Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0144300-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:2548660:2559171:-1 gene:Os05g0144300 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-like helicase, N-terminal domain containing protein. (Os05t0144300-01)
Sequence	ATGGCTGCCTCGGTGGAGGCGGCGGCGGCGGCGGTGGTGGCCCCGCCCGCCTCCGTGGGC GGTGACGAGGTCGTCGTCGGCGGCGGCGGCGGCGGGGCGTCGGAGCAGGCCAGGACGCTC ATCGGCGCGCTCAACCTGCTCTCCCGCAACCTCCCGCTGCCGCCCGCCGTCCTGCACGCC GTCTCGTCCATCTACCACGGCGGCGACGCGTGGGAGGGGGAAGGGGAGGAGGGGGGTGAA GAGGAGGTGGCGGCGGCGGCGGCGGCTGTCGGGGATGGATGCGGCGAGAGCGGGGAGGGG GAGGAGGACCGCGCGGATGCTTCTCCCGGTGCGGATGAGGGAGTCACCTTGATTCAAGAG CTTGAAGATGCTGTATTGAAGAATCAAGGACCGTATATGTCATACTCAGAGTTGACTGCT TTAAAAGAAGACCGCTTCAACACTTCCATTCAGCATAGGCTGACTGAACTTGAAGGATTA CCATCTACTAGGGGTGAAGATTTGCAAATGAAGTGTTTGCTTGAATTGTACGGGCTTAAG TTATTAGACTTGCAGAAGAAAGTAAGGACTGATATCAGTGCAGAATACTGGCTACACAAA AAATGTGCACACCCTGATAGGCAATTGTTTGACTGGGGGATGATGCGTATACGGTATCCT TTTACCATGTATGGAATTGGAGATAGTTTTTCAATGGATGCTGATGATATCAACCGCAAA AAGAGATTCTCAGAGAGGATCTCAAGACTTGAAGAGGAGGAAAAGAACCAGGCAGAGATC AGGAAGAGGAAATTTTTTTCAGAAATTCTTAATGCTGCTAGGGAGTATCAGCTACAAGTA CCGGCTTCTTACAAACGAAAAAAACAGCGCAATGATGGAGTTCTGGCATGGCATGTTCGT GCACGTCAACGTATAAATCGCATGGAAAAGAGTAGATTACAAGTTTTGAAGGCTGGTGAC CAAGAAGCTTATTTGCGTATGGTTGAGGAGAGCAAGAACGAGCGCCTGAAACTGCTCCTT GGAAAAACAAATGAGCTTCTTGAAGGAATAGGGAAAGCTGTGCAGAGACAAAAAGATGCT GAGCATGTTAGTCGCCCTGATGGATCTGAACTGCCAAAAGGGTCAGAATCTGATGATTGT TCTCAAATATCAGGCCTCAAGGTTGAATCCCCTGATGAAGAGTCCCCATCAGATGTTGAT GCAGACCATCATAGTTCTGCTGATCATAGTAAATTTAATGCTGGCCATAGGCTTGATTCT ACCGTCCACTCTATTGAAGAGAAGGTAACGGAACAACCATCAGCTCTTGAAGGTGGGGAG TTAAGACCATATCAATTAGAGGGCCTGCAATGGATGCTTTCTTTATTCAACAATAATTTG AATGGTATTCTGGCTGATGAAATGGGTTTGGGGAAAACAATTCAGACCATAGCTTTGATC GCCTATCTATTGGAGAAGAAGGAGGTTACAGGACCACACTTAATAATAGCACCAAAGGCC GTGTTACCAAATTGGTCTAATGAATTCAAAACTTGGGCTCCTAGCATTGGGACAATTCTG TATGATGGTCGTCCAGATGATAGGAAGGCTCTAAGGGAAAAGAATTTTGGACAACGGCAG TTTAATGTTTTGCTCACGCACTATGACTTGATACTGAAAGATCTGAAGTTCCTGAAGAAG GTTCACTGGCATTATCTGATAGTTGATGAAGGACATCGTTTGAAAAACCATGAATGTGCG CTTGCTCGCACACTAGTTTCTAGATATCAAATCCGTCGCCGATTACTTTTGACTGGCACT CCAATCCAAAATAGCCTACAAGAGCTGTGGTCTTTGCTGAACTTTATTCTTCCCAATATT TTTAATTCATCACAGAATTTTGAGGAATGGTTTAATGCACCATTTGCATGTGAAGTCAGC CTTAATGATGAGGAACAGCTGCTAATTATACATCGTTTGCATCAAGTGCTGCGTCCATTT