Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0156900-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:3335380:3339817:-1 gene:Os05g0156900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Chalk5 description:Vacuolar H+-translocating pyrophosphatase, Regulation of grain chalkiness (Os05t0156900-01)
Sequence	ATGGCGCTCATCGGCACGGTGGCGGCCGAGGTGCTCATCCCGCTCGCGGCGGTGATCGGC ATCCTCTTCGCCGTGCTCCAGTGGTACATGGTGTCCAGGGTGGCCGTCCCGCCGCACGAC GGCGTCGGCGGCGCCGGGAAGGTGGAGAGGGAGAGCGACGGCGGCGACGGCGACGGCGAC GGCGTCGACGACGAGGAGGACGGCGTGGACTACCGGGGCGTGGAGGCGAGGTGCGCGGAG ATCCAGCACGCCATCTCCGTGGGCGCGACGTCGTTCCTGATGACGGAGTACAAGTACCTG GGCGCGTTCATGGCGGCGTTCGCGGCGGTCATCTTCGTCTCGCTGGGCTCCGTGGGGCGG TTCTCCACGTCGACGGAGCCGTGCCCGTACGACGCGGCGAGGCGGTGCCGCCCGGCGCTG GCGAACGCGGCGTTCACCGCGGCGGCGTTCCTCCTCGGCGCCACCACCTCGGTGGTCTCC GGCTACCTCGGGATGCGGGTGGCGACGTTCGCGAACGCGAGGACGGCGCTGGAGGCTCGC CGCGGGATCGGGCGGGCGTTCGCGGTGGCGTTCAGGTCGGGCGCCGCCATGGGGTTCCTG CTGGCGTCGAGCGCGCTGCTGGTGCTGTTCGCCGCCGTGAACGCGTTCGGGCTCTACTAC GGCGACGACTGGGGCGGGCTGTACGAGGCGATCACCGGGTACGGGCTCGGGGGGTCGTCC ATGGCGCTGTTCGGCCGCGTCGGCGGCGGGATCTACACCAAGGCGGCCGACGTCGGCGCC GACCTCGTCGGCAAGGTGGAGCGCAACATCCCCGAGGATGACCCCCGCAACCCCGCGGTG ATCGCCGACAACGTGGGCGACAACGTGGGCGACATCGCCGGGATGGGGTCCGACCTGTTC GGGTCGTACGCGGAGTCGTCGTGCGCGGCGCTGTTCGTGGCGTCCATCTCCTCCTTCGGC GCCGACCACGACTTCGCGGCGATGATGTACCCGCTGCTGGTGAGCGCCGCCGGCATCGTG GCCTGCGCCGCCACCACGCTCGTCGCCACCGACGCCGGCGAGCTCGGCGCCGCCGACGAG GTCGCGCCCGCGCTCAAGCGCCAGATCCTCATCTCCACCGTGCTCATGACCGCCGCCGTC GCCGCCGTCACCTTCCTCTCCCTCCCCCGCTCCTTCACCCTCTTCGACTTCGGCGAACGC AAGCTCGTCAAAAATTGGCACCTGTTCATCTGCGTCTCAGCTGGTCTGTGGGCGGGATTG GTGATAGGCTACGTCACCGAGTACTTCACGAGCAATGCTTACGGGCCGGTGCAGACGGTG GCGCAGTCGTGCCGGACGGGGGCGGCGACGAACGTGATCTTCGGCCTCGCCGTGGGGTAC AAGTCGGTGATCGTGCCGATCTTCGCCATCGCCGGCGCCATCTACGCCAGCTTCCGGCTC GCCGCCATGTACGGCATCGCGCTGGCTGCGCTGGGGATGCTGAGCACCATCGCCACGGGG CTCACCATCGACGCCTATGGCCCCATCAGCGACAACGCCGGCGGCATCGCGGAGATGGCC GGCATGCCGCGGCGCGTGCGCGAGCGCACGGACGCGCTCGACGCCGCCGGGAACACGACG GCGGCGATCGGGAAGGGGTTCGCGATCGGGTCGGCGGCGCTGGTGTCGCTGGCGCTGTTC GGCGCGTACGTGAGCCGGGCGGGGATCCGGACGGTGAACGTGGTGAGCCCCAGGGTGTTC GTCGGGCTCCTCGCCGGCGCCATGCTCCCCTACTGGTTCTCGGCGATGACGATGCGGAGC GTGGGGAGCGCGGCGCTGCGGATGGTGGAGGAGGTGCGGCGCCAGTTCGACGAGATCCCG GGGCTCGCCGAGGGGCTCGCCGCGCCGGACTACGCCACCTGCGTGAGGATCTCCACCGAC