Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0115900-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:865008:870797:-1 gene:Os05g0115900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 20 protein. (Os05t0115900-01);Similar to beta-hexosaminidase beta chain. (Os05t0115900-02)
Sequence	ATGCCCCCCAAACTCCTCACTTATCTCATCCTAGCCCTCCTCGCCGCCTCCGCCGCCGCA GCGCGGCGCCACCCGTCTCCGGCGAGCTCAGCCGCCGCCGGGGAGCCCGTCTACCTATGG CCGCTGCCGAGGAACTTCACCTCGGGTTCCCGGACCCTGCTGGTCGACCCTGACCTCGCG CTCGACGGCCAGGGCCCCGGCGGCGCCGCCGCGGCGGTGGCCGAGGCGTTCGAGAGGTAC AGATCGCTCGTCTTCTCTCCATGGGCGCACGCCGCGCGCAACGCCTCGGGTGGGTACGAC GTCGGGAAGCTCACCGTCGTCGTCGCCTCCGCCGATGAGAAGCTGGAGCTTGGAGTGGAC GAGAGCTACACGATCTATGTCGCGGCGGCGGGCGGCGTCAATTCGATCGTGGGTGGAGCA ACCATAGAGGCTAACACCATATATGGAGCTATTCGTGGATTAGAGACATTCAGTCAATTG TGTGTTTTCAACTACGATACCAAAAATGTCGAAGTGCGTCATGCCCCATGGTACATTGAA GACGAACCACGCTTTGCTTTTCGTGGGTTGCTCCTTGACACATCAAGGCATTTCCTCCCA GTAGATGTGATTAAACAAGTGATTGACTCCATGTCATTTTCTAAGCTGAATGTTCTTCAT TGGCATATCATCGACGAGCAATCTTTTCCATTAGAAGTACCATCATATCCAAAACTATGG AAGGGTTCATATTCAAAATTGGAGCGCTACACTGTGGAAGATGCACGTGATATTGTCAGC TATGCTAGGAAAAGAGGTATCCATGTCATGGCTGAAATTGACGTGCCTGGCCATGCAGAA TCATGGGGAAAGGGATATCCAAAGCTCTGGCCTTCTCCTAAGTGCAGAGAACCGTTAGAT GTTACTAGCAATTTCACATTTGAAGTTATTTCTGGAATTTTGTCTGATATGAGAAAAATC TTTCCATTTGGGCTCTTCCACTTGGGTGGTGATGAAGTATATACAGGTTGCTGGAATGCA ACACCCCATGTGAAACAGTGGCTTCATGAACGCAACATGACTACAAAAGATGCTTACAAA TACTTCGTCCTGAAGGCTCAAGAGATAGCAATTAACCTTAATTGGATTCCAGTAAATTGG GAAGAAACCTTCAACTCATTCAAAGAAAATCTCAATCCTCTAACCGTGGTGCATAACTGG CTGGGTCCTGGAGTCTGCCCTAAAGTTGTTGAAAAGGGTTTCAGATGTATAATGAGTAAC CAAGGTGTATGGTACCTTGATCATCTTGATGTTCCCTGGCAAGATTTCTACACTAGTGAG CCACTCGCTGGAATTAATAACACAGCACAGCAAAAGCTTGTACTTGGTGGAGAGGTTTGC ATGTGGGGTGAGACAGCAGACACCTCTGATGTTCAGCAAACGATATGGCCACGAGCAGCT GCAGCAGCAGAGCGTATGTGGAGTCAGTTAGAGGCCATATCTGCCCAAGACCTGGAAACA ACCGTCTTGGCTCGGTTACACTATTTCAGATGCCTGCTGAATCACCGTGGAATCGCTGCA GCTCCAGTCACAAACTCTTATGCTCGGCGTCCCCCAATTGGTCCTGGTTCATGCTTCATT CAGTAA

Peptide Sequence

PEP ID	Os05t0115900-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:865008:870797:-1 gene:Os05g0115900 transcript:Os05t0115900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 20 protein. (Os05t0115900-01);Similar to beta-hexosaminidase beta chain. (Os05t0115900-02)
Sequence	MPPKLLTYLILALLAASAAAARRHPSPASSAAAGEPVYLWPLPRNFTSGSRTLLVDPDLA LDGQGPGGAAAAVAEAFERYRSLVFSPWAHAARNASGGYDVGKLTVVVASADEKLELGVD ESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQLCVFNYDTKNVEVRHAPWYIE DEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFSKLNVLHWHIIDEQSFPLEVPSYPKLW KGSYSKLERYTVEDARDIVSYARKRGIHVMAEIDVPGHAESWGKGYPKLWPSPKCREPLD VTSNFTFEVISGILSDMRKIFPFGLFHLGGDEVYTGCWNATPHVKQWLHERNMTTKDAYK YFVLKAQEIAINLNWIPVNWEETFNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCIMSN QGVWYLDHLDVPWQDFYTSEPLAGINNTAQQKLVLGGEVCMWGETADTSDVQQTIWPRAA AAAERMWSQLEAISAQDLETTVLARLHYFRCLLNHRGIAAAPVTNSYARRPPIGPGSCFI Q

