Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0111000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:593356:597828:1 gene:Os05g0111000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:REPLICATION PROTEIN A 1C description:Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein); Core protein p24; Core protein p12]. (Os05t0111000-01)
Sequence	ATGGAGCCGCAGCTGACGCCGGGGGCGGTGCAGGCGATAGCGGAGCACCCGGACGGGACG GGGACGATCCAGCCGGTGCTGCAGGTGGTGGACGTGCGGCCCGTCACCACCAAGAACGCG CCGCCCACGCCCAAGCCCGCCGAGCGCTTCCGGATGATGCTCTCCGACGGCGTCAACACG CAGCAGTCCATGCTCGCCACCGCCCTCAACCCCCTCGTCAAGGACGCCACGCTCCGCCCC GGCACCGTCGTCCAGCTCACCGACTTCATGTGCAACACCATCCAGGGTAAAAGGATTATT ATTGTTGTGAAACTTGATGTTCTGCAAAATGACTGCATTGTAATTGGGAACCCTAAACAC TATGAACCAAAGAGTCTAACTAAGGAGCAAGACCCTAACTTACAGGCCAGTGTGGCTCAA ACCAATAATGGAACCTATTCTGGTGGCGCAAGCATGCTGGGCCCCTCCGTTGCGCCAAGG GCAGAGCAGGCTGCTAGCAACAGTTCATATGGTGGACCTTATAATAGTGCTCAAGGAATG TTGGGTTCTTCTATTGGCAGGACAGTTGAACCTGGTCCTGCAAATGTTTCTGCTGTTGGC TCTTACGGTGCAATATCAGCACAGAACACAACGAATGCCAACATGATGCAGCCTACATCT CAGCTGAACATAATGAATGCCAACACGATGCAGCCTACATCTCAGCTGAACACAATGAAT GCCAACACGATGCAGCCTACATCTCAGCTGTCCTCGTTGAACCCTAATCAAAACCAAAGG TTTGCAGCTCCTGCTTCGGGTGGAGTCTTTGGCCCTCCTGGCAATGCTTATGGGCAGCCT TCACGTCCTTCATATCAGCAGCCACCTCCAGTGTATATGAATAGAGGGCCTGCCTCTAGG AATGACTCTGCAACTCGTATCATCCCAATTACCGCGTTGAATCCATACCAGCCTAAGTGG ACAATCAAGGCAAGGGTGACAGCAAAGTCTGATATCAGGCATTGGAGCAATGCCAGGAGT TCAGGAACAGTTTTCTCGTTTGATCTTCTTGATGCACAAGGTGGAGAAATTCGTGCACAA TGCTGGAAAGAATCGGCTGATAAGTTTTTTGGCCAAATTGAGGTTGGTAGGGTGTATTTG ATATCTAGAGGATCACTGAAGCCCGCCCAGAAGAAGTATAACACTTTGAACCATGATTAT GAAATAACTCTGGATATCGGGTTATCAACTGTCGAGGTTTGCTCTGATGATGATAACAGC ATCCCCAGGCTGCAGTACAATTTCCGGCAGATCAGCGAACTAGAGAATATGGCTAACGAG ACCATTGTTGATTTACTTGGTGTTGTTACATCAGTTAGCCCTTCTGCAACAATAATGAGG AAGATCGGCACTGAAACCCGGAAAAGGTCTATTCAACTGAAGGACTTGTCTGGCCGGAGC ATTGAAGTAACATTATGGGGAAACTTCTGTGATGCTGAGGGTCAGCAGTTGCAGTTGCAG TGTGATTCTGGTTCGAACCCTATAATTGCTTTTAAAGGTGCCCGTGTGGGTGATTTTAAT GGCAAATCAGTGAGCACAATTGGTTCAACCCAGTTAATTATAAATCCAGACTTTCCTGAG GTGGAAAGGCTGAGGCAGTGGTACATGACAGAAGGAAAAACTGCTCCTTGCATTTCTTTA TCTCGAGAAATGCTTAATATGGGCCGGACTGATGCCCGCAAAACAATTGCACAGATCAAG GATGAAAATTTGGGACGATTAGAGAAGCCAGACTGGATCACTGTTAAGGCTGCAATCTCC CATGTGACTACTGAGAGTTTTTGTTATCCAGCTTGCCCAAAGCTCTTGCCCGTCGGGAGG CAGTGTAATAAAAAGGCAATAAATAATGGTGATGGGATGTGGCATTGTGACCGATGTGAT GAGAGTTTTCAAAATCCTGAATATAGGTACATGCTTAGGTTCCAGATCCAAGACCACACT GGTAGTACCTATGCTAGTGCGTTCGATGAGGCAGGTGAGCAGATTTTTGGTCGCAAGGCA GGAGAACTTTTCTCGATAAGAAATGTCGACCAAGATGATGCACAATTTGCAGAGATCATA GAAGGGGTCCGGTGGCATCTATATCTATTCAAACTGAAGGTCAAGGAAGAAACCTACAAT GATGAGCAAAGCTTGAAATGCACCGCTGTCAAGGTTGAAAAACTGGACCCATCAAAAGAG AGCAACGTCCTACTTGGAGCGATTGACAACCTTTTACTGGACCCAAAGGGGCAAAGTGAT CTTGCCCCTAATGCTGGTTTCACCGATCCGGTAGGCGGTCACGGTGCGCCTACATCTAGC AATGCCTATGCCATGAATACTGGTGGCGTGAATCAGTTTGGGCAGCAAGCGAGTATAAGC GCCGGGATGTCTACTCCACTAGCAGCAACACGAAACTTGCAGACATGCAGCATTTGTGGA GCAAATGGGCACAGCGCCCAGATCTGCCATGTGGGTGCAGATATGGATATGCAGGAAACA TCAGCCGGTGGAAGCTCCATGGGTAACTACAACTCCATCGCTGGCAACGGCAGCTCGGAG TGTTACAAATGTAAACAGCCCGGGCACTATGCTAGAGACTGTCCAGGGCAGTCCACTGGT GGCTTGGAGTGTTTCAAATGTAAACAGCCTGGGCACTTTTCTAGAGACTGTCCAGTGCAG TCTACTGGTGGCTCGGAGTGTTTCAAATGTAAACAGCCTGGGCACTTCGCTAGAGATTGT CCAGGGCAGTCTACTGGCGCCCAGCACCAGACATATGGGAATAATGTTGCAGCATCAAGG GGTTACAATAGGCAATCCTTTGTTGGTGGCTACTGA

Peptide Sequence

PEP ID	Os05t0111000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:593356:597828:1 gene:Os05g0111000 transcript:Os05t0111000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:REPLICATION PROTEIN A 1C description:Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein); Core protein p24; Core protein p12]. (Os05t0111000-01)
Sequence	MEPQLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNT QQSMLATALNPLVKDATLRPGTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNPKH YEPKSLTKEQDPNLQASVAQTNNGTYSGGASMLGPSVAPRAEQAASNSSYGGPYNSAQGM LGSSIGRTVEPGPANVSAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMN ANTMQPTSQLSSLNPNQNQRFAAPASGGVFGPPGNAYGQPSRPSYQQPPPVYMNRGPASR NDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQ CWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNS IPRLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLKDLSGRS IEVTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQLIINPDFPE VERLRQWYMTEGKTAPCISLSREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAIS HVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHT GSTYASAFDEAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYN DEQSLKCTAVKVEKLDPSKESNVLLGAIDNLLLDPKGQSDLAPNAGFTDPVGGHGAPTSS NAYAMNTGGVNQFGQQASISAGMSTPLAATRNLQTCSICGANGHSAQICHVGADMDMQET SAGGSSMGNYNSIAGNGSSECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQ STGGSECFKCKQPGHFARDCPGQSTGAQHQTYGNNVAASRGYNRQSFVGGY

Transcript Sequence

Transcript ID	Os05t0111000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:593356:597828:1 gene:Os05g0111000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:REPLICATION PROTEIN A 1C description:Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein); Core protein p24; Core protein p12]. (Os05t0111000-01)
Sequence	AAAAACCCTCCCCCGAATTCGAAATCGAATCGCCTCCCACATCTCTCTCTCTCGCGGAAG CTTCTGGAAGGTTCGGAGGCGGCGGCGGCGGAGGCGGCGGGGACGACGATGGAGCCGCAG CTGACGCCGGGGGCGGTGCAGGCGATAGCGGAGCACCCGGACGGGACGGGGACGATCCAG CCGGTGCTGCAGGTGGTGGACGTGCGGCCCGTCACCACCAAGAACGCGCCGCCCACGCCC AAGCCCGCCGAGCGCTTCCGGATGATGCTCTCCGACGGCGTCAACACGCAGCAGTCCATG CTCGCCACCGCCCTCAACCCCCTCGTCAAGGACGCCACGCTCCGCCCCGGCACCGTCGTC CAGCTCACCGACTTCATGTGCAACACCATCCAGGGTAAAAGGATTATTATTGTTGTGAAA CTTGATGTTCTGCAAAATGACTGCATTGTAATTGGGAACCCTAAACACTATGAACCAAAG