Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0144800-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:2584804:2590118:-1 gene:Os05g0144800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Xeroderma pigmentosum (XP) complementation group of protein D, XERODERMA PIGMENTOSUM D description:Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). (Os05t0144800-01)
Sequence	ATGAAGTTCGACCTGGAGGGCCTGACGGTGCACTTCCCGTACGCGGCGATCTACCCGGAG CAGCACGCGTACATGGGCGAGCTGAAGCGCGCCCTCGACGCGCGCGGCCACGCGCTGCTC GAGATGCCGACGGGCACCGGCAAGACGTCGGCGCTCATCTCCCTCATCACCTCCTACTCC CTCGCCAGCCCGTCCCGCCCGCTCCGCCTCATCTACTGCACCCGCACCGTCCACGAGATG GAGAAGACCCTCGCCGAGCTCCGCCTCCTCTTCGCCCACCTCCCCGCCGCCGCCTCCCGC TCCCTCCTCGCCCTCGGCCTCTCCTCCCGCAAGAACCTCTGCGTCCACCCCCAGGCCTCC GCCGCCGCCGCCCGCGACTCCGTCGACACCGCCTGCCGCCGCCTCACCGCGTCCTGGGTG CGCGACAGGGCCGCCTCCGACCCGGACTCCACCCCGCTCTGCGACTTCTTCGAGTCCTTC GACCGCGCCGCCGCCGCCGGTGACCTCGCCTCCTACATGCCCCCCGGCGTCTACACCCTC GCCGACCTCCGCGCCCTCGGCCGCGACCGCGGGATCTGCCCCTACTTCCTCGCGAGGCAG ATGGTCAAGTACGCCAATGTCGTGGTCTACAGCTACCAGTACCTGATTGATCCCAAGGTG GCCAGCATTGTGTCCAGGGAGATGCAGAAGGAGTGCGTCGTCGTCTTCGACGAGGCGCAC AACATCGATAATGTCTGCATTGAGGCTCTCAGTGTCAGCATCCGCAAGCAGACGCTCGAA GGTGCCGAGCGAAACTTGCGGCGCATCTCGCAAGAGATCGATAGGTTCAAGGCCACTGAT GCCAATAGGCTTCGTGCTGAATACAACAGGCTGGTTGATGGATTGGCACAGAGGGGAAAC CTGCCAATATCGGATGCTTGGCTCGCGAACCCGGCCTTGCCTGAGGACATTCTGAAGGAG GCTGTACCAGGAAACATCAGGAGGGCTGAGCATTTTCTTGCTGTTTTGCGGAGGCTTGTC AGGTTCCTAGATGGACGCCTGGAAACAGAGAATGTTGAGAATGAAATGCCTGTTGCCTTT GTTGCTTCAATCCATTCCCAGGCTGGAATTGACCAGAAAATGTTAAGGTTTTGTTATGAT CGGCTACACTCTCTAATGCTTACCTTGGAGATAACCGATACAGATGAGTTCATGCACATC CAGACAATTTGTGACTTTGCCACATTGATTGGAACTTATACACGGGGCTTTTCTATAATA ATAGAACCCTATGATGAGAGAATGCCTGATATCCGTGATCCTGTGATTCAGCTCAGTTGC CATGATGCATCGCTTGCAATACAGCCTGTTTTTGAGCGTTTTCAAACAGTAGTCATAACT TCTGGTACTCTCAGCCCAATAGACCTCTACCCTCGCCTTTTGAACTTTAATCCTGTTATA AGCAGGAGCTTCACAATGTCTTTAACAAGGGATTGCATATGTCCCATGGTCTTGACAAGA GGAAGTGACCAGCTACCTGTCAGTACAAAGTTTGATATGCGTAGCGATCCTGGCGTTGTA AGGAATTATGGTCGGCTCTTGCTGGAGATGGCTTCTGCTGTGCCAGATGGCATAGTTTGT TTTTTTGTCAGTTACTCTTATATGGATGGCATTGTCAACAGCTGGAATGAGATGGGTATT TTGCAGGACATCATGCAGCATAAGTTGGTATTCATTGAAACACCAGATGTTGTTGAGACA ACATTGGCTCTTGATAATTACAGAAAGGCATGTGATTGTGGAAGAGGTGCTATATTCTTT TCCGTTGCCAGGGGCAAAGTAGCCGAAGGTATTGATTTTGATCGACACTATGGCAGACTT GTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAGGATATTACTTGCTAGGTTG