Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0125400-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:1466804:1469116:1 gene:Os05g0125400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to protein kinase APK1B. (Os05t0125400-00)
Sequence

ATGAGCTGCTTTTCATGCTTCAAGCCTGAAAAGAAGATGAAGTCAAAGGGGATGGAGGCA
AGGGAGGTCACAGTTGTGAAGAAACATGGAGCATCCCTTAAGAATTCTGAATCGGAAAAG
TTGCCATGTGTCTCCTCAGACCACAAGCAATCATCTGAAGCAGCAGCAAATACTGAACCA
CACAATGGAAGCCCAGTTACTGCCAGAACTGGAAAAAAATTCACGTTCCGTGAGCTAGCG
ACAGCCACCAATAACTTCCGTTCTGACCGTCTTCTGGGAGAGGGGGGCTTTGGCAGGGTC
TACAAGGGACAGCTTGAAAATGGCCAGCTTGTAGCTGTCAAACGACTGGATCTTAGTGGA
TTTCAAGGTAACAAAGAGTTCCTAGTTGAGGTGATGATGCTCAGCCTCTTAAACCATCCA
AACCTGGTCAGTTTGGTTGGCTATTGCTCAGACGGAGATCAAAGATTACTGGTGTATGAG
TACATGGCCCATGGCTCACTTGCAGACCACTTGCTAGAAAACACCCCAGATCAAGTACCA
CTAAGTTGGCATATCAGGATGAAGATAGCCCATGGAACTGCTAAAGGGCTTGAATACCTC
CATGAGAAGGCTAATCCACCTGTCATCTATCGGGATCTCAAATCACCCAACATCCTTCTT
GACAACGAATACAACCCTAAGCTGTCAGACTTTGGGCTTGCAAAGCTAGGCCCTGTTGGG
GGGAAGGCACATATCTCAACTCGGGTGATGGGCACATATGGATACTGTGCTCCAGAATAC
ATAAAGACACGCCAGCTAACTACCAAGACTGATGTCTACAGTTTTGGGGTTTTTCTACTT
GAGTTGATCACAGGAAGAAGAGCTGTAGATTCATCCAGACCAGAATGTGATCAAATCCTC
GTTAAATGGGCCAAACCCATGCTCAAAAATCCAAGTAGGCACCATGAGCTGGTGGACCCA
CTTCTTAGAGGTGACTACCCAAGGGGAGATTTGAACCAGGCTGTGGCCGTGGCAGCAATG
TGCCTACAAGAGGAAGCCTCAGTTCGGCCATACATGAGTGACACTGTTGTCGCATTGGGA
TTCCTCGCAGAAGTACCCTCAGGCTATAAAGAGAAGATTAACACTGTGCCCCAAAACAAA
CAGGATAAAGATCCCTCATTTACTGGTAGCACTAAGCAAGATCAAAGATCATTCGATCGT
CAACGAGCAGTTACTGAGGCCATTGAATGGGGAGCCACGAGGCAAAAACAGAAAGCTCAA
ATCCAAGAGAAAACAAGTCACTTGCAGGGCATTGTCGCCCCCACTGAAACCAACAGGTTG
TAA

Peptide Sequence

PEP ID

Os05t0125400-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:1466804:1469116:1 gene:Os05g0125400 transcript:Os05t0125400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to protein kinase APK1B. (Os05t0125400-00)
Sequence

MSCFSCFKPEKKMKSKGMEAREVTVVKKHGASLKNSESEKLPCVSSDHKQSSEAAANTEP
HNGSPVTARTGKKFTFRELATATNNFRSDRLLGEGGFGRVYKGQLENGQLVAVKRLDLSG
FQGNKEFLVEVMMLSLLNHPNLVSLVGYCSDGDQRLLVYEYMAHGSLADHLLENTPDQVP
LSWHIRMKIAHGTAKGLEYLHEKANPPVIYRDLKSPNILLDNEYNPKLSDFGLAKLGPVG
GKAHISTRVMGTYGYCAPEYIKTRQLTTKTDVYSFGVFLLELITGRRAVDSSRPECDQIL
VKWAKPMLKNPSRHHELVDPLLRGDYPRGDLNQAVAVAAMCLQEEASVRPYMSDTVVALG
FLAEVPSGYKEKINTVPQNKQDKDPSFTGSTKQDQRSFDRQRAVTEAIEWGATRQKQKAQ
IQEKTSHLQGIVAPTETNRL

