Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0112900-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:694205:698938:1 gene:Os05g0112900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0112900-01);Pentatricopeptide repeat domain containing protein. (Os05t0112900-02)
Sequence	ATGGGGAGGCTTTCCTGTATCAAACGCCTTCCTCGATTCGCTCTCCGGCGCGGCGTCTCC GATGCTTTCCTCCGTCCCCTTCTCCGCACCGCATTCCTCCTCCGCCGCCGCCGCCGTCTC AGCACCGCGGAGAGCACTCATCCTCCGCGGCGGGGACGCTTCCGTCGGGACCCCGATTCT GATGAGAGCAAACTCGTCTCCCTCGCGCGGCAGCGTGGGGCGGCGGCCGCTCGCGCCATG TTCGACGGAATGCCGCGCCGGGACGATGCCGTCGCGTACGCCGCGATGGTCGGAATCCAC CTCTGGGACCGGGACCTTCCCCACGCGGAGGCGCTCTACCGTGCGGCGCCACCGGATTGC CGGGGGATCCATCTTGACACTGTCATGCTCGATGGGTACGTCAAGGCAGGCCAGGTCGAC CGTGCCCGCAGGCTGTTCGACGGAATGGCGGTGAAGAACGTGGTCGCCTGGACATGCATG GTCTCTGGATATTGCCGTGCGGGCCTTGTGGACGAAGCGCGCCGCCTGTTTGATTTGATG CCATACAGGAATGTTTTTTCGTGGACGACAATGGTGCAGGGTTATGCACACAATGGGATG CTACGGGAAGCGAGGGAGATGTTTGATAAGATGCCAGAGAGGAACGTGGTTGCTTGGACA GTGATGGTTAAAGCCTATGTTGATAATGGTTGTATTCAGGAGGCTTTGGAGTTGTTCAAC AGGATGCCTCAGATGAATTCATATTCTTGGAATGCCATGGCAACCGGTCTTATGAGTGCT GGGAAAGTGGATGACGCGGTTCAGTTGTTTGATAAGATGCCACATAAGAATGTAGTCTCT TGGACTATAATGGTCACTGGCTTGGCACAGAATGGTTTTGTTTCTAGGGCAAGAGAGTTC TTTGACAGAATGCCAAAGAAGGATATTCCGGCATGGAATTCAATGATCACTGCTTATACC AATGATGGCCAAGTGAATGATGCACAAAGGTTGTTTGATATTATGCCTTCAAAGAACCTG GTGACTTGGAATATCATCATTGATGGGTATTCCATGAATAATCTGAAGGACGAAGCTTTG AGGTTGTTTCTTCTTATGCTCCGCTCAGCAGTATCTCCTGACAGCACTACATTAATTAGT GTCTTAGTAGTATCTGAGAGCACAATGGAGGTTAGACAAATTCATGGGTTGTCCACAAAA CTGGGGTACCAGCCCGAAACTAACTTAGGAAATACTCTGGTTTCAATGTATTCTAGAAGT GGCGATCTGTCATCTGCATGGCTTGCTTTCAGGAGATTGAACGAGAAGGATGCCATAACA TGGACATCGATGATACAAGCTTTAGCAAACCATGGGTGTGCACCTTGCGCCTTGCAGGGC TTTGCCCAAATGTTAAGGTGTGGATATAAGCCCAGCTCAACTACCTTTACTGCTGTGTTG TCAGCTTGTAACCATGTTGGATTAGTGGAGAAAGGCCGAAAAATATTCAAATCAATTAGC CATGTTTATGGACTAGGGCCAACCATTGAGCACTACTCTTGCCTTGTGGATCTCCTAGGT CGAGCAGGGTACGTGAGGGAAGCCAAGGAAGTGGTTGACGGTATGCAGCGGGATATGTGT GATGAGGCCATTCTAGGGACGCTTCTGGGATCTTGCATGACACATAATGAGGTGGAGGTA GGAAGAGCTGTGGGTGAGGATCTTGTCAAAATTGACCCCTCTGGTTCAGGAGGCTATACG CTTTTGGCCAATGTTTTTGCATCTGGTGGGATGTGGAATGAGGTGGCAAGTGTGTGGAAG ATTATGAAGGGAAGCAAAGTCAAGAAGACTCCTGGTTTTAGCCAGATTGAAGTAAACGCA AGGAACCATGTTTTCTACTCAAGGGACCAGATGCATTCACAACGTACAGAAATTTATGAG ATGCTAAATAGTAGGCTTGTCCCTCAGATGAAGGGTTCATCAAGTCTAGGAACTGATTTC TACTGA

Peptide Sequence

