Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0109600-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:516952:522941:-1 gene:Os05g0109600 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA binding protein PufA. (Os05t0109600-01)
Sequence	ATGGTGACGGAGATGGCGACGCGCGGGGAGGCGGCGGCGGCGGCGGCGGCGGACCGGGAC ATGGAGCTCTTCCGGAGCGGGTCCGCGCCGCCGACGGTGGAGGGCGCGATGGCCAGCGCC GCCGCGGCCGCCGGCGACGTGTTCCTGGACGATGAGCTCCGGGCCGACCCGGTGTACCAG AGCTACTACTACTCCAATGCGCACCTCAACCCGCGCCTCCCGCCGCCGCTGCTCTCCAAG GAGGACTGGCGCTCGGCGCAGCACCGCCTCCGCTCCTCCGCCCTCGGCGGGATCGGCGAC GGCAGGAGGCAGCCGGCCGCGGCGGCGCAGGGGGATGGGCTCGTGGGGTTGCCCGGGATC GACCTCGATCGGCAGGGGAGCTTCTCCAGTATCTTCCAGGAGAGCTCGTATCAGCTGGAC ATGGGTAAGCAGGGCGCCGACCGCAACATTAGTGACTTTCTGGATTCTTCTCGGCCACAG TATGCTCTGCATCGTGAGACTAGTAGAGCTATGGGTGGTCTGCAGAGTGACAGCAATATA CAAAGCTTGGCTGAAGTTCAGAACAATGATTCATCAGCACATACATATGCCTCTCTTTTA GGATCATCTCTTTCTAGAAGCGCATCTCCAGATCCTGAGCTTGTTAGGAGGGTCCCCAGT CCTTGCCTCCCTCCAATTGGTGTGAAAGTCAGTGCTGATGATAAGAAGAACAATGGTGGT TCATCTTCCTTCCGTCGAAGTTCGTCTGCTATTGGTGAATCTGATAATCTGATAGCTGCT TTATCTGGGATGAATTTATCATCATCTGGAGCAGCTAGTGGACAGCAAACTGTGACCCAG TCTGAGCTCTACCAGGATGTTGATAATGTCCGTAAGTTTCTATTTGATCGTCAGGGTGAT CAATCAAATGGCAACCAGCAACACTCCTATATGAAACATCCCGAACAAGGACATTTTAAG GCACCTGATGGTTACTCTGCAAACTCGCCTAATTCTTCTATGATAAGAAATCAAATTAAT GCTGCTAGTTTCACATCGTTTGACAATCTGTCTGCTGGATCAGGCTTTGCTTCTCCTAGG ATCGGTTCTAGGTCCCCAGGTGGGACTTTATCTTCAAGGCAGAATTTGGTTGGTGGATCT AACTTTCTGAATTACAATGGAATTGGAAGTCCAAATGCAGCAACTTCTCTTCAAACAGCC ATTGATCCGTCATATATTCAGTACCTTCAGGCAGCTGAGATTGCTGCCCAACTCGCAGCT AGCTGTGATGATCCTCTCATGGCCAGTGGCCATCTGGGAAGTTCTTATATGGATTTACTT GGTCCTCAGAAAGCTTATGCTAGTCCATTGCTTCAGTCACAGAAGAACTGTGGCTACTAT GGAAACCTTGGATTTGGCCTTGGTTATTCTGGAAGTCCTTTGATGAGTCCTGTTCTTCCC TCTTCCCCTGCTGCACCTGGTAGTCCACTTAGGCATGGTGAACGCAGCATGCGCATGCAA TCAGGTATAAGAAACTTTGGTGGTTCCTTTGGTTCATGGAATCCTGACCTAGGTGGAAAG ATGAACATCAATATGATGCCTTCACTCCTGGAGGAATTCAAGAGCAACAAAAGCAAATCT TATGAGCTCTCAGAAATTGCTGGTCATGTTGTTGAGTTCAGTGCTGATCAATATGGAAGC CGATTCATACAGCAAAAGCTAGAAACGGCCAGTACTGAAGAGAAGGACATGGTCTTTTCA