GAGTACCTAAGAGAAACTTTTCAAATAAAGGAGGGTGACTTCCTGACCTTCGATGCTTTG AGGCAAGCTGCGCAATGTGTTGGCCGTGTGATCCGTTCTAAAGCAGATTATGGAATGATG ATATTTGCTGACAAGAGATACAGTCGCCATGATAAACGGTCTAAACTGCCTGGGTGGATA CTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGATATGGCTTTGCATATAGCT CGTGAGTTCCTACGGAGGATGGCGCAGCCTTACGATAAGACGGGGAGCGGCGGCAACAAG ACTCTCTTAACCGAAGAGGATTTGCAGAATATGGCGCAGGACGCCATGGAGATGTGA

Peptide Sequence

PEP ID	Os05t0144800-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:2584804:2590118:-1 gene:Os05g0144800 transcript:Os05t0144800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Xeroderma pigmentosum (XP) complementation group of protein D, XERODERMA PIGMENTOSUM D description:Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). (Os05t0144800-01)
Sequence	MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTSALISLITSYS LASPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASRSLLALGLSSRKNLCVHPQAS AAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTL ADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVFDEAH NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN LPISDAWLANPALPEDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAF VASIHSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII IEPYDERMPDIRDPVIQLSCHDASLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVI SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC FFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFF SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA REFLRRMAQPYDKTGSGGNKTLLTEEDLQNMAQDAMEM

Transcript Sequence

Transcript ID	Os05t0144800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:2584804:2590118:-1 gene:Os05g0144800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Xeroderma pigmentosum (XP) complementation group of protein D, XERODERMA PIGMENTOSUM D description:Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). (Os05t0144800-01)
Sequence	ACGGGCACGGCATTGTAACGAACACCTCACGCGCACACCCTCCCCTCCCCACGGCGGCGG CGGCGGCGGCGCGTGCAGCCGGCGATTCCGCCTCTCCTCCAAACTCCGGCGGCCCACCGG CCCCGACCTCGCCGCCGCGATGAAGTTCGACCTGGAGGGCCTGACGGTGCACTTCCCGTA CGCGGCGATCTACCCGGAGCAGCACGCGTACATGGGCGAGCTGAAGCGCGCCCTCGACGC GCGCGGCCACGCGCTGCTCGAGATGCCGACGGGCACCGGCAAGACGTCGGCGCTCATCTC CCTCATCACCTCCTACTCCCTCGCCAGCCCGTCCCGCCCGCTCCGCCTCATCTACTGCAC CCGCACCGTCCACGAGATGGAGAAGACCCTCGCCGAGCTCCGCCTCCTCTTCGCCCACCT