PEP ID	Os05t0112900-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:694205:698938:1 gene:Os05g0112900 transcript:Os05t0112900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0112900-01);Pentatricopeptide repeat domain containing protein. (Os05t0112900-02)
Sequence	MGRLSCIKRLPRFALRRGVSDAFLRPLLRTAFLLRRRRRLSTAESTHPPRRGRFRRDPDS DESKLVSLARQRGAAAARAMFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDC RGIHLDTVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLM PYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFN RMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREF FDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEAL RLFLLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRS GDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVL SACNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMC DEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWK IMKGSKVKKTPGFSQIEVNARNHVFYSRDQMHSQRTEIYEMLNSRLVPQMKGSSSLGTDF Y

Transcript Sequence

Transcript ID	Os05t0112900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:694205:698938:1 gene:Os05g0112900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0112900-01);Pentatricopeptide repeat domain containing protein. (Os05t0112900-02)
Sequence	GTTTCCGTAATAAAAAAATTAGAAGAGTGGTATCTCGATAGTGCCACTCGTAAGAGTGGC AAATAGTTAAAAAAAACCCATATTCCTTCCGTCGTCTCCGACTCCGAACATCCTCTCCGG CGGCCGGCGGCCATCGTCGTTGCCTCTCGGTACTCCCGCCCATGACCGCTGCCACGACCT AGCAATGGGGAGGCTTTCCTGTATCAAACGCCTTCCTCGATTCGCTCTCCGGCGCGGCGT CTCCGATGCTTTCCTCCGTCCCCTTCTCCGCACCGCATTCCTCCTCCGCCGCCGCCGCCG TCTCAGCACCGCGGAGAGCACTCATCCTCCGCGGCGGGGACGCTTCCGTCGGGACCCCGA TTCTGATGAGAGCAAACTCGTCTCCCTCGCGCGGCAGCGTGGGGCGGCGGCCGCTCGCGC CATGTTCGACGGAATGCCGCGCCGGGACGATGCCGTCGCGTACGCCGCGATGGTCGGAAT CCACCTCTGGGACCGGGACCTTCCCCACGCGGAGGCGCTCTACCGTGCGGCGCCACCGGA TTGCCGGGGGATCCATCTTGACACTGTCATGCTCGATGGGTACGTCAAGGCAGGCCAGGT CGACCGTGCCCGCAGGCTGTTCGACGGAATGGCGGTGAAGAACGTGGTCGCCTGGACATG CATGGTCTCTGGATATTGCCGTGCGGGCCTTGTGGACGAAGCGCGCCGCCTGTTTGATTT GATGCCATACAGGAATGTTTTTTCGTGGACGACAATGGTGCAGGGTTATGCACACAATGG GATGCTACGGGAAGCGAGGGAGATGTTTGATAAGATGCCAGAGAGGAACGTGGTTGCTTG GACAGTGATGGTTAAAGCCTATGTTGATAATGGTTGTATTCAGGAGGCTTTGGAGTTGTT CAACAGGATGCCTCAGATGAATTCATATTCTTGGAATGCCATGGCAACCGGTCTTATGAG TGCTGGGAAAGTGGATGACGCGGTTCAGTTGTTTGATAAGATGCCACATAAGAATGTAGT CTCTTGGACTATAATGGTCACTGGCTTGGCACAGAATGGTTTTGTTTCTAGGGCAAGAGA GTTCTTTGACAGAATGCCAAAGAAGGATATTCCGGCATGGAATTCAATGATCACTGCTTA