Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0104100-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:219063:226280:1 gene:Os05g0104100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vps53-like, N-terminal domain containing protein. (Os05t0104100-01);Vps53-like, N-terminal domain containing protein. (Os05t0104100-02)
Sequence	ATGGGATCCAACACTCCACCCTCCCGCGCCGCCCTCGAGCCCTTCGCCACCCTCGACCCC GCCGCCCTCGCCGGCCTCCCAGCCTCCTCCCCGCTCACCGTCCGCTCCGCCGCCATCTCC TCCCCATACCTCTACCTCGGCACCGGCGGCGGCAAGCTCCTCCTCTTCACCCTCGATTCC CCCTCCCCCGACTTCCTCCGCCTCCTCCCCATCGGCCCCACCCGCCCCGTCTCCGCCATC CTCCCCCTCCCCGCCGTCGCCCGCCTCCTCCTCCTCGCCGACGGCCTCCTCCTCCTCGCG GACCCCCTCCTCTCCCGCCCCGTCCGCCGCCTCGGCTCCGTCCGCAACGTTGCCGCCGTC GCCGCCCGCGCCTCCGAATCCGACGATGATCGCCCCTCCTGCTCCCTCGCGGTCTCCGTC GGGAAGAAGCTGCTCCTCGTTGACCTCACCCTACACGACGCCGACGAGTTGGAGGTGCGG ACGCGTGACATCGCCCTCGTCGATGGCGTCAAGGCGCTCGCTTGGGTCGGGGACTCCGTC TTCGTCGGCACTGCCTCGGGCTACTCGCTCTTCTCCACCACGAACGCCCAAGGTGGCGAT ATATTCACGCTCCCTGAGTCCTCCAGGCCACCCAGGGTGAAGCCCCTGTCCGGGGGCGAC GAGGTCATGCTGCTCGTCGACAATGTCGGGGTCGTCGTGGACCGATCGGGGCATCCCGTT GGAAGCAGCTTCGTCTTTAACACCACGCCGGATTGTATAGCGGAGGTGTACCCCTATGTT GTTGTTGCCGGGGACTCCAAGGTAGATGTCTACAGAAGAAAGAACGGCGCACATTTGCAG GCTATTCCTTTTGCAAGGCCTGGTACAGGTGGACTAATTGTAGCGAGCGAGGATGCCGGA ATTGGCAGCGACGTAGTTGTGATTGCTACGGCTTATAAGGTATTTTGCTACCGTAAAGTA TCAGCGGTGGAACAGATCAAGGCACTACTACGAAGAAAGAGTTATGCAGAAGCTATTTCT TTGTTACAAGAGTTCGAGGCCGATGGGGAAATCTCAAATGACATGATTTCCTTTGTGCAT GCACAACTTGGATTCTTGTTGTTTTTCGACTTGCGTTTCGAGGATGCTGTAAATCATTTC TTGCTCTCGGAAACTATGCAACCAGCAGAAATATTTCCATTCATCATGCGGGACCCTAAT CGTTGGTCAGATCTGGTGCCAAGAAAGCGTTATTGGGGCTTGCATGCTCCCCCAAAGCCT CTTGAAGAAGTTATTGATGATGGGCTAGTAACACTTCAACAGGCATTGTTTCTCAAAAAG GCAGGTGTGGACACAGTTGTGGATGATGATTTCCTTTCAAATCCACCAAGCAGAGCTGAT CTGCTGGAAGTAGCAATCAGAAATATTATCAGGTACCTGTGTGCATCCCGAGAGAAGGAT TTATCTTCTTCAGAGATGGAAGGGGTTGATACTCTTCTGATGTATCTTTATAGAGCTCTC AATCTTGTTGATGACATGGAGAAGCTTGCATCATCTCAGAATAGCTGTGTTGTGGAGGAA CTAGAATCACTTTTGGATGACTCTGGACATCTGCGGACGCTTGCATTCTTATATGGCAGT AAAGGAATGTGCTCCAAATCCCTTGGTATCTGGCGTATCTTAGCAAGGAATTACAGCACT GGTTTGTGGAAGGATCATGCAATCCTACCTGAAACTGACTCTCTTGAAACTTCTGTTGGT AAAATGTCTGGTGAGGAAATTGCTGCCGTTGAAGCCTCCAAGATACTTCAAGCATCATCT