Transcript Sequence

Transcript ID

Os05t0125400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:1466804:1469116:1 gene:Os05g0125400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to protein kinase APK1B. (Os05t0125400-00)
Sequence

ATGAGCTGCTTTTCATGCTTCAAGCCTGAAAAGAAGATGAAGTCAAAGGGGATGGAGGCA
AGGGAGGTCACAGTTGTGAAGAAACATGGAGCATCCCTTAAGAATTCTGAATCGGAAAAG
TTGCCATGTGTCTCCTCAGACCACAAGCAATCATCTGAAGCAGCAGCAAATACTGAACCA
CACAATGGAAGCCCAGTTACTGCCAGAACTGGAAAAAAATTCACGTTCCGTGAGCTAGCG
ACAGCCACCAATAACTTCCGTTCTGACCGTCTTCTGGGAGAGGGGGGCTTTGGCAGGGTC
TACAAGGGACAGCTTGAAAATGGCCAGCTTGTAGCTGTCAAACGACTGGATCTTAGTGGA
TTTCAAGGTAACAAAGAGTTCCTAGTTGAGGTGATGATGCTCAGCCTCTTAAACCATCCA
AACCTGGTCAGTTTGGTTGGCTATTGCTCAGACGGAGATCAAAGATTACTGGTGTATGAG
TACATGGCCCATGGCTCACTTGCAGACCACTTGCTAGAAAACACCCCAGATCAAGTACCA
CTAAGTTGGCATATCAGGATGAAGATAGCCCATGGAACTGCTAAAGGGCTTGAATACCTC
CATGAGAAGGCTAATCCACCTGTCATCTATCGGGATCTCAAATCACCCAACATCCTTCTT
GACAACGAATACAACCCTAAGCTGTCAGACTTTGGGCTTGCAAAGCTAGGCCCTGTTGGG
GGGAAGGCACATATCTCAACTCGGGTGATGGGCACATATGGATACTGTGCTCCAGAATAC
ATAAAGACACGCCAGCTAACTACCAAGACTGATGTCTACAGTTTTGGGGTTTTTCTACTT
GAGTTGATCACAGGAAGAAGAGCTGTAGATTCATCCAGACCAGAATGTGATCAAATCCTC
GTTAAATGGGCCAAACCCATGCTCAAAAATCCAAGTAGGCACCATGAGCTGGTGGACCCA
CTTCTTAGAGGTGACTACCCAAGGGGAGATTTGAACCAGGCTGTGGCCGTGGCAGCAATG
TGCCTACAAGAGGAAGCCTCAGTTCGGCCATACATGAGTGACACTGTTGTCGCATTGGGA
TTCCTCGCAGAAGTACCCTCAGGCTATAAAGAGAAGATTAACACTGTGCCCCAAAACAAA
CAGGATAAAGATCCCTCATTTACTGGTAGCACTAAGCAAGATCAAAGATCATTCGATCGT
CAACGAGCAGTTACTGAGGCCATTGAATGGGGAGCCACGAGGCAAAAACAGAAAGCTCAA
ATCCAAGAGAAAACAAGTCACTTGCAGGGCATTGTCGCCCCCACTGAAACCAACAGGTTG
TAAAAACCAGTAGCAGCTATGTATAAATCCATTGAGCATAGTTTTTTAGGTTCTCTCCTA
ACTTATAAGTTACACAATTTTGTGCAAGCCTTAGAGATGAATTGTCATATAGAATTAGAA
TTTGTAAATGACATTCTTGTCTCATAAAGGT