Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0128200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:1662022:1664058:1 gene:Os05g0128200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33 description:Hypothetical conserved gene. (Os05t0128200-01);Similar to Transposable element Mu1 sequence. (Os05t0128200-02)
Sequence	ATGTGCTCTGGGCCGCGCAAGCCGTCCACACCGCCGCTGCCGCAGCAGCAGAAGGAGGCG ACGGTGATGGCGGCGTCCTTGCTTCTTGAGCTGGCGGCAGCGGACGACGTGGCGGCGGTG AGGAGGGTCGTGGAGGAGGAGAAGGTGTCTCTTGGCGTGGCTGGGTTGTGGTATGGGCCT TCGGCGAGCGGCGTGGCGAGGCTCGGGATGGAGCGGAGGACGGCGGCGATGGTGGCGGCG CTGTACGGGAGCACGGGGGTGCTTGGGTATGTCGTGGCGGCAGCGCCGGCGGAGGCCGCG CGCGCGTCGGAGACGGATGGGGCCACGCCGCTGCACATGGCGGCTGCCGGTGGCGCGGCG AACGCGGTCGCGGCCACGCGCCTGTTGCTCGCCGCGGGGGCGTCGGTCGACGCGCTCTCG GCTTCGGGGCTCCGCGCCGGTGACCTCCTCCCGCGCGCCACCGCGGCGGAGAAGGCCATC CGGCTGCTGCTCAAGTCGCCGGCCGTGTCGCCGTCGTCGTCGCCGAAGAAGTCGGCCTCG CCGCCGTCGCCGCCGCCGCCGCAGGAGGCGAAGAAGGAGTACCCGCCTGACCTGACGCTG CCCGACCTCAAGAGCGGACTGTTCAGCACCGACGAGTTCCGCATGTACAGCTTCAAGGTG AAGCCGTGCTCCCGCGCCTACTCCCATGACTGGACCGAGTGCCCCTTCGTCCACCCCGGC GAGAACGCGCGCCGCCGCGACCCTCGCCGCTACTCCTACAGCTGCGTGCCTTGCCCGGAG TTCCGCAAGGGCGGCTCGTGCCGCAAGGGCGACGCGTGCGAGTACGCCCATGGCGTGTTC GAGTGCTGGCTCCACCCGGCGCAGTACAGGACGCGCCTCTGCAAGGACGAGGTCGGCTGC GCGCGCCGCATCTGCTTCTTCGCCCACAAGCCCGACGAGCTCCGCGCCGTCAACCCCTCC GCCGTGTCCGTCGGCATGCAGCCCACCGTATCGTCGCCGCGCTCCTCGCCGCCCAACGGG CTCGACATGGCGGCGGCGGCGGCGGCGATGATGAGCCCCGCCTGGCCGTCGTCCCCAGCG AGCCGCCTCAAGACGGCGCTCGGCGCGCGGGAGCTCGACTTCGACCTCGAGATGCTCGCG CTGGACCAGTACCAGCAGAAGCTGTTCGACAAGGTGTCCGGCGCGCCGTCGCCGAGGGCG AGCTGGGGCGCCGCGGCGAACGGCCTCGCCACCGCGTCGCCGGCGAGGGCCGTGCCGGAC TACACCGACCTGCTCGGCTCCGTCGACCCGGCCATGCTGTCCCAGCTCCACGCGCTGTCC CTCAAGCAGGCCGGCGACATGCCCGCGTACAGCTCCATGGCGGACACCACGCAGATGCAC ATGCCGACCTCGCCGATGGTGGGCGGCGCGAACACCGCGTTCGGGCTGGACCACTCCATG GCGAAGGCGATCATGAGCTCCCGCGCCTCGGCGTTCGCCAAGCGCAGCCAGAGCTTCATC GACCGCGGAGGCCGCGCCCCGGCGGCGCGTTCGCTCATGTCGCCGGCGACGACCGGCGCG CCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGC GACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATG CCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTC AAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTG GCATGA

Peptide Sequence

PEP ID	Os05t0128200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:1662022:1664058:1 gene:Os05g0128200 transcript:Os05t0128200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33 description:Hypothetical conserved gene. (Os05t0128200-01);Similar to Transposable element Mu1 sequence. (Os05t0128200-02)
Sequence	MCSGPRKPSTPPLPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGP SASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAA NAVAATRLLLAAGASVDALSASGLRAGDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSAS PPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPG ENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGC ARRICFFAHKPDELRAVNPSAVSVGMQPTVSSPRSSPPNGLDMAAAAAAMMSPAWPSSPA SRLKTALGARELDFDLEMLALDQYQQKLFDKVSGAPSPRASWGAAANGLATASPARAVPD YTDLLGSVDPAMLSQLHALSLKQAGDMPAYSSMADTTQMHMPTSPMVGGANTAFGLDHSM AKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQG DELHKLRKSASFAFRGQSAMPVATHAAAAEPDVSWVNSLVKDGHAAGDIFAQWPEQEQMV A