GATCAGGACCTTGTTCTGGAGCATCTTGGATGGGTGGCAGACATTGATCAAGAGCTTGCA ACTGCAATTTTAACATCTGAAATGAGGGAAAAACAGCTTTCTCCTGAAAAGGTTGTTGCT GCCATTGATCCAGAGAAGGTTGGCATTCACCAAAGATATTTGCAATGGTTGATTGAGGAA CAGGAATGTGATGAGCCTCACTATCACACGTCATATGCATTGTCCCTCTCCAGATCTGCC ATGGACGCAGTCCGTTTGGGATCCAACAATGAAGAGAGAAACAATAAAGAATTTGATTCT GATATGCAGTTCATTTATCTATTGAGGGAAAGGTTGCAATTTTTTTTGCAATCGTCAGAT TTGTATGACCCAGAAGAAGTGCTATATGTGATTTCAGAATCTGAGCTATGGCTGGAAAAG GCTATTTTGTATAGGAAGATGGGCCAAGAGAACATTGTACTTCAGATATTAGCGCTGAAA CTGGAGGATAGTGAAGCTGCTGAGCAGTACTGTGCAGAGATTGGTCGAGATGATGCCTAT ATTCAGCTGTTGGATTTGTATCTGGACCCCAAAAATGGGAAAGGACCCATGTTTACAGCA GCCGTTCGACTTCTCCATAACCATGGGGAATCATTGGATCCAATACAAGTGTTGGAGAGA TTATCTGCTGATATGCCTCTTCAGCTAGCATCAGATACAATTTTGCGAATGCTGAGAGCC CGGGTGCACCATCATCGTCAAGGGCAGGTAGTTCATAATTTATCACGCGCAACGAACCTT GATGCACGGTTGACCAGATTAGAGGAGAGGTCAAGGCATGTGCAGCTAACTGACGAGAGC ATATGTGATTCATGTCGAGCTCGCCTTGGCACCAAGCTGTTTGTCATGTACCCAGATGAC TCAGTTGTATGCTACAGGTGCTACCGAAATCAAGGTGATTCTGCATCTCCACATGGACGC AACTTCAGGAAAGGTGGTATATTTAAACAAAGCTGGCTCGTTAGTAGATAA

Peptide Sequence

PEP ID	Os05t0104100-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:219063:226280:1 gene:Os05g0104100 transcript:Os05t0104100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vps53-like, N-terminal domain containing protein. (Os05t0104100-01);Vps53-like, N-terminal domain containing protein. (Os05t0104100-02)
Sequence	MGSNTPPSRAALEPFATLDPAALAGLPASSPLTVRSAAISSPYLYLGTGGGKLLLFTLDS PSPDFLRLLPIGPTRPVSAILPLPAVARLLLLADGLLLLADPLLSRPVRRLGSVRNVAAV AARASESDDDRPSCSLAVSVGKKLLLVDLTLHDADELEVRTRDIALVDGVKALAWVGDSV FVGTASGYSLFSTTNAQGGDIFTLPESSRPPRVKPLSGGDEVMLLVDNVGVVVDRSGHPV GSSFVFNTTPDCIAEVYPYVVVAGDSKVDVYRRKNGAHLQAIPFARPGTGGLIVASEDAG IGSDVVVIATAYKVFCYRKVSAVEQIKALLRRKSYAEAISLLQEFEADGEISNDMISFVH AQLGFLLFFDLRFEDAVNHFLLSETMQPAEIFPFIMRDPNRWSDLVPRKRYWGLHAPPKP LEEVIDDGLVTLQQALFLKKAGVDTVVDDDFLSNPPSRADLLEVAIRNIIRYLCASREKD LSSSEMEGVDTLLMYLYRALNLVDDMEKLASSQNSCVVEELESLLDDSGHLRTLAFLYGS KGMCSKSLGIWRILARNYSTGLWKDHAILPETDSLETSVGKMSGEEIAAVEASKILQASS DQDLVLEHLGWVADIDQELATAILTSEMREKQLSPEKVVAAIDPEKVGIHQRYLQWLIEE QECDEPHYHTSYALSLSRSAMDAVRLGSNNEERNNKEFDSDMQFIYLLRERLQFFLQSSD LYDPEEVLYVISESELWLEKAILYRKMGQENIVLQILALKLEDSEAAEQYCAEIGRDDAY IQLLDLYLDPKNGKGPMFTAAVRLLHNHGESLDPIQVLERLSADMPLQLASDTILRMLRA RVHHHRQGQVVHNLSRATNLDARLTRLEERSRHVQLTDESICDSCRARLGTKLFVMYPDD SVVCYRCYRNQGDSASPHGRNFRKGGIFKQSWLVSR

