Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0128000-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:1643484:1644746:1 gene:Os05g0128000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os05t0128000-00)
Sequence

ATGGATCCCTTCCACCACCTCAACTCCTCCTTCTCCAACCCCTACCACCCACTCCTCGCC
TCCCCGCCCCACCACTTCGCCCCCGACCCACTCCCCCCACCTCCTCCTCCGCCGCCGCCG
CCGCTGCTCCCCGCCGACCCGCCGTCGCTCGAGCGGGAGCGCCTCCCGCAGTGGTCCCAC
GCCGAGACCGCCGCCTTCCTCGCCATCCGCGCCGACCTCGACCACTCCTTCCTCTCCACC
AAGCGCAACAAGGCGCTCTGGGAGGCCGCCTCGGCGCGCCTCCACGCCCTCGGCTTCGCC
AGGACCCCCGATCAGTGCAAGTCCAAGTGGAAGAATCTCGTCACCCGGTTCAAGGGCACC
GAGGGCGCCGCCGCCGTCGCCGCCGCGGGGACGGATCAGATGCAGGGGGGGCAGGGCGGT
GGTGCGGCGGCGAGGGGGTCGTCGTCGTCGTTCCCGTTCCATGATGAGTTGAGGAGGATT
TTCGACGCCAGGGTTGAGAGGGCGCGCGCATTGGAGAGGAAGAAGGTTAAGGGGAAGGAT
CCTGATGATGACCACGACGGTGGTGGTGATGGGGATGAGGATGATGAGGAGGAGGCGGAT
CAGCAGGTCGACGAGGAGGACGACGGGGCGTCCGGGGACACGACGAGGGCCGGGTCGAAG
AAGCGGAGGAGGAAGGCGGCGGCGGCGGCGAGGAGGACGGGTTCGACGGGCGGGGTGGAG
GGCGAGGTGGAGGCGATGCTGCGGGAGTTCATGCGGCGGCAGATTGAGATGGAGGAGCGG
TGGATGGAGGCGGCGGAGGCGCGCGAGGCCGAGCGCCGCGCCCGCGAGGAGGAGTGGCGG
ACCGCCATGGTCGCGCTCGGCGAGGAGCGCCTCGCGCTCGTCCGACGCTGGCGCGAGCGC
GAGGACGCGTGGCGCGCGCGCGCCGAGGAGCGCGAGGAGCGCCGCCACCAGCTCGTCGCC
GCACTCCTCGCCAAGCTCGGCGCCGGCGACGCGTCCGCCTGA

Peptide Sequence

PEP ID

Os05t0128000-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:1643484:1644746:1 gene:Os05g0128000 transcript:Os05t0128000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os05t0128000-00)
Sequence

MDPFHHLNSSFSNPYHPLLASPPHHFAPDPLPPPPPPPPPPLLPADPPSLERERLPQWSH
AETAAFLAIRADLDHSFLSTKRNKALWEAASARLHALGFARTPDQCKSKWKNLVTRFKGT
EGAAAVAAAGTDQMQGGQGGGAAARGSSSSFPFHDELRRIFDARVERARALERKKVKGKD
PDDDHDGGGDGDEDDEEEADQQVDEEDDGASGDTTRAGSKKRRRKAAAAARRTGSTGGVE
GEVEAMLREFMRRQIEMEERWMEAAEAREAERRAREEEWRTAMVALGEERLALVRRWRER
EDAWRARAEEREERRHQLVAALLAKLGAGDASA

Transcript Sequence

Transcript ID

Os05t0128000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:1643484:1644746:1 gene:Os05g0128000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os05t0128000-00)
Sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATCGTCTTCTCCACTTCCTCCTCGC
ATTTCCCACTAGTGAGGCGGAGGCCATAGCCATGGATCCCTTCCACCACCTCAACTCCTC
CTTCTCCAACCCCTACCACCCACTCCTCGCCTCCCCGCCCCACCACTTCGCCCCCGACCC
ACTCCCCCCACCTCCTCCTCCGCCGCCGCCGCCGCTGCTCCCCGCCGACCCGCCGTCGCT
CGAGCGGGAGCGCCTCCCGCAGTGGTCCCACGCCGAGACCGCCGCCTTCCTCGCCATCCG
CGCCGACCTCGACCACTCCTTCCTCTCCACCAAGCGCAACAAGGCGCTCTGGGAGGCCGC
CTCGGCGCGCCTCCACGCCCTCGGCTTCGCCAGGACCCCCGATCAGTGCAAGTCCAAGTG
GAAGAATCTCGTCACCCGGTTCAAGGGCACCGAGGGCGCCGCCGCCGTCGCCGCCGCGGG
GACGGATCAGATGCAGGGGGGGCAGGGCGGTGGTGCGGCGGCGAGGGGGTCGTCGTCGTC
GTTCCCGTTCCATGATGAGTTGAGGAGGATTTTCGACGCCAGGGTTGAGAGGGCGCGCGC
ATTGGAGAGGAAGAAGGTTAAGGGGAAGGATCCTGATGATGACCACGACGGTGGTGGTGA
TGGGGATGAGGATGATGAGGAGGAGGCGGATCAGCAGGTCGACGAGGAGGACGACGGGGC
GTCCGGGGACACGACGAGGGCCGGGTCGAAGAAGCGGAGGAGGAAGGCGGCGGCGGCGGC
GAGGAGGACGGGTTCGACGGGCGGGGTGGAGGGCGAGGTGGAGGCGATGCTGCGGGAGTT
CATGCGGCGGCAGATTGAGATGGAGGAGCGGTGGATGGAGGCGGCGGAGGCGCGCGAGGC
CGAGCGCCGCGCCCGCGAGGAGGAGTGGCGGACCGCCATGGTCGCGCTCGGCGAGGAGCG
CCTCGCGCTCGTCCGACGCTGGCGCGAGCGCGAGGACGCGTGGCGCGCGCGCGCCGAGGA
GCGCGAGGAGCGCCGCCACCAGCTCGTCGCCGCACTCCTCGCCAAGCTCGGCGCCGGCGA
CGCGTCCGCCTGAGATCGATCGATCCCTCCCCCCATTGTTCCATCCGCACCGCACCGCCG
CCGGTACGAACCAAATCCCCTACCACCTCCTCCTCATCAACAGCATCTGCATCATGTACT
GCAACTGCTTGATGATGATCTTGTTGTGTTCTTCCAAATGGAGATCGAATCGATCATAAT
TCT