GCGTCGCTGCGGGAGATGGTGGCGCCGGGGGCGCTGGTGATGGCGAGCCCGCTCGTCGCC GGGACGCTGTTCGGGGTGGAGGCGCTGGCGGGGCTGCTCGCCGGCGCGCTGGTGTCCGGG GTGCAGGTGGCGATCTCGGCGTCGAACAGCGGCGGCGCGTGGGACAACGCCAAGAAGTAC ATCGAGGCCGGGGCGACGGAGGAGGCGAGGTCGCTGGGGCCCAAGGGCTCCGAGGCGCAC AAGGCGGCGGTGATCGGGGACACCATCGGCGACCCGCTCAAGGACACCTCGGGGCCATCG CTCAACATCCTCGTCAAGCTCATGGCCGTCGAGGCGCTCGTCTTCGCCCCCTTCTTCGCC GCGCATGGCGGCATCGTCTTCAACCACCTCTGA

Peptide Sequence

PEP ID	Os05t0156900-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:3335380:3339817:-1 gene:Os05g0156900 transcript:Os05t0156900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Chalk5 description:Vacuolar H+-translocating pyrophosphatase, Regulation of grain chalkiness (Os05t0156900-01)
Sequence	MALIGTVAAEVLIPLAAVIGILFAVLQWYMVSRVAVPPHDGVGGAGKVERESDGGDGDGD GVDDEEDGVDYRGVEARCAEIQHAISVGATSFLMTEYKYLGAFMAAFAAVIFVSLGSVGR FSTSTEPCPYDAARRCRPALANAAFTAAAFLLGATTSVVSGYLGMRVATFANARTALEAR RGIGRAFAVAFRSGAAMGFLLASSALLVLFAAVNAFGLYYGDDWGGLYEAITGYGLGGSS MALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLF GSYAESSCAALFVASISSFGADHDFAAMMYPLLVSAAGIVACAATTLVATDAGELGAADE VAPALKRQILISTVLMTAAVAAVTFLSLPRSFTLFDFGERKLVKNWHLFICVSAGLWAGL VIGYVTEYFTSNAYGPVQTVAQSCRTGAATNVIFGLAVGYKSVIVPIFAIAGAIYASFRL AAMYGIALAALGMLSTIATGLTIDAYGPISDNAGGIAEMAGMPRRVRERTDALDAAGNTT AAIGKGFAIGSAALVSLALFGAYVSRAGIRTVNVVSPRVFVGLLAGAMLPYWFSAMTMRS VGSAALRMVEEVRRQFDEIPGLAEGLAAPDYATCVRISTDASLREMVAPGALVMASPLVA GTLFGVEALAGLLAGALVSGVQVAISASNSGGAWDNAKKYIEAGATEEARSLGPKGSEAH KAAVIGDTIGDPLKDTSGPSLNILVKLMAVEALVFAPFFAAHGGIVFNHL

Transcript Sequence

Transcript ID	Os05t0156900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:3335380:3339817:-1 gene:Os05g0156900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Chalk5 description:Vacuolar H+-translocating pyrophosphatase, Regulation of grain chalkiness (Os05t0156900-01)
Sequence	ACTCCACATCTCTTCTCCATCAAGAATCAATCACTCGCTCGTCTTCTCCTCCATTGGAGC TCTCGATCGAGCTTAGCTTTGCGCTTCGTTCATCCATGGCGCTCATCGGCACGGTGGCGG CCGAGGTGCTCATCCCGCTCGCGGCGGTGATCGGCATCCTCTTCGCCGTGCTCCAGTGGT ACATGGTGTCCAGGGTGGCCGTCCCGCCGCACGACGGCGTCGGCGGCGCCGGGAAGGTGG AGAGGGAGAGCGACGGCGGCGACGGCGACGGCGACGGCGTCGACGACGAGGAGGACGGCG TGGACTACCGGGGCGTGGAGGCGAGGTGCGCGGAGATCCAGCACGCCATCTCCGTGGGCG CGACGTCGTTCCTGATGACGGAGTACAAGTACCTGGGCGCGTTCATGGCGGCGTTCGCGG