GAAATCATGCCTCAAGCTCTCACGTTGATGACCGATGTATTTGGAAATTATGTTGTTCAG AAGTTCTTTGAGCACGGAAGCCCTACCCAGATAAAGGAATTGGCCGACCAGCTTATTGGA CGTGTTCTTGCTCTCAGTCTTCAGATGTATGGATGCCGGGTTATACAGAAGGCTATAGAG GTTGTTGGTTTAGATCAGCAGACTAAAATGGTTGCTGAGCTGGATGGACACGTCATGCGC TGTGTACGTGATCAAAATGGGAACCATGTAATACAGAAATGCATAGAATGCATCCCTCAA CATGCTATCCAGTTCATTGTCTCAACATTCTATGGTCAAGTTGTGATGTTATCCACTCAT CCATATGGTTGTCGGGTTATACAGAGGGTGCTGGAGCATTGTGATGATCCTACAACACAG CAAATAATGATGGATGAGATTCTCCAGTCCGTTTGCTTGCTGGCTCAAGATCAATACGGC AACTACGTTGTTCAGCATGTACTGGAGCACGGAAAACCACATGAGAGATCTGCTATTATC GAGAAGTTAATTGGACAAATAGTTCAAATGAGCCAGCAAAAGTTTGCCTCAAATGTCATT GAGAAGTGCTTAGCCTTTGGGAATCCTGTAGAACGACAGATTTTGATCAGTGAAATGCTT GGATCCACTAATGAGAGTGAACACCTTGAGGTAATGATGAAAGATCAGTTTGCAAACTAT GTGGTGCAGAAGGTGCTAGAGACTTGTGATGATCAGCAGAGGGAGGCGATCCTTACAAGG ATAAAAGCACATCTGAACACGCTGAAGAAGTATACCTATGGGAAGCACATAGTAGCACGC GTAGAGAAGCTTGTTGCTGCTGGAGAGAAGCGACTAGGGCTTCAACCAGCATGCACCAGT GCCGCCTGA

Peptide Sequence

PEP ID	Os05t0109600-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:516952:522941:-1 gene:Os05g0109600 transcript:Os05t0109600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA binding protein PufA. (Os05t0109600-01)
Sequence	MVTEMATRGEAAAAAAADRDMELFRSGSAPPTVEGAMASAAAAAGDVFLDDELRADPVYQ SYYYSNAHLNPRLPPPLLSKEDWRSAQHRLRSSALGGIGDGRRQPAAAAQGDGLVGLPGI DLDRQGSFSSIFQESSYQLDMGKQGADRNISDFLDSSRPQYALHRETSRAMGGLQSDSNI QSLAEVQNNDSSAHTYASLLGSSLSRSASPDPELVRRVPSPCLPPIGVKVSADDKKNNGG SSSFRRSSSAIGESDNLIAALSGMNLSSSGAASGQQTVTQSELYQDVDNVRKFLFDRQGD QSNGNQQHSYMKHPEQGHFKAPDGYSANSPNSSMIRNQINAASFTSFDNLSAGSGFASPR IGSRSPGGTLSSRQNLVGGSNFLNYNGIGSPNAATSLQTAIDPSYIQYLQAAEIAAQLAA SCDDPLMASGHLGSSYMDLLGPQKAYASPLLQSQKNCGYYGNLGFGLGYSGSPLMSPVLP SSPAAPGSPLRHGERSMRMQSGIRNFGGSFGSWNPDLGGKMNINMMPSLLEEFKSNKSKS YELSEIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVFSEIMPQALTLMTDVFGNYVVQ KFFEHGSPTQIKELADQLIGRVLALSLQMYGCRVIQKAIEVVGLDQQTKMVAELDGHVMR CVRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRVLEHCDDPTTQ QIMMDEILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVI EKCLAFGNPVERQILISEMLGSTNESEHLEVMMKDQFANYVVQKVLETCDDQQREAILTR IKAHLNTLKKYTYGKHIVARVEKLVAAGEKRLGLQPACTSAA

