Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0149000-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:2804318:2804985:1 gene:Os05g0149000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA139 description:Pectinesterase inhibitor domain containing protein. (Os05t0149000-01)
Sequence

ATGAAGGCTTCCTCGTTGGCCGCCGTCGCCGCCGCGGTGCTCGTCGCCGCGGCGTGCTCC
GGGCGCGCGCCGGTGGCGGAGGCGACGATCGAGAGCACGTGCGGGGCGGCGGCGAAGGGC
GACCGGCGCGTGGACGTCGGCTTCTGCGCGCGGCAGTTCGCGTCGTACCACGGCGCGGCG
GAGGCGGACGCGTGGGGGCTCGCCAAGATCGCGGCGCTCATCGGCGTCAACCTCGCCGAC
GACGCCGTGTTCGACATCGGCGCCGGCAAGATCCGCCCCTCCCCCGGCGGCGGCGCCAAG
GGGGACAAGGCCATGGACGCGTGCGCCAAGGCGTACGACGCCGTCGGGGTCGCCTTCGCG
GAGGCTGCCGACGAGCTGGGCTCGCGCCGGTACGCCGCGGCGAGGCAGGAGCTGGCGCGC
GTGGCGGCGCTCGTGCAGCGGTGCGACGGCGGCCTCTCCCGGGCCGGCGCCAGGTCGCCG
CTGCCCAGGTACAGCGCCGACTGCCAGCAGGTGGCCATCATGGGCATCGCCATTACTAAC
CTCCTCAAGTGA

Peptide Sequence

PEP ID

Os05t0149000-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:2804318:2804985:1 gene:Os05g0149000 transcript:Os05t0149000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA139 description:Pectinesterase inhibitor domain containing protein. (Os05t0149000-01)
Sequence

MKASSLAAVAAAVLVAAACSGRAPVAEATIESTCGAAAKGDRRVDVGFCARQFASYHGAA
EADAWGLAKIAALIGVNLADDAVFDIGAGKIRPSPGGGAKGDKAMDACAKAYDAVGVAFA
EAADELGSRRYAAARQELARVAALVQRCDGGLSRAGARSPLPRYSADCQQVAIMGIAITN
LLK

Transcript Sequence

Transcript ID

Os05t0149000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:2804318:2804985:1 gene:Os05g0149000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA139 description:Pectinesterase inhibitor domain containing protein. (Os05t0149000-01)
Sequence

AAATCAAGCGAAACAAAAGCAATAAAGATGAAGGCTTCCTCGTTGGCCGCCGTCGCCGCC
GCGGTGCTCGTCGCCGCGGCGTGCTCCGGGCGCGCGCCGGTGGCGGAGGCGACGATCGAG
AGCACGTGCGGGGCGGCGGCGAAGGGCGACCGGCGCGTGGACGTCGGCTTCTGCGCGCGG
CAGTTCGCGTCGTACCACGGCGCGGCGGAGGCGGACGCGTGGGGGCTCGCCAAGATCGCG
GCGCTCATCGGCGTCAACCTCGCCGACGACGCCGTGTTCGACATCGGCGCCGGCAAGATC
CGCCCCTCCCCCGGCGGCGGCGCCAAGGGGGACAAGGCCATGGACGCGTGCGCCAAGGCG
TACGACGCCGTCGGGGTCGCCTTCGCGGAGGCTGCCGACGAGCTGGGCTCGCGCCGGTAC
GCCGCGGCGAGGCAGGAGCTGGCGCGCGTGGCGGCGCTCGTGCAGCGGTGCGACGGCGGC
CTCTCCCGGGCCGGCGCCAGGTCGCCGCTGCCCAGGTACAGCGCCGACTGCCAGCAGGTG
GCCATCATGGGCATCGCCATTACTAACCTCCTCAAGTGACACGTCGCCGCGTCGAACACC
TTTGGTGGTGTGGCTTGGTTCTTGGCTGCTTACCTACAAAGTGAATAAATTTTGTATCTG
TAGTTTAT