TTGCTGAGGAGGAAGAAAGATGAAGTGGAAAAATATCTTCCTGTGAAAACACAAGTAATA CTCAAGTGTGACATGTCTGCTTGGCAAAAAGCATACTATGAACAAGTCACTAGCAATGGA AGGGTTAGTCTAGGATCTGGACTCAAATCAAAGGCTTTGCAAAATCTGTCGATGCAACTT AGAAAATGTTGCAATCATCCCTATCTATTCGTTGAGCATTATAACATGTATCAACGGCAG GAAATTGTTAGATCATCAGGGAAGTTTGAATTGCTTGACCGGCTACTTCCAAAATTGCAG AGAGCTGGTCACAGGGTTCTGCTTTTCTCTCAGATGACAAAACTGCTTGATATCTTAGAA GTATATTTGCAAATGTACCAGTTCAAGTACATGAGGCTTGATGGATCTACGAAGACTGAA GAGCGAGGGAGATTATTGGCAGATTTTAACAAGAAGGACTCAGAATATTTCTTGTTTCTT CTCAGCACCCGAGCTGGAGGCCTTGGGTTGAACTTGCAGACTGCAGACACTGTTATTATT TTTGACAGTGACTGGAATCCTCAAATGGATCAGCAGGCTGAAGACCGTGCCCACCGTATT GGACAAAAGAATGAAGTGCGTGTATTCGTTCTTGTTAGTGTTGGCTCAATTGAAGAAGAG ATCTTGGACCGTGCAAAACAGAAGATGGGTATTGATGCAAAAGTTATCCAGGCTGGGCTG TTCAACACAACCTCCACAGCTCAGGATAGGCGAGCATTGCTGCAGGAGATCCTGAGGAGA GGAACAAGCTCACTGGGAACTGATATCCCTAGTGAGCGTGAAATAAATCGTTTGGCTGCT CGTAATGATGAAGAATTCTGGTTGTTTGAGAAGATGGATGAAGAAAGGCGGCAAAGAGAA AACTACAAACCGAGGCTCATGGAGGGAATTGAGGTTCCAGACTGGGTGTTTGCCAATGAT ACTTTAACAGAGAAGATACCTGCAGATGAACCCCAGAATGTTCTGCTAACTACGAAGAGA CGCAGGAAAGAGGTTGTCTACTCAGACTCTTTTGGTGATCAGTGGATGAAAGCAGATGAT GTAGTTGAAGAGACTCCAAGGATGGCTCCAAGAGCAAAGCGGAGCGCTTATTCGTCTGAT GTACAAGAAGTCGATTTCAGTGAGAGGAGGAAAAGGCATAAATCTCTAGTGAACATTGCA GATGATGCCAGCATTCCAATGTGGACACCAGAAAAAGTAAGGGCTGGGGTTTCTTCATAT AGCAAGGATGAGAATGAAGACGATGCCGAAGATGAATCCACCACAAGTGTTTTGCAGGGG GGCAGTTTTACATGGAAGACCCTTAGAAGGAAAAGGTCAAGCCACTTCTCCAATTCCTCA GATTCAAAAGGGCGCTCGGCATTCTAA

Peptide Sequence

PEP ID	Os05t0144300-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:2548660:2559171:-1 gene:Os05g0144300 transcript:Os05t0144300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-like helicase, N-terminal domain containing protein. (Os05t0144300-01)
Sequence	MAASVEAAAAAVVAPPASVGGDEVVVGGGGGGASEQARTLIGALNLLSRNLPLPPAVLHA VSSIYHGGDAWEGEGEEGGEEEVAAAAAAVGDGCGESGEGEEDRADASPGADEGVTLIQE LEDAVLKNQGPYMSYSELTALKEDRFNTSIQHRLTELEGLPSTRGEDLQMKCLLELYGLK LLDLQKKVRTDISAEYWLHKKCAHPDRQLFDWGMMRIRYPFTMYGIGDSFSMDADDINRK KRFSERISRLEEEEKNQAEIRKRKFFSEILNAAREYQLQVPASYKRKKQRNDGVLAWHVR ARQRINRMEKSRLQVLKAGDQEAYLRMVEESKNERLKLLLGKTNELLEGIGKAVQRQKDA EHVSRPDGSELPKGSESDDCSQISGLKVESPDEESPSDVDADHHSSADHSKFNAGHRLDS TVHSIEEKVTEQPSALEGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI AYLLEKKEVTGPHLIIAPKAVLPNWSNEFKTWAPSIGTILYDGRPDDRKALREKNFGQRQ FNVLLTHYDLILKDLKFLKKVHWHYLIVDEGHRLKNHECALARTLVSRYQIRRRLLLTGT