Transcript Sequence

Transcript ID	Os05t0109600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:516952:522941:-1 gene:Os05g0109600 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA binding protein PufA. (Os05t0109600-01)
Sequence	TCTTCTTCTTCTCGCCTCTTCTCTTCTCTTCTCTTCCCCCACACTCTCTCACTAGCTTAG CTTAGCTAAAAAAAAGAAGAATAAATAAACTAAAATGGGAGCTTGAATCCCTCCCAAATC CGCACCATTACGCGCAATCCGTACACCTGCTCGACCCGCACATGGACCTTTCTTCTCCGA TTCGCCCGCTCTGAGCAACCGGGATCCGTTTCTGCTGCCCATTTTTTGTTCTGTTTTTGT TTTTGGTTTCTTGGGGGTGGAAATCTTGGCCATCTTTCTTGCGACTGTAATGGCGGGGGT TTTAGCTTGGTGAGACACTGTAGATCTCGTCGTCTTTTTTGATTTGGGTTTTTCGGATGG TGACGGAGATGGCGACGCGCGGGGAGGCGGCGGCGGCGGCGGCGGCGGACCGGGACATGG AGCTCTTCCGGAGCGGGTCCGCGCCGCCGACGGTGGAGGGCGCGATGGCCAGCGCCGCCG CGGCCGCCGGCGACGTGTTCCTGGACGATGAGCTCCGGGCCGACCCGGTGTACCAGAGCT ACTACTACTCCAATGCGCACCTCAACCCGCGCCTCCCGCCGCCGCTGCTCTCCAAGGAGG ACTGGCGCTCGGCGCAGCACCGCCTCCGCTCCTCCGCCCTCGGCGGGATCGGCGACGGCA GGAGGCAGCCGGCCGCGGCGGCGCAGGGGGATGGGCTCGTGGGGTTGCCCGGGATCGACC TCGATCGGCAGGGGAGCTTCTCCAGTATCTTCCAGGAGAGCTCGTATCAGCTGGACATGG GTAAGCAGGGCGCCGACCGCAACATTAGTGACTTTCTGGATTCTTCTCGGCCACAGTATG CTCTGCATCGTGAGACTAGTAGAGCTATGGGTGGTCTGCAGAGTGACAGCAATATACAAA GCTTGGCTGAAGTTCAGAACAATGATTCATCAGCACATACATATGCCTCTCTTTTAGGAT CATCTCTTTCTAGAAGCGCATCTCCAGATCCTGAGCTTGTTAGGAGGGTCCCCAGTCCTT GCCTCCCTCCAATTGGTGTGAAAGTCAGTGCTGATGATAAGAAGAACAATGGTGGTTCAT CTTCCTTCCGTCGAAGTTCGTCTGCTATTGGTGAATCTGATAATCTGATAGCTGCTTTAT CTGGGATGAATTTATCATCATCTGGAGCAGCTAGTGGACAGCAAACTGTGACCCAGTCTG AGCTCTACCAGGATGTTGATAATGTCCGTAAGTTTCTATTTGATCGTCAGGGTGATCAAT CAAATGGCAACCAGCAACACTCCTATATGAAACATCCCGAACAAGGACATTTTAAGGCAC CTGATGGTTACTCTGCAAACTCGCCTAATTCTTCTATGATAAGAAATCAAATTAATGCTG CTAGTTTCACATCGTTTGACAATCTGTCTGCTGGATCAGGCTTTGCTTCTCCTAGGATCG GTTCTAGGTCCCCAGGTGGGACTTTATCTTCAAGGCAGAATTTGGTTGGTGGATCTAACT TTCTGAATTACAATGGAATTGGAAGTCCAAATGCAGCAACTTCTCTTCAAACAGCCATTG ATCCGTCATATATTCAGTACCTTCAGGCAGCTGAGATTGCTGCCCAACTCGCAGCTAGCT