Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0106600-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:354234:356610:-1 gene:Os05g0106600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin 97. (Os05t0106600-01);Similar to Actin 97. (Os05t0106600-02)
Sequence

ATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG
GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCT
CGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCA
CAGTCCAAGAGAGGTATCCTCACGCTCAAGTACCCCATCGAGCACGGTATCGTGAGCAAC
TGGGATGACATGGAGAAAATCTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCGCCC
GAGGAGCACCCTGTGTTGCTCACTGAAGCTCCTCTGAACCCTAAAGCCAACAGAGAGAAG
ATGACCCAGATTATGTTTGAGACTTTCAATGTCCCTGCAATGTACGTCGCTATCCAGGCC
GTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGGTATTGTTCTTGATTCTGGTGATGGT
GTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTG
GATCTGGCTGGTCGTGACCTCACAGACTCCCTTATGAAGATTCTGACTGAGAGGGGTTAC
TCCTTCACAACCTCCGCTGAGCGGGAAATTGTAAGGGACATCAAGGAGAAACTTGCGTAT
GTTGCCCTTGATTATGAGCAAGAGTTGGAAACCGCCAAGAACAGCTCCTCAGTTGAAAAG
AGTTATGAGCTACCTGATGGTCAAGTAATCACAATTGGTGCAGAGAGGTTCAGGTGCCCC
GAGGTCCTCTTCCAGCCATCCATGATCGGTATGGAGGCTGCTGGTATTCACGAGACCACC
TACAACTCCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTTTATGGCAACATTGTG
CTCAGTGGTGGTACAACCATGTTCCCAGGCATTGCTGATCGTATGAGCAAGGAGATCACT
GCCCTTGCCCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCACCTGAGCGCAAGTACAGC
GTCTGGATCGGAGGGTCGATCCTAGCCTCACTCAGCACTTTCCAACAGATGTGGATATCA
AAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGGAAATGCTTCTGA

Peptide Sequence

PEP ID

Os05t0106600-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:354234:356610:-1 gene:Os05g0106600 transcript:Os05t0106600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin 97. (Os05t0106600-01);Similar to Actin 97. (Os05t0106600-02)
Sequence

MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKNSSSVEK
SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
KDEYDESGPAIVHRKCF

Transcript Sequence

Transcript ID

Os05t0106600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:354234:356610:-1 gene:Os05g0106600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin 97. (Os05t0106600-01);Similar to Actin 97. (Os05t0106600-02)
Sequence

ACCTTGGCGTAAAAGAAAAGAAAATCTGCAGTCTGTGTCGTCTCCTCCGGTCCTTGCGCG
CAAGACCGAGTCGCGGCTGCCGATCTCCATCTGCCGATCGAGCAGAGCATAGCAGGGGAT
CCTGCTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAAT
GGCACTGGAATGGTCAAGGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCT
AGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCACAGTCCAAGAGAGGTATCCTCACGCTCAAGTACCCCATCGAG
CACGGTATCGTGAGCAACTGGGATGACATGGAGAAAATCTGGCATCACACTTTCTACAAT
GAGCTTCGTGTGGCGCCCGAGGAGCACCCTGTGTTGCTCACTGAAGCTCCTCTGAACCCT
AAAGCCAACAGAGAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTCCCTGCAATG
TACGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGGTATTGTT
CTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCT
CATGCCATTCTCCGTTTGGATCTGGCTGGTCGTGACCTCACAGACTCCCTTATGAAGATT
CTGACTGAGAGGGGTTACTCCTTCACAACCTCCGCTGAGCGGGAAATTGTAAGGGACATC
AAGGAGAAACTTGCGTATGTTGCCCTTGATTATGAGCAAGAGTTGGAAACCGCCAAGAAC
AGCTCCTCAGTTGAAAAGAGTTATGAGCTACCTGATGGTCAAGTAATCACAATTGGTGCA
GAGAGGTTCAGGTGCCCCGAGGTCCTCTTCCAGCCATCCATGATCGGTATGGAGGCTGCT
GGTATTCACGAGACCACCTACAACTCCATCATGAAGTGCGACGTGGATATCAGGAAGGAC
CTTTATGGCAACATTGTGCTCAGTGGTGGTACAACCATGTTCCCAGGCATTGCTGATCGT
ATGAGCAAGGAGATCACTGCCCTTGCCCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCA
CCTGAGCGCAAGTACAGCGTCTGGATCGGAGGGTCGATCCTAGCCTCACTCAGCACTTTC
CAACAGATGTGGATATCAAAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGG
AAATGCTTCTGATTTTCTCAAGTGCTCTGCTCTTGTCATCTGTAGTATCGAGTTATGTTT
GATTCGTTTTTCTAGCGATGTATTGGAGATTTGCAGGCTATGTTTGTTTTCTTTTTGGAG
ACGACTTCTCTATGTGTTCGATCAGTGTAAGAATGTCCTATGTTTGTGTCATCTCAGATT
GTTTGTTTGAGTTCACTTGTCAAACTTGGTTCGTTTGATT