAAGTGATATTCATAGAAGGCCATCAAATC
CCTTTGATAGTGGTTAAAAGGGACGGTGGCTTTAACTATGCCTCAACAGACTTAGCTGCT
CTATGGTACCGTCTTAATGTTGAGAAGGCAGAATGGATAATATACGTAACAGATGTTGGA
CAGCAGCAGCACTTTGACATGTTCTTTAATGCTGCCAGAATGGCTGGCTGGCTTCCAGAT
CCAAAAGAAAAGAAATATCCAAAAACGAATCATGTTGGGTTTGGTCTTGTTCTTGGATCA
GATGGCAAGCGTTTCCGAACTCGTAGTACCGAAGTTGTTCGATTGATAGAGCTACTTGAT
GAGGCTAAATCTCGGAGTAAATCAGAACTTCTCCAGCGACTAACAGAAAATGGTAAAATT
GTTGATTGGACTGAGGAGGAACTGGAAAAGACTTCAGAAGCAGTAGGATATGGCGCTGTC
AAGTATGCAGATCTGAAGAACAATCGTCTTACCAATTACACATTTAGCTTTGAACAAATG
CTGAGTGATAAGGGAAATACAGCTGTTTACCTTCAGTATGCTCATGCTCGCATTTGCTCT
ATAATCAGGAAATCCAACAAGGATGTAGAAGAGCTGAAAATGAGTGGTGCCATTTCTCTT
GATCATCCAGATGAGCGTGTCTTGGGACTGTACCTGATCCGATTTGCAGAGGTTGTGGAA
GAGGCGTGCACCAACCTACTTCCGAATGTCCTGTGCGAGTACCTGTACAACCTTTCTGAA
ATGTTCACAAGATTTTACACCAACTGCCAGGTGGTTGGATCGCCCGAGGAGACAAGCCGA
CTGCTGCTCTGCCAAGCGACGGCGGTCGTGATGCGACAATGCTTTGAGCTGCTCGGAATT
ACACCAGTTTACAAGCTGTGA

Peptide Sequence

PEP ID

Os05t0163000-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:3690011:3697450:1 gene:Os05g0163000 transcript:Os05t0163000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Arginyl-tRNA synthetase, class Ic family protein. (Os05t0163000-01)
Sequence

MGDETSTSVATQSQEPAAVGAGSVKQQLSKLVIASLRTTVPEVEVDPMVEVCTAKFGDYQ
CNNAMGLWSRIKGSGTSFKNPNAIGQAIAKNLPPSDIIESTSVAGPGFVNIVLSNSWVAK
RIQDMLVNGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVEV
LRRNHVGDWGTQFGMLIQYLFEKFPNWEEIGSQAIGDLQTFYKASKNRFDGDAEFKDRAQ
QAVVRLQGGEERYRAAWNKICEISRNEFDMVYKLLNVKLEEKGESFYNPFIPQVLEELNN
KGLIKESEGAKVIFIEGHQIPLIVVKRDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVG
QQQHFDMFFNAARMAGWLPDPKEKKYPKTNHVGFGLVLGSDGKRFRTRSTEVVRLIELLD
EAKSRSKSELLQRLTENGKIVDWTEEELEKTSEAVGYGAVKYADLKNNRLTNYTFSFEQM
LSDKGNTAVYLQYAHARICSIIRKSNKDVEELKMSGAISLDHPDERVLGLYLIRFAEVVE
EACTNLLPNVLCEYLYNLSEMFTRFYTNCQVVGSPEETSRLLLCQATAVVMRQCFELLGI
TPVYKL

Transcript Sequence

Transcript ID

Os05t0163000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:3690011:3697450:1 gene:Os05g0163000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Arginyl-tRNA synthetase, class Ic family protein. (Os05t0163000-01)
Sequence