GTGATGATCCTCTCATGGCCAGTGGCCATCTGGGAAGTTCTTATATGGATTTACTTGGTC CTCAGAAAGCTTATGCTAGTCCATTGCTTCAGTCACAGAAGAACTGTGGCTACTATGGAA ACCTTGGATTTGGCCTTGGTTATTCTGGAAGTCCTTTGATGAGTCCTGTTCTTCCCTCTT CCCCTGCTGCACCTGGTAGTCCACTTAGGCATGGTGAACGCAGCATGCGCATGCAATCAG GTATAAGAAACTTTGGTGGTTCCTTTGGTTCATGGAATCCTGACCTAGGTGGAAAGATGA ACATCAATATGATGCCTTCACTCCTGGAGGAATTCAAGAGCAACAAAAGCAAATCTTATG AGCTCTCAGAAATTGCTGGTCATGTTGTTGAGTTCAGTGCTGATCAATATGGAAGCCGAT TCATACAGCAAAAGCTAGAAACGGCCAGTACTGAAGAGAAGGACATGGTCTTTTCAGAAA TCATGCCTCAAGCTCTCACGTTGATGACCGATGTATTTGGAAATTATGTTGTTCAGAAGT TCTTTGAGCACGGAAGCCCTACCCAGATAAAGGAATTGGCCGACCAGCTTATTGGACGTG TTCTTGCTCTCAGTCTTCAGATGTATGGATGCCGGGTTATACAGAAGGCTATAGAGGTTG TTGGTTTAGATCAGCAGACTAAAATGGTTGCTGAGCTGGATGGACACGTCATGCGCTGTG TACGTGATCAAAATGGGAACCATGTAATACAGAAATGCATAGAATGCATCCCTCAACATG CTATCCAGTTCATTGTCTCAACATTCTATGGTCAAGTTGTGATGTTATCCACTCATCCAT ATGGTTGTCGGGTTATACAGAGGGTGCTGGAGCATTGTGATGATCCTACAACACAGCAAA TAATGATGGATGAGATTCTCCAGTCCGTTTGCTTGCTGGCTCAAGATCAATACGGCAACT ACGTTGTTCAGCATGTACTGGAGCACGGAAAACCACATGAGAGATCTGCTATTATCGAGA AGTTAATTGGACAAATAGTTCAAATGAGCCAGCAAAAGTTTGCCTCAAATGTCATTGAGA AGTGCTTAGCCTTTGGGAATCCTGTAGAACGACAGATTTTGATCAGTGAAATGCTTGGAT CCACTAATGAGAGTGAACACCTTGAGGTAATGATGAAAGATCAGTTTGCAAACTATGTGG TGCAGAAGGTGCTAGAGACTTGTGATGATCAGCAGAGGGAGGCGATCCTTACAAGGATAA AAGCACATCTGAACACGCTGAAGAAGTATACCTATGGGAAGCACATAGTAGCACGCGTAG AGAAGCTTGTTGCTGCTGGAGAGAAGCGACTAGGGCTTCAACCAGCATGCACCAGTGCCG CCTGAAGGGCAAGCAATGCTGTACAGCTAACAGTGGCTAGGTTTGGTTTGCACTCACGTT TTCGTTTTTTGCAACTAAAAACGTAGGCCAGTATGGCCTATTTGAGAAATAATAAAAATA CGCATCTTAAAATCGCTTGCACTGGAGAGTGTATATTATGTAGTTGAGGAGCACGCCGCA GGCAGCAGGGATGGATGATGGATTGAGTGAGTGATGTGTGCAAGTGCTAATCCAATATGG AAGGAAGAAGTTGTAAAGATGAGGAGGAAGAAGAAGATGAGTATACGTACTCTGCTGTAC AAATTTTATTTAGCACTAGAGAGATGAAAAGAAAAGAGAGAGGAAGCTGTTAGCTGTCAA TATGAGTGAGTGATGGGTTGTTGTTGATGCTGTAACATAACTAGAGTACTACTCAGGGCA CAAAACTAGCCTAAGCCCTAAGCCTTGTTTTTAGTTTTTACAGTTTAAGCTGAAGTTATT AGTATCAGCTTTGCTGAACTGTTTGTTAATTTGTTGTGTCTGCCGTGTCATTGTGTGTTG TTAATCCAGTCATGTGTACTGTACTATGGTGTAATGTAATGTAATCCAGGATGATGTTGA TGCACTGTT