PIQNSLQELWSLLNFILPNIFNSSQNFEEWFNAPFACEVSLNDEEQLLIIHRLHQVLRPF LLRRKKDEVEKYLPVKTQVILKCDMSAWQKAYYEQVTSNGRVSLGSGLKSKALQNLSMQL RKCCNHPYLFVEHYNMYQRQEIVRSSGKFELLDRLLPKLQRAGHRVLLFSQMTKLLDILE VYLQMYQFKYMRLDGSTKTEERGRLLADFNKKDSEYFLFLLSTRAGGLGLNLQTADTVII FDSDWNPQMDQQAEDRAHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKMGIDAKVIQAGL FNTTSTAQDRRALLQEILRRGTSSLGTDIPSEREINRLAARNDEEFWLFEKMDEERRQRE NYKPRLMEGIEVPDWVFANDTLTEKIPADEPQNVLLTTKRRRKEVVYSDSFGDQWMKADD VVEETPRMAPRAKRSAYSSDVQEVDFSERRKRHKSLVNIADDASIPMWTPEKVRAGVSSY SKDENEDDAEDESTTSVLQGGSFTWKTLRRKRSSHFSNSSDSKGRSAF

Transcript Sequence

Transcript ID	Os05t0144300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:2548660:2559171:-1 gene:Os05g0144300 gene_biotype:protein_coding transcript_biotype:protein_coding description:DEAD-like helicase, N-terminal domain containing protein. (Os05t0144300-01)
Sequence	GACCGTTTGCCGCGCCCCGATTTGAACCCTCGCCGCCTCGCCTCGCCTCGCGGCCGTGGA GGCGGAGCGAAACCCTAGGGAGGCGATGGCTGCCTCGGTGGAGGCGGCGGCGGCGGCGGT GGTGGCCCCGCCCGCCTCCGTGGGCGGTGACGAGGTCGTCGTCGGCGGCGGCGGCGGCGG GGCGTCGGAGCAGGCCAGGACGCTCATCGGCGCGCTCAACCTGCTCTCCCGCAACCTCCC GCTGCCGCCCGCCGTCCTGCACGCCGTCTCGTCCATCTACCACGGCGGCGACGCGTGGGA GGGGGAAGGGGAGGAGGGGGGTGAAGAGGAGGTGGCGGCGGCGGCGGCGGCTGTCGGGGA TGGATGCGGCGAGAGCGGGGAGGGGGAGGAGGACCGCGCGGATGCTTCTCCCGGTGCGGA TGAGGGAGTCACCTTGATTCAAGAGCTTGAAGATGCTGTATTGAAGAATCAAGGACCGTA TATGTCATACTCAGAGTTGACTGCTTTAAAAGAAGACCGCTTCAACACTTCCATTCAGCA TAGGCTGACTGAACTTGAAGGATTACCATCTACTAGGGGTGAAGATTTGCAAATGAAGTG TTTGCTTGAATTGTACGGGCTTAAGTTATTAGACTTGCAGAAGAAAGTAAGGACTGATAT CAGTGCAGAATACTGGCTACACAAAAAATGTGCACACCCTGATAGGCAATTGTTTGACTG GGGGATGATGCGTATACGGTATCCTTTTACCATGTATGGAATTGGAGATAGTTTTTCAAT GGATGCTGATGATATCAACCGCAAAAAGAGATTCTCAGAGAGGATCTCAAGACTTGAAGA GGAGGAAAAGAACCAGGCAGAGATCAGGAAGAGGAAATTTTTTTCAGAAATTCTTAATGC TGCTAGGGAGTATCAGCTACAAGTACCGGCTTCTTACAAACGAAAAAAACAGCGCAATGA TGGAGTTCTGGCATGGCATGTTCGTGCACGTCAACGTATAAATCGCATGGAAAAGAGTAG ATTACAAGTTTTGAAGGCTGGTGACCAAGAAGCTTATTTGCGTATGGTTGAGGAGAGCAA GAACGAGCGCCTGAAACTGCTCCTTGGAAAAACAAATGAGCTTCTTGAAGGAATAGGGAA AGCTGTGCAGAGACAAAAAGATGCTGAGCATGTTAGTCGCCCTGATGGATCTGAACTGCC AAAAGGGTCAGAATCTGATGATTGTTCTCAAATATCAGGCCTCAAGGTTGAATCCCCTGA TGAAGAGTCCCCATCAGATGTTGATGCAGACCATCATAGTTCTGCTGATCATAGTAAATT TAATGCTGGCCATAGGCTTGATTCTACCGTCCACTCTATTGAAGAGAAGGTAACGGAACA ACCATCAGCTCTTGAAGGTGGGGAGTTAAGACCATATCAATTAGAGGGCCTGCAATGGAT