Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0128400-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:1675495:1679054:-1 gene:Os05g0128400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:metal tolerance protein 1 description:Cation diffusion facilitator (CDF) family protein, Bivalent cation transporter, Translocation of Zn, Cd and other heavy metals, Ion homeostasis (Os05t0128400-01)
Sequence	ATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTCATCA TCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGAT TCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCATTATT GCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGCAAAC AGTTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATA TCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTT TTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGCTGGT ATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGGCTCC CTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGGCTGTCTTGCTT GGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGACCAT GATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATCAAGAGCATGGCCATGTA CATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCCAGGC ACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATGCTGGTTGTGAC AGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCAATGTACACAGT GCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGATTGGAGGGGCT ATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTTCTCC GTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGATGGAG AGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGT GTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCG TGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGG TACATCAAGTCTGAGTACAACATCAGCCATGTGACCATTCAGATTGAGCGCGAGTAG

Peptide Sequence

PEP ID	Os05t0128400-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:1675495:1679054:-1 gene:Os05g0128400 transcript:Os05t0128400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:metal tolerance protein 1 description:Cation diffusion facilitator (CDF) family protein, Bivalent cation transporter, Translocation of Zn, Cd and other heavy metals, Ion homeostasis (Os05t0128400-01)
Sequence	MDSHNSAPPQIAEVRMDISSSTSVAAGNKVCRGAACDFSDSSNSSKDARERMASMRKLII AVILCIIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPQQSYGF FRIEILGALVSIQLIWLLAGILVYEAIVRLINESGEVQGSLMFAVSAFGLFVNIIMAVLL GHDHGHGHGHGHGHGHSHDHDHGGSDHDHHHHEDQEHGHVHHHEDGHGNSITVNLHHHPG TGHHHHDAEEPLLKSDAGCDSTQSGAKDAKKARRNINVHSAYLHVLGDSIQSIGVMIGGA IIWYKPEWKIIDLICTLIFSVIVLFTTIKMLRNILEVLMESTPREIDATSLENGLRDMDG VVAVHELHIWAITVGKVLLACHVTITQDADADQMLDKVIGYIKSEYNISHVTIQIERE

Transcript Sequence

Transcript ID	Os05t0128400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:1675495:1679054:-1 gene:Os05g0128400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:metal tolerance protein 1 description:Cation diffusion facilitator (CDF) family protein, Bivalent cation transporter, Translocation of Zn, Cd and other heavy metals, Ion homeostasis (Os05t0128400-01)
Sequence	ATCCTACCCCCCGTTCTCTCCTCCCCATCTCCAACGCACGCACGCGCCATCACCACCACC TCGACGCCGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCC TCATCCCCAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGG ACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTG ACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGA AGCTCATTATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTA TCAAAGCAAACAGTTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGG CCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGT CATATGGGTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGC TCCTTGCTGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGG TCCAGGGCTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGG CTGTCTTGCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATT CCCATGACCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATCAAGAGC ATGGCCATGTACATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATC ACCATCCAGGCACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATG CTGGTTGTGACAGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCA ATGTACACAGTGCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGA TTGGAGGGGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCC TCATCTTCTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGG TCCTGATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCG ACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGG TTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACA AGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGTGACCATTCAGATTGAGC GCGAGTAGGCTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTT CATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACT GTTAGCTCTGCAGTGCAAATCAGATCAGCAGAGTCCAACAATTCCTGCAGGTTCATCTGA ATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATCTTAGTCA ATTAGGTGAGTTGATGTTAATCAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTT CAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGC GCCCAGCCGTACTAGTTTTTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTT CGTTTGGCCTT