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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0157200-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:3345130:3347246:-1 gene:Os05g0157200 gene_biotype:protein_coding transcript_biotype:protein_coding description:UspA domain containing protein. (Os05t0157200-01)
Sequence

ATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGGCGGCGGTGGACTTCTCGGAG
GGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTC
ATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAG
GCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAA
TATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAG
GAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCC
ATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAG
AGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACA
GTTGTCAAGACAGCCGATGGTTGA

Peptide Sequence

PEP ID

Os05t0157200-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:3345130:3347246:-1 gene:Os05g0157200 transcript:Os05t0157200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:UspA domain containing protein. (Os05t0157200-01)
Sequence

MAGEAAAAERWVGAAVDFSEGSRAALRWAADNLLRAGDHLILLHVLKDPDYEQGETLLWE
ATGSPLIPLSDFSEPTIAKKYGAKPDAETLDMLNTVARQKEVVVVFKVLWGDPREKLCQA
INEIPMSCLVIGSRGLGKLKRVLLGSVSDYVVNNATCPVTVVKTADG

Transcript Sequence

Transcript ID

Os05t0157200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:3345130:3347246:-1 gene:Os05g0157200 gene_biotype:protein_coding transcript_biotype:protein_coding description:UspA domain containing protein. (Os05t0157200-01)
Sequence

AGTGACCTCCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCA
GCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGG
GTGGGGGCGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGAC
AACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTAC
GAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGAT
TTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGAC
ATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGA
GATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATT
GGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTC
GTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGT
CATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATAT
TGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGT
ACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAGC