Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0110500-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:562926:566453:1 gene:Os05g0110500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 17 description:Similar to DEAD-box ATP-dependent RNA helicase 17. (Os05t0110500-01);DEAD-box RNA helicase protein, Stress responses (Os05t0110500-02)
Sequence	ATGGCCAAGAAGCTCGGCAAGTCGCCGGTGGCGAAGGAGGAGGACAAGGAGGGGCTCTTC GCGTCATGCTCCTTCACCGACCTCGGCCTCCACCCCACCCTCTGCGCTCACCTCCAAGAT AAGATGGGCTTCCAAGCGCCAACAAGAATCCAAGCTCAGGCAATTCCAGTCGCCATGTCT GGACAACACATGCTAGTGAAGGCAGCAACTGGTACTGGCAAGACTCTTGCGTACCTTGCA CCAATTGTTCACCTTCTCCAGATGAGGGAGCCTCGTGTTGAGAGAACTGATGGAACTTTT GCTCTGGTACTTGTACCAACACGGGAGCTATGCCTACAAGTTTATGGGATTGCACAGCAG TTGGTGCATCGTTTCCACTGGCTTGTCCCTGGTTACATAATGGGTGGTGAGAACAGAGCA AAAGAAAAGGCAAGATTGCGAAAAGGAATATCAATTCTAATTGCTACTCCTGGGCGTCTT CTGGACCACTTACAACATACGTCATCATTTGTCTACCCAAATATGCGTTGGATAGTTTTT GATGAAGCTGACAGCATTCTTGAACTTGGTTTTGGGAAAGCACTAGAGGATATACTAGAG CACTTGGGTTCAAGGAATGATACTTCTAACCAAAATAAAAACAAAATGGAACCTATGAAA AGGCAAAACCTTCTGTTATCTGCAACTCTCAATGAAAAGGTGAATCGGTTAGCCAAGATT AGTTTGAAGAACCCTGTGATGATTGGTCTTGACGAACAGAACTCCAGTGCCCATGGGAAG AACCACACTTCTCTATTATCTGATGATGAAGAGGAAATACTGGAAAAGCACAACGTTACA GTGGAACAAGCAGTTGACGATTTCAAGCTTCCTGCACAGCTTGTTCAAAGATATGTTAAA GTTTCATGTGGTTCAAGGCTCGCGATTCTTCTTACCATTCTTAAATCTCTGTTTGAAAGA CAACTGTCTCATAAGGTTGTTGTTTTCCTGTCAACATGTGACTCTGTAGATTTCCACCAT ACAGTACTCAGCCAGCTTGAGTGGAGCCCTGGCCTGCAACTGGATACGGATAAGAAGCAA AAGTTTATTAGCTGCAAAGTGTTCCGTTTACATGGGAATATGGACCAGGATGATCGCAAG AAATCATTTCTGGGATTCAGTTCTGAGAAATCTGCAATTCTTGTATCTACTGATGTTGCT GCTAGGGGCTTGGACTTTCCAAAAGTTAAATGTATCATACAGTATGATTCACCTGGGGAG GCTTCTGAATATGTTCACAGGGTTGGAAGAACTGCAAGGATTGGTGAAAAGGGGGAGGCT CTCCTGTTTCTCCAACCTATTGAAACCGACTACTTGAGAGATCTAGAGCTACATGGTGCA TCACTTACAGAATACCCCCTCCAAAAGGTTTTAGACAGTTTTCCTGTAAATGGACAGAGG CTTCACAAAAGGAAGCAAATATCTTTAGATATGCATCCATGGATAATGTCTTTACAGAGA GCATTGGAAAGTTTTGTCACATCCGAGGACACGACGAAGAAGCTTGCAAGAGATGCCTTC TGTTCTTGGGTGCGCGCCTACACTGCCCACCGAGGTGAACTGAAGAAGATTTTTATGGTC AAGAAGCTCCATTTGGGGCATGTAGCTAGAAGCTTTGGGTTGAAGGAGCAACCCTCCTTG TTGGGAAGGTCACACCAGGTGCAACTCAAGAAGAGGAAGAAAGAACAGAAGCGCGAAAGG CCTGCAAAAAGGAGGAAAATCCCGGCCAAGAGATGA

Peptide Sequence

PEP ID	Os05t0110500-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:562926:566453:1 gene:Os05g0110500 transcript:Os05t0110500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 17 description:Similar to DEAD-box ATP-dependent RNA helicase 17. (Os05t0110500-01);DEAD-box RNA helicase protein, Stress responses (Os05t0110500-02)
Sequence	MAKKLGKSPVAKEEDKEGLFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMS GQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQ LVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVF DEADSILELGFGKALEDILEHLGSRNDTSNQNKNKMEPMKRQNLLLSATLNEKVNRLAKI SLKNPVMIGLDEQNSSAHGKNHTSLLSDDEEEILEKHNVTVEQAVDDFKLPAQLVQRYVK VSCGSRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQ KFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGE ASEYVHRVGRTARIGEKGEALLFLQPIETDYLRDLELHGASLTEYPLQKVLDSFPVNGQR LHKRKQISLDMHPWIMSLQRALESFVTSEDTTKKLARDAFCSWVRAYTAHRGELKKIFMV KKLHLGHVARSFGLKEQPSLLGRSHQVQLKKRKKEQKRERPAKRRKIPAKR