CGGTCATCTTCGTCTCGCTGGGCTCCGTGGGGCGGTTCTCCACGTCGACGGAGCCGTGCC CGTACGACGCGGCGAGGCGGTGCCGCCCGGCGCTGGCGAACGCGGCGTTCACCGCGGCGG CGTTCCTCCTCGGCGCCACCACCTCGGTGGTCTCCGGCTACCTCGGGATGCGGGTGGCGA CGTTCGCGAACGCGAGGACGGCGCTGGAGGCTCGCCGCGGGATCGGGCGGGCGTTCGCGG TGGCGTTCAGGTCGGGCGCCGCCATGGGGTTCCTGCTGGCGTCGAGCGCGCTGCTGGTGC TGTTCGCCGCCGTGAACGCGTTCGGGCTCTACTACGGCGACGACTGGGGCGGGCTGTACG AGGCGATCACCGGGTACGGGCTCGGGGGGTCGTCCATGGCGCTGTTCGGCCGCGTCGGCG GCGGGATCTACACCAAGGCGGCCGACGTCGGCGCCGACCTCGTCGGCAAGGTGGAGCGCA ACATCCCCGAGGATGACCCCCGCAACCCCGCGGTGATCGCCGACAACGTGGGCGACAACG TGGGCGACATCGCCGGGATGGGGTCCGACCTGTTCGGGTCGTACGCGGAGTCGTCGTGCG CGGCGCTGTTCGTGGCGTCCATCTCCTCCTTCGGCGCCGACCACGACTTCGCGGCGATGA TGTACCCGCTGCTGGTGAGCGCCGCCGGCATCGTGGCCTGCGCCGCCACCACGCTCGTCG CCACCGACGCCGGCGAGCTCGGCGCCGCCGACGAGGTCGCGCCCGCGCTCAAGCGCCAGA TCCTCATCTCCACCGTGCTCATGACCGCCGCCGTCGCCGCCGTCACCTTCCTCTCCCTCC CCCGCTCCTTCACCCTCTTCGACTTCGGCGAACGCAAGCTCGTCAAAAATTGGCACCTGT TCATCTGCGTCTCAGCTGGTCTGTGGGCGGGATTGGTGATAGGCTACGTCACCGAGTACT TCACGAGCAATGCTTACGGGCCGGTGCAGACGGTGGCGCAGTCGTGCCGGACGGGGGCGG CGACGAACGTGATCTTCGGCCTCGCCGTGGGGTACAAGTCGGTGATCGTGCCGATCTTCG CCATCGCCGGCGCCATCTACGCCAGCTTCCGGCTCGCCGCCATGTACGGCATCGCGCTGG CTGCGCTGGGGATGCTGAGCACCATCGCCACGGGGCTCACCATCGACGCCTATGGCCCCA TCAGCGACAACGCCGGCGGCATCGCGGAGATGGCCGGCATGCCGCGGCGCGTGCGCGAGC GCACGGACGCGCTCGACGCCGCCGGGAACACGACGGCGGCGATCGGGAAGGGGTTCGCGA TCGGGTCGGCGGCGCTGGTGTCGCTGGCGCTGTTCGGCGCGTACGTGAGCCGGGCGGGGA TCCGGACGGTGAACGTGGTGAGCCCCAGGGTGTTCGTCGGGCTCCTCGCCGGCGCCATGC TCCCCTACTGGTTCTCGGCGATGACGATGCGGAGCGTGGGGAGCGCGGCGCTGCGGATGG TGGAGGAGGTGCGGCGCCAGTTCGACGAGATCCCGGGGCTCGCCGAGGGGCTCGCCGCGC CGGACTACGCCACCTGCGTGAGGATCTCCACCGACGCGTCGCTGCGGGAGATGGTGGCGC CGGGGGCGCTGGTGATGGCGAGCCCGCTCGTCGCCGGGACGCTGTTCGGGGTGGAGGCGC TGGCGGGGCTGCTCGCCGGCGCGCTGGTGTCCGGGGTGCAGGTGGCGATCTCGGCGTCGA ACAGCGGCGGCGCGTGGGACAACGCCAAGAAGTACATCGAGGCCGGGGCGACGGAGGAGG CGAGGTCGCTGGGGCCCAAGGGCTCCGAGGCGCACAAGGCGGCGGTGATCGGGGACACCA TCGGCGACCCGCTCAAGGACACCTCGGGGCCATCGCTCAACATCCTCGTCAAGCTCATGG CCGTCGAGGCGCTCGTCTTCGCCCCCTTCTTCGCCGCGCATGGCGGCATCGTCTTCAACC ACCTCTGATGAAGCTGAGCTCCATTGCTAATAAATTAAGCTGCATGCATGCTCTCGCCAT GATCGATCAGCTGCACCTGCATGCACGCATGGATAAACAAGAAGAAGACGATGAGCATTA GGGTTCCTTAACCAGTTGAAACCGATAAGAGTAATAATTGTAGCTCGGGATAATGCAGTG TCAGATGTAATCCAAAGTGTCTTGTTGCTTGGGATATGTAATGCGGTTTGAGACTTAGGA TGTAATCCAATGTTGTTTTAG