Transcript Sequence

Transcript ID	Os05t0128200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:1662022:1664058:1 gene:Os05g0128200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33 description:Hypothetical conserved gene. (Os05t0128200-01);Similar to Transposable element Mu1 sequence. (Os05t0128200-02)
Sequence	CTCTCCAACCACACCACTCTCCAAATCCATCCATCGATCGAGAATTCCTCTTCTCCCTCT TCTTGTTCTTCTTCTCCTCTCTGAATTTAACAAGAAATCAAGAACTAGGTGTTTGTTTTG ACTAACAAGAACTCGGTCGAACACTCTGCGTGCGTGTTTGTTTGTGTGTGTCATGTGCTC TGGGCCGCGCAAGCCGTCCACACCGCCGCTGCCGCAGCAGCAGAAGGAGGCGACGGTGAT GGCGGCGTCCTTGCTTCTTGAGCTGGCGGCAGCGGACGACGTGGCGGCGGTGAGGAGGGT CGTGGAGGAGGAGAAGGTGTCTCTTGGCGTGGCTGGGTTGTGGTATGGGCCTTCGGCGAG CGGCGTGGCGAGGCTCGGGATGGAGCGGAGGACGGCGGCGATGGTGGCGGCGCTGTACGG GAGCACGGGGGTGCTTGGGTATGTCGTGGCGGCAGCGCCGGCGGAGGCCGCGCGCGCGTC GGAGACGGATGGGGCCACGCCGCTGCACATGGCGGCTGCCGGTGGCGCGGCGAACGCGGT CGCGGCCACGCGCCTGTTGCTCGCCGCGGGGGCGTCGGTCGACGCGCTCTCGGCTTCGGG GCTCCGCGCCGGTGACCTCCTCCCGCGCGCCACCGCGGCGGAGAAGGCCATCCGGCTGCT GCTCAAGTCGCCGGCCGTGTCGCCGTCGTCGTCGCCGAAGAAGTCGGCCTCGCCGCCGTC GCCGCCGCCGCCGCAGGAGGCGAAGAAGGAGTACCCGCCTGACCTGACGCTGCCCGACCT CAAGAGCGGACTGTTCAGCACCGACGAGTTCCGCATGTACAGCTTCAAGGTGAAGCCGTG CTCCCGCGCCTACTCCCATGACTGGACCGAGTGCCCCTTCGTCCACCCCGGCGAGAACGC GCGCCGCCGCGACCCTCGCCGCTACTCCTACAGCTGCGTGCCTTGCCCGGAGTTCCGCAA GGGCGGCTCGTGCCGCAAGGGCGACGCGTGCGAGTACGCCCATGGCGTGTTCGAGTGCTG GCTCCACCCGGCGCAGTACAGGACGCGCCTCTGCAAGGACGAGGTCGGCTGCGCGCGCCG CATCTGCTTCTTCGCCCACAAGCCCGACGAGCTCCGCGCCGTCAACCCCTCCGCCGTGTC CGTCGGCATGCAGCCCACCGTATCGTCGCCGCGCTCCTCGCCGCCCAACGGGCTCGACAT GGCGGCGGCGGCGGCGGCGATGATGAGCCCCGCCTGGCCGTCGTCCCCAGCGAGCCGCCT CAAGACGGCGCTCGGCGCGCGGGAGCTCGACTTCGACCTCGAGATGCTCGCGCTGGACCA GTACCAGCAGAAGCTGTTCGACAAGGTGTCCGGCGCGCCGTCGCCGAGGGCGAGCTGGGG CGCCGCGGCGAACGGCCTCGCCACCGCGTCGCCGGCGAGGGCCGTGCCGGACTACACCGA CCTGCTCGGCTCCGTCGACCCGGCCATGCTGTCCCAGCTCCACGCGCTGTCCCTCAAGCA GGCCGGCGACATGCCCGCGTACAGCTCCATGGCGGACACCACGCAGATGCACATGCCGAC CTCGCCGATGGTGGGCGGCGCGAACACCGCGTTCGGGCTGGACCACTCCATGGCGAAGGC GATCATGAGCTCCCGCGCCTCGGCGTTCGCCAAGCGCAGCCAGAGCTTCATCGACCGCGG AGGCCGCGCCCCGGCGGCGCGTTCGCTCATGTCGCCGGCGACGACCGGCGCGCCGTCCAT TCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCT GCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGC GACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGG CCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGATC ATCAGAGGCTCATAGCAACCTAGCTAACCAAAAAAAAAGAAGTTCTTTCTTTCAATT