AGTCTAACTAAGGAGCAAGACCCTAACTTACAGGCCAGTGTGGCTCAAACCAATAATGGA ACCTATTCTGGTGGCGCAAGCATGCTGGGCCCCTCCGTTGCGCCAAGGGCAGAGCAGGCT GCTAGCAACAGTTCATATGGTGGACCTTATAATAGTGCTCAAGGAATGTTGGGTTCTTCT ATTGGCAGGACAGTTGAACCTGGTCCTGCAAATGTTTCTGCTGTTGGCTCTTACGGTGCA ATATCAGCACAGAACACAACGAATGCCAACATGATGCAGCCTACATCTCAGCTGAACATA ATGAATGCCAACACGATGCAGCCTACATCTCAGCTGAACACAATGAATGCCAACACGATG CAGCCTACATCTCAGCTGTCCTCGTTGAACCCTAATCAAAACCAAAGGTTTGCAGCTCCT GCTTCGGGTGGAGTCTTTGGCCCTCCTGGCAATGCTTATGGGCAGCCTTCACGTCCTTCA TATCAGCAGCCACCTCCAGTGTATATGAATAGAGGGCCTGCCTCTAGGAATGACTCTGCA ACTCGTATCATCCCAATTACCGCGTTGAATCCATACCAGCCTAAGTGGACAATCAAGGCA AGGGTGACAGCAAAGTCTGATATCAGGCATTGGAGCAATGCCAGGAGTTCAGGAACAGTT TTCTCGTTTGATCTTCTTGATGCACAAGGTGGAGAAATTCGTGCACAATGCTGGAAAGAA TCGGCTGATAAGTTTTTTGGCCAAATTGAGGTTGGTAGGGTGTATTTGATATCTAGAGGA TCACTGAAGCCCGCCCAGAAGAAGTATAACACTTTGAACCATGATTATGAAATAACTCTG GATATCGGGTTATCAACTGTCGAGGTTTGCTCTGATGATGATAACAGCATCCCCAGGCTG CAGTACAATTTCCGGCAGATCAGCGAACTAGAGAATATGGCTAACGAGACCATTGTTGAT TTACTTGGTGTTGTTACATCAGTTAGCCCTTCTGCAACAATAATGAGGAAGATCGGCACT GAAACCCGGAAAAGGTCTATTCAACTGAAGGACTTGTCTGGCCGGAGCATTGAAGTAACA TTATGGGGAAACTTCTGTGATGCTGAGGGTCAGCAGTTGCAGTTGCAGTGTGATTCTGGT TCGAACCCTATAATTGCTTTTAAAGGTGCCCGTGTGGGTGATTTTAATGGCAAATCAGTG AGCACAATTGGTTCAACCCAGTTAATTATAAATCCAGACTTTCCTGAGGTGGAAAGGCTG AGGCAGTGGTACATGACAGAAGGAAAAACTGCTCCTTGCATTTCTTTATCTCGAGAAATG CTTAATATGGGCCGGACTGATGCCCGCAAAACAATTGCACAGATCAAGGATGAAAATTTG GGACGATTAGAGAAGCCAGACTGGATCACTGTTAAGGCTGCAATCTCCCATGTGACTACT GAGAGTTTTTGTTATCCAGCTTGCCCAAAGCTCTTGCCCGTCGGGAGGCAGTGTAATAAA AAGGCAATAAATAATGGTGATGGGATGTGGCATTGTGACCGATGTGATGAGAGTTTTCAA AATCCTGAATATAGGTACATGCTTAGGTTCCAGATCCAAGACCACACTGGTAGTACCTAT GCTAGTGCGTTCGATGAGGCAGGTGAGCAGATTTTTGGTCGCAAGGCAGGAGAACTTTTC TCGATAAGAAATGTCGACCAAGATGATGCACAATTTGCAGAGATCATAGAAGGGGTCCGG TGGCATCTATATCTATTCAAACTGAAGGTCAAGGAAGAAACCTACAATGATGAGCAAAGC TTGAAATGCACCGCTGTCAAGGTTGAAAAACTGGACCCATCAAAAGAGAGCAACGTCCTA CTTGGAGCGATTGACAACCTTTTACTGGACCCAAAGGGGCAAAGTGATCTTGCCCCTAAT GCTGGTTTCACCGATCCGGTAGGCGGTCACGGTGCGCCTACATCTAGCAATGCCTATGCC ATGAATACTGGTGGCGTGAATCAGTTTGGGCAGCAAGCGAGTATAAGCGCCGGGATGTCT ACTCCACTAGCAGCAACACGAAACTTGCAGACATGCAGCATTTGTGGAGCAAATGGGCAC AGCGCCCAGATCTGCCATGTGGGTGCAGATATGGATATGCAGGAAACATCAGCCGGTGGA AGCTCCATGGGTAACTACAACTCCATCGCTGGCAACGGCAGCTCGGAGTGTTACAAATGT AAACAGCCCGGGCACTATGCTAGAGACTGTCCAGGGCAGTCCACTGGTGGCTTGGAGTGT TTCAAATGTAAACAGCCTGGGCACTTTTCTAGAGACTGTCCAGTGCAGTCTACTGGTGGC TCGGAGTGTTTCAAATGTAAACAGCCTGGGCACTTCGCTAGAGATTGTCCAGGGCAGTCT ACTGGCGCCCAGCACCAGACATATGGGAATAATGTTGCAGCATCAAGGGGTTACAATAGG CAATCCTTTGTTGGTGGCTACTGAAGTATTTTGCAAGGGAAGAAGCAGCAGCAGCAGCAG CATCTTGATTTTGTTCATCTTGGATGGCATCGGTGTATCGTGTATAGTTGTTAAACCTGC CTTATGTTTATGCCTTTATTACCTCCAATGTCCACTGGGCAGGGAACCTTGTGATCTGGA CTTTGTATCGCTACCTTAAAAAGTATATTGTCCTTGTCTGCAATCTTGT