Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0147300-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:2716976:2718263:-1 gene:Os05g0147300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to calcium ion binding protein. (Os05t0147300-00)
Sequence

ATGTCCATTTCAGTTGCCAAATTCGCTCTGATCTTGCAGAATTTCATAGCAGAGATGGGA
TGTGTAGAATCCAAGCTGGTTGCTACTATCAAGTACAGGAGAGTGGAGAAGGATCTTGAC
AAGAAGGTGGCTGAGGCGCTCAAGGAGAGGACCAAGTCGAAGAAGAAGACCTTCAGGTCA
GTGAACAGCATCACCATGGGTCTCCCTCGCTTCAAGGAGGGCCTCAGGAACATCAGGGAT
GTCTTCGACCAATATGATGAGGACTCAAATGGGACAATTGACAATGAGGAGCTGAGGAAC
TGCCTGAACAAGCTTCAGGTCCAGATGTCAGAGGAGGAGATCGACAATATTCATCGCTAC
TGCGACATCGACAACAGGAAGGGGATCCAGTTCCCGGAGTTCGTCGTCTTCCTCTGCCTC
ATGTACCTTCTTTTTGGTTCAGATGTCACATACCGTGTTTCAGAGTTTGAATCCGCCAGG
CTCAACTATGTTTTCGATGAGCTCATCGACGCCTTCCTGTTCTTCGACAAGGATGGAAAT
GGCAAGATGAAGAGGAAAGATGTAACCCAGAGGATGAATGAGGCTACTCATCAGGAGAGG
ACCCCCAGCCACATAACGTCACAGCTATTCAAAGAGATGGACCTGAACAGGAATGGCCAT
GTGAACCTGAAGGAGTTTCTCTTATCAATTATCAGATGGGCAGGAGTTGAGACTGATGAT
GATGAAGCAAGAAATGAGACTTCTCCATAG

Peptide Sequence

PEP ID

Os05t0147300-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:2716976:2718263:-1 gene:Os05g0147300 transcript:Os05t0147300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to calcium ion binding protein. (Os05t0147300-00)
Sequence

MSISVAKFALILQNFIAEMGCVESKLVATIKYRRVEKDLDKKVAEALKERTKSKKKTFRS
VNSITMGLPRFKEGLRNIRDVFDQYDEDSNGTIDNEELRNCLNKLQVQMSEEEIDNIHRY
CDIDNRKGIQFPEFVVFLCLMYLLFGSDVTYRVSEFESARLNYVFDELIDAFLFFDKDGN
GKMKRKDVTQRMNEATHQERTPSHITSQLFKEMDLNRNGHVNLKEFLLSIIRWAGVETDD
DEARNETSP

Transcript Sequence

Transcript ID

Os05t0147300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:2716976:2718263:-1 gene:Os05g0147300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to calcium ion binding protein. (Os05t0147300-00)
Sequence

ATGTCCATTTCAGTTGCCAAATTCGCTCTGATCTTGCAGAATTTCATAGCAGAGATGGGA
TGTGTAGAATCCAAGCTGGTTGCTACTATCAAGTACAGGAGAGTGGAGAAGGATCTTGAC
AAGAAGGTGGCTGAGGCGCTCAAGGAGAGGACCAAGTCGAAGAAGAAGACCTTCAGGTCA
GTGAACAGCATCACCATGGGTCTCCCTCGCTTCAAGGAGGGCCTCAGGAACATCAGGGAT
GTCTTCGACCAATATGATGAGGACTCAAATGGGACAATTGACAATGAGGAGCTGAGGAAC
TGCCTGAACAAGCTTCAGGTCCAGATGTCAGAGGAGGAGATCGACAATATTCATCGCTAC
TGCGACATCGACAACAGGAAGGGGATCCAGTTCCCGGAGTTCGTCGTCTTCCTCTGCCTC
ATGTACCTTCTTTTTGGTTCAGATGTCACATACCGTGTTTCAGAGTTTGAATCCGCCAGG
CTCAACTATGTTTTCGATGAGCTCATCGACGCCTTCCTGTTCTTCGACAAGGATGGAAAT
GGCAAGATGAAGAGGAAAGATGTAACCCAGAGGATGAATGAGGCTACTCATCAGGAGAGG
ACCCCCAGCCACATAACGTCACAGCTATTCAAAGAGATGGACCTGAACAGGAATGGCCAT
GTGAACCTGAAGGAGTTTCTCTTATCAATTATCAGATGGGCAGGAGTTGAGACTGATGAT
GATGAAGCAAGAAATGAGACTTCTCCATAGTCTTCTTTTATTTTC