TACCAATGATGGCCAAGTGAATGATGCACAAAGGTTGTTTGATATTATGCCTTCAAAGAA CCTGGTGACTTGGAATATCATCATTGATGGGTATTCCATGAATAATCTGAAGGACGAAGC TTTGAGGTTGTTTCTTCTTATGCTCCGCTCAGCAGTATCTCCTGACAGCACTACATTAAT TAGTGTCTTAGTAGTATCTGAGAGCACAATGGAGGTTAGACAAATTCATGGGTTGTCCAC AAAACTGGGGTACCAGCCCGAAACTAACTTAGGAAATACTCTGGTTTCAATGTATTCTAG AAGTGGCGATCTGTCATCTGCATGGCTTGCTTTCAGGAGATTGAACGAGAAGGATGCCAT AACATGGACATCGATGATACAAGCTTTAGCAAACCATGGGTGTGCACCTTGCGCCTTGCA GGGCTTTGCCCAAATGTTAAGGTGTGGATATAAGCCCAGCTCAACTACCTTTACTGCTGT GTTGTCAGCTTGTAACCATGTTGGATTAGTGGAGAAAGGCCGAAAAATATTCAAATCAAT TAGCCATGTTTATGGACTAGGGCCAACCATTGAGCACTACTCTTGCCTTGTGGATCTCCT AGGTCGAGCAGGGTACGTGAGGGAAGCCAAGGAAGTGGTTGACGGTATGCAGCGGGATAT GTGTGATGAGGCCATTCTAGGGACGCTTCTGGGATCTTGCATGACACATAATGAGGTGGA GGTAGGAAGAGCTGTGGGTGAGGATCTTGTCAAAATTGACCCCTCTGGTTCAGGAGGCTA TACGCTTTTGGCCAATGTTTTTGCATCTGGTGGGATGTGGAATGAGGTGGCAAGTGTGTG GAAGATTATGAAGGGAAGCAAAGTCAAGAAGACTCCTGGTTTTAGCCAGATTGAAGTAAA CGCAAGGAACCATGTTTTCTACTCAAGGGACCAGATGCATTCACAACGTACAGAAATTTA TGAGATGCTAAATAGTAGGCTTGTCCCTCAGATGAAGGGTTCATCAAGTCTAGGAACTGA TTTCTACTGATCAAAATGATTTACTATATGCTTTAGAGTCAAGCCCAAAAGGCTATCAGT ACAATCCTGATATTCATCCTCTGGCTAGTATGGAAAGAAGCAAGGCAAAGGTGTTCGAAA ACAGGTCGTCTTCCATGCTCACTTCTGGGCTACAGAAGCTGCAAGCGTGGCGAGACAAAG TGGCATGGAAGTTCAAAACTTCTTTGTGAAATATTAGCCTTTGATTTTTTTTTCCTCAGA GCCTGTGTGCTGCTGTTTCACCGCTTGGGTTGGGTAGCTATGTAACCAGACTTTGTTTGG GGACAGCTCTCTTTCTAATGACATGATATGCAAGTTTTTGCATGTTATCCCCGCCCTCCC AACACACACACACCCTCCCACCACCCAAAAAAGGTTAAGTAGGTTATCGAGAGTTGATCT GATCATGTAAGAATGATATAGACTAGCCCGGCTGACAGATATCCAAAGGTTTATGTTACC TTGATGGGGCTGTTAATTATTTTAGGCAGGACAGAAAAGGTTAATACCATCATATTCAGG AGTCTACCCGGGCATATGGCAGAAATTGATCAGCACCAAATACCGAGGGTACAGGTCACA TTCACATAAAGGCGTCTGTTCTGAGATACAGAAGATGGTACATTCCATGAGCCTGGGGTT AGGCAGCAGTATATGGTTTAGCCATGACCAACTATATGCACCTGTCGCTGGATCCCAGAA GTTTTATGGATCAGGAGGCCACACGGGATACATTTTCTAGCGTGATCATGGAATACCTTT GGATTATGCCCTTCTGTAAGACAACCAAATGAGCAGTAGAAGTTGTTATCGTAAGACATT CAGGATTCTTTCTATTGCAACGACTAAATTCAGTAAGCAAGCAAATGGTATGCAAACAGA TCTATGAGGTCAGGCAAGCAATAATTTTGTTCAAAAAGGAGGTCAGCAAGCACTAAGGTG GCGTTTAACTGGAAGCTGAAGTAGGGTGGTGATCAACATCATGCTGAACTGTTTGTGTGA AGAAGCTTGAATTCATCATGCTCCTGTAAATTCCCTCCATCCTTCATGATATTCGCTTTC AGCGGTGCTTCTGACCTGATGGTCTTAAGAAATTGCAGATATGAGGAGGCTGGAGGCGCG TCAGAAGTCAGAACCTCCTTTATGCCGCCAGCTGTTTTCATAGCAGTGCTCATGTATATC TGAAAAGAGAATCGAGAATCCAAACCTTATCTTGCTTGATGTTCAGAATGCAATCTGTGG ATTCCATCCATGCAGAATGTTCATCTCTACTACTGTATTAGATTTCG