Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0121400-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:1142027:1145744:1 gene:Os05g0121400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0121400-01);Similar to Transcription factor IIIA. (Os05t0121400-02)
Sequence

ATGGGGAGCGTGGAGCTCGGAGCGGAGGAAAGGGAGGTCGCCGGCGGGGAGGGGGGGAGC
AAGGGGGCGGCGCCTCCTGCTAGGGATATTAGGCGGTACAAGTGCGATTTCTGCAGTGTC
GTCCGTTCCAAGAAGGGGTTGATCCGTGCCCACGTCCTCGAACACCATAAGGATGAAGTG
GATGATTTGGATGATTACTTGGGACGTGGTGGCGGCGAGACGTGCAAAGAGATGGACCAT
GATTGCAAGGTGTGCGGTGCTAGTTTTAAGAAGCCGGCCCATTTGAGGCAACACATGCAG
AGCCATTCACTTGAGAGGCCCTTTTCCTGCCATGTAGATGGTTGCCCCTTCAGCTATAGC
AGGAAGGACCATTTGAACCGGCATCTACTTACACATCAAGGAAAGCTATTTGCATGCCCC
ATGGAAGGATGCAACCGTAAGTTCACTATAAAGGGTAATATCCAAAGGCATGTTCAGGAA
ATGCATAAAGATGGCTCTCCTTGTGAAAGCAAGAAAGAGTTCATCTGTCCTGAGGAAAAC
TGTGGGAAGACTTTTAAATATGCTTCTAAGTTACAGAAGCATGAGGAATCACATGTCAAG
TTGGATTATAGTGAAGTTATCTGCTGTGAACCAGGCTGCATGAAGGCATTTACCAACTTG
GAATGCCTCAAGGCCCATAACAAATCTTGTCATCGACATGTTGTCTGTGATGTCTGTGGA
ACCAAACAGCTGAAGAAGAACTTCAAACGTCATCAGAGAATGCATGAAGGTTCCTGTGTT
ACTGAGAGGGTTCGATGCCACCTCAAGGACTGCAAGTTGTCATTTTCAAAGAAATCCAAT
CTGGACAAGCATGTGAAAGCAGTCCATGAGCAGAAGCGACCCTTTGTATGTGGATTCTCT
GGGTGTGGCAAGAGTTTTTCGTACAAGCATGTAAGGGACAACCATGAGAAATCTAGTGCT
CATGTGTACGTTCAGGCTAATTTCGAAGAAATTGACGGGGAACGACCACGTCAAGCAGGT
GGGAGGAAGAGGAAAGCCATACCTGTGGAGAGTTTGATGCGGAAGAGGGTAGCTGCTCCT
GATGATGATGCCCCAGCTTGTGATGATGGAACTGAGTATTTGAGATGGCTTCTCTCAGGC
TGA

Peptide Sequence

PEP ID

Os05t0121400-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:1142027:1145744:1 gene:Os05g0121400 transcript:Os05t0121400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0121400-01);Similar to Transcription factor IIIA. (Os05t0121400-02)
Sequence

MGSVELGAEEREVAGGEGGSKGAAPPARDIRRYKCDFCSVVRSKKGLIRAHVLEHHKDEV
DDLDDYLGRGGGETCKEMDHDCKVCGASFKKPAHLRQHMQSHSLERPFSCHVDGCPFSYS
RKDHLNRHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSPCESKKEFICPEEN
CGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRHVVCDVCG
TKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFS
GCGKSFSYKHVRDNHEKSSAHVYVQANFEEIDGERPRQAGGRKRKAIPVESLMRKRVAAP
DDDAPACDDGTEYLRWLLSG

Transcript Sequence

Transcript ID

Os05t0121400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:1142027:1145744:1 gene:Os05g0121400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0121400-01);Similar to Transcription factor IIIA. (Os05t0121400-02)
Sequence

GAGGGTTTCTCCTTCTCCCAGTGCGCCGCCGTCGCCAACATCTGGAGCCTCGCGGAGCCG
CTGATTCAGCGAATTCCTCTGCAATTAGAGAGATGGGGAGCGTGGAGCTCGGAGCGGAGG
AAAGGGAGGTCGCCGGCGGGGAGGGGGGGAGCAAGGGGGCGGCGCCTCCTGCTAGGGATA
TTAGGCGGTACAAGTGCGATTTCTGCAGTGTCGTCCGTTCCAAGAAGGGGTTGATCCGTG
CCCACGTCCTCGAACACCATAAGGATGAAGTGGATGATTTGGATGATTACTTGGGACGTG
GTGGCGGCGAGACGTGCAAAGAGATGGACCATGATTGCAAGGTGTGCGGTGCTAGTTTTA
AGAAGCCGGCCCATTTGAGGCAACACATGCAGAGCCATTCACTTGAGAGGCCCTTTTCCT
GCCATGTAGATGGTTGCCCCTTCAGCTATAGCAGGAAGGACCATTTGAACCGGCATCTAC
TTACACATCAAGGAAAGCTATTTGCATGCCCCATGGAAGGATGCAACCGTAAGTTCACTA
TAAAGGGTAATATCCAAAGGCATGTTCAGGAAATGCATAAAGATGGCTCTCCTTGTGAAA
GCAAGAAAGAGTTCATCTGTCCTGAGGAAAACTGTGGGAAGACTTTTAAATATGCTTCTA
AGTTACAGAAGCATGAGGAATCACATGTCAAGTTGGATTATAGTGAAGTTATCTGCTGTG
AACCAGGCTGCATGAAGGCATTTACCAACTTGGAATGCCTCAAGGCCCATAACAAATCTT
GTCATCGACATGTTGTCTGTGATGTCTGTGGAACCAAACAGCTGAAGAAGAACTTCAAAC
GTCATCAGAGAATGCATGAAGGTTCCTGTGTTACTGAGAGGGTTCGATGCCACCTCAAGG
ACTGCAAGTTGTCATTTTCAAAGAAATCCAATCTGGACAAGCATGTGAAAGCAGTCCATG
AGCAGAAGCGACCCTTTGTATGTGGATTCTCTGGGTGTGGCAAGAGTTTTTCGTACAAGC
ATGTAAGGGACAACCATGAGAAATCTAGTGCTCATGTGTACGTTCAGGCTAATTTCGAAG
AAATTGACGGGGAACGACCACGTCAAGCAGGTGGGAGGAAGAGGAAAGCCATACCTGTGG
AGAGTTTGATGCGGAAGAGGGTAGCTGCTCCTGATGATGATGCCCCAGCTTGTGATGATG
GAACTGAGTATTTGAGATGGCTTCTCTCAGGCTGATTCGTCGTGAACCAGAATACAGAAA
TGTGAGATCTTTGGATATCAAGGGTGTTGATATGGTTTGAGATACTAGTAGCAACGTTCT
TTTCCTTTGTGCATGTATAGGTAAAACATGGAAGTAATTTTGATAAGACCTCTATGTACT
GTCTCAGACATCAAGTTACCAGAAGTCCAGAATGCAGAAACGCCAGATCTTTATATGCTC
AAGGGTGTTTATGTGCTAGTTAGGTAGCAACGTTCTCTCTTTTTGTATGTATAGGAAAAG
TGAAAGGAATTTTAGTAGACCCTAATGTCTTGTGACAGGCATGGTAATTTATCAAGGTTG
GTTTGTTC