CCCCGCCGCCGCCTCCCGCTCCCTCCTCGCCCTCGGCCTCTCCTCCCGCAAGAACCTCTG CGTCCACCCCCAGGCCTCCGCCGCCGCCGCCCGCGACTCCGTCGACACCGCCTGCCGCCG CCTCACCGCGTCCTGGGTGCGCGACAGGGCCGCCTCCGACCCGGACTCCACCCCGCTCTG CGACTTCTTCGAGTCCTTCGACCGCGCCGCCGCCGCCGGTGACCTCGCCTCCTACATGCC CCCCGGCGTCTACACCCTCGCCGACCTCCGCGCCCTCGGCCGCGACCGCGGGATCTGCCC CTACTTCCTCGCGAGGCAGATGGTCAAGTACGCCAATGTCGTGGTCTACAGCTACCAGTA CCTGATTGATCCCAAGGTGGCCAGCATTGTGTCCAGGGAGATGCAGAAGGAGTGCGTCGT CGTCTTCGACGAGGCGCACAACATCGATAATGTCTGCATTGAGGCTCTCAGTGTCAGCAT CCGCAAGCAGACGCTCGAAGGTGCCGAGCGAAACTTGCGGCGCATCTCGCAAGAGATCGA TAGGTTCAAGGCCACTGATGCCAATAGGCTTCGTGCTGAATACAACAGGCTGGTTGATGG ATTGGCACAGAGGGGAAACCTGCCAATATCGGATGCTTGGCTCGCGAACCCGGCCTTGCC TGAGGACATTCTGAAGGAGGCTGTACCAGGAAACATCAGGAGGGCTGAGCATTTTCTTGC TGTTTTGCGGAGGCTTGTCAGGTTCCTAGATGGACGCCTGGAAACAGAGAATGTTGAGAA TGAAATGCCTGTTGCCTTTGTTGCTTCAATCCATTCCCAGGCTGGAATTGACCAGAAAAT GTTAAGGTTTTGTTATGATCGGCTACACTCTCTAATGCTTACCTTGGAGATAACCGATAC AGATGAGTTCATGCACATCCAGACAATTTGTGACTTTGCCACATTGATTGGAACTTATAC ACGGGGCTTTTCTATAATAATAGAACCCTATGATGAGAGAATGCCTGATATCCGTGATCC TGTGATTCAGCTCAGTTGCCATGATGCATCGCTTGCAATACAGCCTGTTTTTGAGCGTTT TCAAACAGTAGTCATAACTTCTGGTACTCTCAGCCCAATAGACCTCTACCCTCGCCTTTT GAACTTTAATCCTGTTATAAGCAGGAGCTTCACAATGTCTTTAACAAGGGATTGCATATG TCCCATGGTCTTGACAAGAGGAAGTGACCAGCTACCTGTCAGTACAAAGTTTGATATGCG TAGCGATCCTGGCGTTGTAAGGAATTATGGTCGGCTCTTGCTGGAGATGGCTTCTGCTGT GCCAGATGGCATAGTTTGTTTTTTTGTCAGTTACTCTTATATGGATGGCATTGTCAACAG CTGGAATGAGATGGGTATTTTGCAGGACATCATGCAGCATAAGTTGGTATTCATTGAAAC ACCAGATGTTGTTGAGACAACATTGGCTCTTGATAATTACAGAAAGGCATGTGATTGTGG AAGAGGTGCTATATTCTTTTCCGTTGCCAGGGGCAAAGTAGCCGAAGGTATTGATTTTGA TCGACACTATGGCAGACTTGTGATCATGTTTGGTGTTCCTTTCCAGTACACACTCAGCAG GATATTACTTGCTAGGTTGGAGTACCTAAGAGAAACTTTTCAAATAAAGGAGGGTGACTT CCTGACCTTCGATGCTTTGAGGCAAGCTGCGCAATGTGTTGGCCGTGTGATCCGTTCTAA AGCAGATTATGGAATGATGATATTTGCTGACAAGAGATACAGTCGCCATGATAAACGGTC TAAACTGCCTGGGTGGATACTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGA TATGGCTTTGCATATAGCTCGTGAGTTCCTACGGAGGATGGCGCAGCCTTACGATAAGAC GGGGAGCGGCGGCAACAAGACTCTCTTAACCGAAGAGGATTTGCAGAATATGGCGCAGGA CGCCATGGAGATGTGAAACCATGAAAGAAATTGAAAGAGAGGGAGGGGGAGAGAGAGTTT TCTGCTGTACAATACATTCAAAATTGAGGTAGAAGTCACTAATGTACAAAAAAATTTTGG CTACTCATGTGAACCAGCATGAATTCGAGCTGCACGGTTCATGCTAAATTGCTAACAAAT TGGTCCTTCCAAGCACATGTGATATTACTCTGCATCTGATATAGGTATGTACACCTTAAA GTCCTTCCGGATACTTATATCTGAATATGATGGCGGCCTCTGAATTTCAGACGTGTCGTT ACATTGCCT