Transcript Sequence

Transcript ID	Os05t0110500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:562926:566453:1 gene:Os05g0110500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 17 description:Similar to DEAD-box ATP-dependent RNA helicase 17. (Os05t0110500-01);DEAD-box RNA helicase protein, Stress responses (Os05t0110500-02)
Sequence	GCTGCGCCGCCCCAACTCCGGCGCCGCAACAAAGCCATGGCCAAGAAGCTCGGCAAGTCG CCGGTGGCGAAGGAGGAGGACAAGGAGGGGCTCTTCGCGTCATGCTCCTTCACCGACCTC GGCCTCCACCCCACCCTCTGCGCTCACCTCCAAGATAAGATGGGCTTCCAAGCGCCAACA AGAATCCAAGCTCAGGCAATTCCAGTCGCCATGTCTGGACAACACATGCTAGTGAAGGCA GCAACTGGTACTGGCAAGACTCTTGCGTACCTTGCACCAATTGTTCACCTTCTCCAGATG AGGGAGCCTCGTGTTGAGAGAACTGATGGAACTTTTGCTCTGGTACTTGTACCAACACGG GAGCTATGCCTACAAGTTTATGGGATTGCACAGCAGTTGGTGCATCGTTTCCACTGGCTT GTCCCTGGTTACATAATGGGTGGTGAGAACAGAGCAAAAGAAAAGGCAAGATTGCGAAAA GGAATATCAATTCTAATTGCTACTCCTGGGCGTCTTCTGGACCACTTACAACATACGTCA TCATTTGTCTACCCAAATATGCGTTGGATAGTTTTTGATGAAGCTGACAGCATTCTTGAA CTTGGTTTTGGGAAAGCACTAGAGGATATACTAGAGCACTTGGGTTCAAGGAATGATACT TCTAACCAAAATAAAAACAAAATGGAACCTATGAAAAGGCAAAACCTTCTGTTATCTGCA ACTCTCAATGAAAAGGTGAATCGGTTAGCCAAGATTAGTTTGAAGAACCCTGTGATGATT GGTCTTGACGAACAGAACTCCAGTGCCCATGGGAAGAACCACACTTCTCTATTATCTGAT GATGAAGAGGAAATACTGGAAAAGCACAACGTTACAGTGGAACAAGCAGTTGACGATTTC AAGCTTCCTGCACAGCTTGTTCAAAGATATGTTAAAGTTTCATGTGGTTCAAGGCTCGCG ATTCTTCTTACCATTCTTAAATCTCTGTTTGAAAGACAACTGTCTCATAAGGTTGTTGTT TTCCTGTCAACATGTGACTCTGTAGATTTCCACCATACAGTACTCAGCCAGCTTGAGTGG AGCCCTGGCCTGCAACTGGATACGGATAAGAAGCAAAAGTTTATTAGCTGCAAAGTGTTC CGTTTACATGGGAATATGGACCAGGATGATCGCAAGAAATCATTTCTGGGATTCAGTTCT GAGAAATCTGCAATTCTTGTATCTACTGATGTTGCTGCTAGGGGCTTGGACTTTCCAAAA GTTAAATGTATCATACAGTATGATTCACCTGGGGAGGCTTCTGAATATGTTCACAGGGTT GGAAGAACTGCAAGGATTGGTGAAAAGGGGGAGGCTCTCCTGTTTCTCCAACCTATTGAA ACCGACTACTTGAGAGATCTAGAGCTACATGGTGCATCACTTACAGAATACCCCCTCCAA AAGGTTTTAGACAGTTTTCCTGTAAATGGACAGAGGCTTCACAAAAGGAAGCAAATATCT TTAGATATGCATCCATGGATAATGTCTTTACAGAGAGCATTGGAAAGTTTTGTCACATCC GAGGACACGACGAAGAAGCTTGCAAGAGATGCCTTCTGTTCTTGGGTGCGCGCCTACACT GCCCACCGAGGTGAACTGAAGAAGATTTTTATGGTCAAGAAGCTCCATTTGGGGCATGTA GCTAGAAGCTTTGGGTTGAAGGAGCAACCCTCCTTGTTGGGAAGGTCACACCAGGTGCAA CTCAAGAAGAGGAAGAAAGAACAGAAGCGCGAAAGGCCTGCAAAAAGGAGGAAAATCCCG GCCAAGAGATGAATCTCCATAGCAGAAATGCTTGTAACTCGAAAACTAATGGTGGATCAT GATCCACTCCAATTTTGTGGAACTAACAGCCGCAGCTTGAAGGTGAAAACATTGACCCCA TGAAGCTTTCATGTTTTGGCCAGAAGCCTAGAGAAGAGCTAGTGTACTGCCTGTAATCTG AAATGTATCAAAAGACACAGAATGTTTTGCTCAGTTTGGGATTATCTACTGCTCTGCTAG TTACCCATTTTAATCAGAAATATAATCCATGTGTTTCTTCCTT