AGATGCGAGCTCTCGCGGCGGCGGCGGCAACGGCAACAGCGACTGCAGCGGCGGCGGCGG
CGCCTTCCCCCGCGCGCTTCCCTCTCCGCCTCGTCGTCACCCCGCGCGCCTCGGTCATTG
TAGAGCATCTTCCTCCGCAAGGTCTCCGAGGAGGGCCTGCTACGCGACCACCATGGGGGA
CGAGACCTCCACCTCCGTCGCCACGCAGTCGCAGGAACCTGCAGCAGTGGGAGCTGGGAG
TGTGAAGCAACAGCTCTCCAAGTTGGTTATTGCATCACTCCGGACTACGGTTCCCGAAGT
GGAAGTCGATCCTATGGTTGAAGTCTGCACAGCAAAGTTTGGTGACTACCAGTGCAACAA
TGCAATGGGATTATGGTCAAGAATTAAAGGATCTGGAACAAGTTTCAAGAACCCCAATGC
AATTGGACAGGCCATTGCGAAGAACCTGCCTCCGTCTGATATTATTGAATCCACATCTGT
CGCTGGACCTGGTTTTGTGAATATTGTCTTGTCCAACAGCTGGGTTGCAAAGAGAATACA
AGATATGCTTGTGAATGGTATCAAAACATGGGCACCAATCCTGCCAGTTAAGAGGGCAGT
GCTTGATTTCTCATCCCCTAACATTGCCAAGGAAATGCATGTTGGGCATTTAAGATCAAC
AATCATTGGAGACACCCTTGCCCGCATGTTTGAATTTTCCAATGTTGAAGTTCTCCGCCG
TAATCATGTCGGGGACTGGGGCACACAGTTTGGAATGCTCATACAATATCTATTTGAAAA
ATTTCCAAATTGGGAGGAAATTGGTAGCCAGGCTATTGGTGACCTTCAGACTTTCTATAA
AGCGTCCAAGAACCGCTTTGATGGTGATGCAGAATTTAAAGACAGAGCTCAACAAGCAGT
CGTTAGACTTCAGGGAGGGGAAGAGAGATACCGTGCTGCTTGGAACAAGATTTGTGAAAT
CAGCAGGAATGAATTTGACATGGTTTACAAGCTCTTGAATGTAAAGCTTGAAGAAAAGGG
AGAGAGCTTTTATAATCCTTTTATTCCACAAGTCTTGGAAGAGTTGAATAACAAAGGTTT
GATCAAAGAAAGCGAGGGTGCTAAAGTGATATTCATAGAAGGCCATCAAATCCCTTTGAT
AGTGGTTAAAAGGGACGGTGGCTTTAACTATGCCTCAACAGACTTAGCTGCTCTATGGTA
CCGTCTTAATGTTGAGAAGGCAGAATGGATAATATACGTAACAGATGTTGGACAGCAGCA
GCACTTTGACATGTTCTTTAATGCTGCCAGAATGGCTGGCTGGCTTCCAGATCCAAAAGA
AAAGAAATATCCAAAAACGAATCATGTTGGGTTTGGTCTTGTTCTTGGATCAGATGGCAA
GCGTTTCCGAACTCGTAGTACCGAAGTTGTTCGATTGATAGAGCTACTTGATGAGGCTAA
ATCTCGGAGTAAATCAGAACTTCTCCAGCGACTAACAGAAAATGGTAAAATTGTTGATTG
GACTGAGGAGGAACTGGAAAAGACTTCAGAAGCAGTAGGATATGGCGCTGTCAAGTATGC
AGATCTGAAGAACAATCGTCTTACCAATTACACATTTAGCTTTGAACAAATGCTGAGTGA
TAAGGGAAATACAGCTGTTTACCTTCAGTATGCTCATGCTCGCATTTGCTCTATAATCAG
GAAATCCAACAAGGATGTAGAAGAGCTGAAAATGAGTGGTGCCATTTCTCTTGATCATCC
AGATGAGCGTGTCTTGGGACTGTACCTGATCCGATTTGCAGAGGTTGTGGAAGAGGCGTG
CACCAACCTACTTCCGAATGTCCTGTGCGAGTACCTGTACAACCTTTCTGAAATGTTCAC
AAGATTTTACACCAACTGCCAGGTGGTTGGATCGCCCGAGGAGACAAGCCGACTGCTGCT
CTGCCAAGCGACGGCGGTCGTGATGCGACAATGCTTTGAGCTGCTCGGAATTACACCAGT
TTACAAGCTGTGATTGACATTTCGATATCCATTTTTCATACAAACTTTCTTTCATGGTTG
CAGTTTTTGTTATGTAACCTAGATGATGCTTCTAACATATTCTAGTCTTGGTTGCTGTAT
TCGAAGACACCAAAGAAAGATTTTATTTGATCTC