GCTTTCTTTATTCAACAATAATTTGAATGGTATTCTGGCTGATGAAATGGGTTTGGGGAA AACAATTCAGACCATAGCTTTGATCGCCTATCTATTGGAGAAGAAGGAGGTTACAGGACC ACACTTAATAATAGCACCAAAGGCCGTGTTACCAAATTGGTCTAATGAATTCAAAACTTG GGCTCCTAGCATTGGGACAATTCTGTATGATGGTCGTCCAGATGATAGGAAGGCTCTAAG GGAAAAGAATTTTGGACAACGGCAGTTTAATGTTTTGCTCACGCACTATGACTTGATACT GAAAGATCTGAAGTTCCTGAAGAAGGTTCACTGGCATTATCTGATAGTTGATGAAGGACA TCGTTTGAAAAACCATGAATGTGCGCTTGCTCGCACACTAGTTTCTAGATATCAAATCCG TCGCCGATTACTTTTGACTGGCACTCCAATCCAAAATAGCCTACAAGAGCTGTGGTCTTT GCTGAACTTTATTCTTCCCAATATTTTTAATTCATCACAGAATTTTGAGGAATGGTTTAA TGCACCATTTGCATGTGAAGTCAGCCTTAATGATGAGGAACAGCTGCTAATTATACATCG TTTGCATCAAGTGCTGCGTCCATTTTTGCTGAGGAGGAAGAAAGATGAAGTGGAAAAATA TCTTCCTGTGAAAACACAAGTAATACTCAAGTGTGACATGTCTGCTTGGCAAAAAGCATA CTATGAACAAGTCACTAGCAATGGAAGGGTTAGTCTAGGATCTGGACTCAAATCAAAGGC TTTGCAAAATCTGTCGATGCAACTTAGAAAATGTTGCAATCATCCCTATCTATTCGTTGA GCATTATAACATGTATCAACGGCAGGAAATTGTTAGATCATCAGGGAAGTTTGAATTGCT TGACCGGCTACTTCCAAAATTGCAGAGAGCTGGTCACAGGGTTCTGCTTTTCTCTCAGAT GACAAAACTGCTTGATATCTTAGAAGTATATTTGCAAATGTACCAGTTCAAGTACATGAG GCTTGATGGATCTACGAAGACTGAAGAGCGAGGGAGATTATTGGCAGATTTTAACAAGAA GGACTCAGAATATTTCTTGTTTCTTCTCAGCACCCGAGCTGGAGGCCTTGGGTTGAACTT GCAGACTGCAGACACTGTTATTATTTTTGACAGTGACTGGAATCCTCAAATGGATCAGCA GGCTGAAGACCGTGCCCACCGTATTGGACAAAAGAATGAAGTGCGTGTATTCGTTCTTGT TAGTGTTGGCTCAATTGAAGAAGAGATCTTGGACCGTGCAAAACAGAAGATGGGTATTGA TGCAAAAGTTATCCAGGCTGGGCTGTTCAACACAACCTCCACAGCTCAGGATAGGCGAGC ATTGCTGCAGGAGATCCTGAGGAGAGGAACAAGCTCACTGGGAACTGATATCCCTAGTGA GCGTGAAATAAATCGTTTGGCTGCTCGTAATGATGAAGAATTCTGGTTGTTTGAGAAGAT GGATGAAGAAAGGCGGCAAAGAGAAAACTACAAACCGAGGCTCATGGAGGGAATTGAGGT TCCAGACTGGGTGTTTGCCAATGATACTTTAACAGAGAAGATACCTGCAGATGAACCCCA GAATGTTCTGCTAACTACGAAGAGACGCAGGAAAGAGGTTGTCTACTCAGACTCTTTTGG TGATCAGTGGATGAAAGCAGATGATGTAGTTGAAGAGACTCCAAGGATGGCTCCAAGAGC AAAGCGGAGCGCTTATTCGTCTGATGTACAAGAAGTCGATTTCAGTGAGAGGAGGAAAAG GCATAAATCTCTAGTGAACATTGCAGATGATGCCAGCATTCCAATGTGGACACCAGAAAA AGTAAGGGCTGGGGTTTCTTCATATAGCAAGGATGAGAATGAAGACGATGCCGAAGATGA ATCCACCACAAGTGTTTTGCAGGGGGGCAGTTTTACATGGAAGACCCTTAGAAGGAAAAG GTCAAGCCACTTCTCCAATTCCTCAGATTCAAAAGGGCGCTCGGCATTCTAATCTTGGGA TTCAGGAATGTTGTTGCCCTGATGCATTTGTTTGAATCCTCTCCTTTGAGAAAGGAGTGC TCCTGGATAGAAATTAACAGGGGGTATTTAGGGTACATTTAAGCTTACAAATTTTAGGAT TAGTGGTATTGTATGGATTTCTTGGTATTAAATTGTGTCCATCAGAACTAAAACATCGTA GTTGGCTTTCTGGTATAAAGTAGATGTACTGTTCGTCTCGCCGTGATATATCCAGTGGCA GAGTGGCTTTCTGGTGTG