Transcript Sequence

Transcript ID	Os05t0115900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:865008:870797:-1 gene:Os05g0115900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 20 protein. (Os05t0115900-01);Similar to beta-hexosaminidase beta chain. (Os05t0115900-02)
Sequence	CACAAACTCCTAAACCCACAATATACAACCCAAGATACCCGGGCACATTTACAGAAATGC CCCCCAAACTCCTCACTTATCTCATCCTAGCCCTCCTCGCCGCCTCCGCCGCCGCAGCGC GGCGCCACCCGTCTCCGGCGAGCTCAGCCGCCGCCGGGGAGCCCGTCTACCTATGGCCGC TGCCGAGGAACTTCACCTCGGGTTCCCGGACCCTGCTGGTCGACCCTGACCTCGCGCTCG ACGGCCAGGGCCCCGGCGGCGCCGCCGCGGCGGTGGCCGAGGCGTTCGAGAGGTACAGAT CGCTCGTCTTCTCTCCATGGGCGCACGCCGCGCGCAACGCCTCGGGTGGGTACGACGTCG GGAAGCTCACCGTCGTCGTCGCCTCCGCCGATGAGAAGCTGGAGCTTGGAGTGGACGAGA GCTACACGATCTATGTCGCGGCGGCGGGCGGCGTCAATTCGATCGTGGGTGGAGCAACCA TAGAGGCTAACACCATATATGGAGCTATTCGTGGATTAGAGACATTCAGTCAATTGTGTG TTTTCAACTACGATACCAAAAATGTCGAAGTGCGTCATGCCCCATGGTACATTGAAGACG AACCACGCTTTGCTTTTCGTGGGTTGCTCCTTGACACATCAAGGCATTTCCTCCCAGTAG ATGTGATTAAACAAGTGATTGACTCCATGTCATTTTCTAAGCTGAATGTTCTTCATTGGC ATATCATCGACGAGCAATCTTTTCCATTAGAAGTACCATCATATCCAAAACTATGGAAGG GTTCATATTCAAAATTGGAGCGCTACACTGTGGAAGATGCACGTGATATTGTCAGCTATG CTAGGAAAAGAGGTATCCATGTCATGGCTGAAATTGACGTGCCTGGCCATGCAGAATCAT GGGGAAAGGGATATCCAAAGCTCTGGCCTTCTCCTAAGTGCAGAGAACCGTTAGATGTTA CTAGCAATTTCACATTTGAAGTTATTTCTGGAATTTTGTCTGATATGAGAAAAATCTTTC CATTTGGGCTCTTCCACTTGGGTGGTGATGAAGTATATACAGGTTGCTGGAATGCAACAC CCCATGTGAAACAGTGGCTTCATGAACGCAACATGACTACAAAAGATGCTTACAAATACT TCGTCCTGAAGGCTCAAGAGATAGCAATTAACCTTAATTGGATTCCAGTAAATTGGGAAG AAACCTTCAACTCATTCAAAGAAAATCTCAATCCTCTAACCGTGGTGCATAACTGGCTGG GTCCTGGAGTCTGCCCTAAAGTTGTTGAAAAGGGTTTCAGATGTATAATGAGTAACCAAG GTGTATGGTACCTTGATCATCTTGATGTTCCCTGGCAAGATTTCTACACTAGTGAGCCAC TCGCTGGAATTAATAACACAGCACAGCAAAAGCTTGTACTTGGTGGAGAGGTTTGCATGT GGGGTGAGACAGCAGACACCTCTGATGTTCAGCAAACGATATGGCCACGAGCAGCTGCAG CAGCAGAGCGTATGTGGAGTCAGTTAGAGGCCATATCTGCCCAAGACCTGGAAACAACCG TCTTGGCTCGGTTACACTATTTCAGATGCCTGCTGAATCACCGTGGAATCGCTGCAGCTC CAGTCACAAACTCTTATGCTCGGCGTCCCCCAATTGGTCCTGGTTCATGCTTCATTCAGT AAACAGGGAGCTGCAGAGCAAAGATAGGCATAAGAGGGGTATTTGCCTCCATACACCTTC CACACTTCAGACAAAAATGGTATCTTGTCAATTTTAGTGTACTGTTTCTGTATGTTTGTT TGCATTACATTACCTATCACACGGATGTTTGACAATAAAATTTTATAGTCCCTCGTCATG TATTTTCGCCCTAAGTTTCAAATAAAACTGCAGAGCCGTTCCTT