Transcript Sequence

Transcript ID	Os05t0104100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:219063:226280:1 gene:Os05g0104100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vps53-like, N-terminal domain containing protein. (Os05t0104100-01);Vps53-like, N-terminal domain containing protein. (Os05t0104100-02)
Sequence	GTCTTCCCCAGCTATCTATGGCGTCCCCCTGCTCCCAACCCTAGCTCACCCATGGGATCC AACACTCCACCCTCCCGCGCCGCCCTCGAGCCCTTCGCCACCCTCGACCCCGCCGCCCTC GCCGGCCTCCCAGCCTCCTCCCCGCTCACCGTCCGCTCCGCCGCCATCTCCTCCCCATAC CTCTACCTCGGCACCGGCGGCGGCAAGCTCCTCCTCTTCACCCTCGATTCCCCCTCCCCC GACTTCCTCCGCCTCCTCCCCATCGGCCCCACCCGCCCCGTCTCCGCCATCCTCCCCCTC CCCGCCGTCGCCCGCCTCCTCCTCCTCGCCGACGGCCTCCTCCTCCTCGCGGACCCCCTC CTCTCCCGCCCCGTCCGCCGCCTCGGCTCCGTCCGCAACGTTGCCGCCGTCGCCGCCCGC GCCTCCGAATCCGACGATGATCGCCCCTCCTGCTCCCTCGCGGTCTCCGTCGGGAAGAAG CTGCTCCTCGTTGACCTCACCCTACACGACGCCGACGAGTTGGAGGTGCGGACGCGTGAC ATCGCCCTCGTCGATGGCGTCAAGGCGCTCGCTTGGGTCGGGGACTCCGTCTTCGTCGGC ACTGCCTCGGGCTACTCGCTCTTCTCCACCACGAACGCCCAAGGTGGCGATATATTCACG CTCCCTGAGTCCTCCAGGCCACCCAGGGTGAAGCCCCTGTCCGGGGGCGACGAGGTCATG CTGCTCGTCGACAATGTCGGGGTCGTCGTGGACCGATCGGGGCATCCCGTTGGAAGCAGC TTCGTCTTTAACACCACGCCGGATTGTATAGCGGAGGTGTACCCCTATGTTGTTGTTGCC GGGGACTCCAAGGTAGATGTCTACAGAAGAAAGAACGGCGCACATTTGCAGGCTATTCCT TTTGCAAGGCCTGGTACAGGTGGACTAATTGTAGCGAGCGAGGATGCCGGAATTGGCAGC GACGTAGTTGTGATTGCTACGGCTTATAAGGTATTTTGCTACCGTAAAGTATCAGCGGTG GAACAGATCAAGGCACTACTACGAAGAAAGAGTTATGCAGAAGCTATTTCTTTGTTACAA GAGTTCGAGGCCGATGGGGAAATCTCAAATGACATGATTTCCTTTGTGCATGCACAACTT GGATTCTTGTTGTTTTTCGACTTGCGTTTCGAGGATGCTGTAAATCATTTCTTGCTCTCG GAAACTATGCAACCAGCAGAAATATTTCCATTCATCATGCGGGACCCTAATCGTTGGTCA GATCTGGTGCCAAGAAAGCGTTATTGGGGCTTGCATGCTCCCCCAAAGCCTCTTGAAGAA GTTATTGATGATGGGCTAGTAACACTTCAACAGGCATTGTTTCTCAAAAAGGCAGGTGTG GACACAGTTGTGGATGATGATTTCCTTTCAAATCCACCAAGCAGAGCTGATCTGCTGGAA GTAGCAATCAGAAATATTATCAGGTACCTGTGTGCATCCCGAGAGAAGGATTTATCTTCT TCAGAGATGGAAGGGGTTGATACTCTTCTGATGTATCTTTATAGAGCTCTCAATCTTGTT GATGACATGGAGAAGCTTGCATCATCTCAGAATAGCTGTGTTGTGGAGGAACTAGAATCA CTTTTGGATGACTCTGGACATCTGCGGACGCTTGCATTCTTATATGGCAGTAAAGGAATG TGCTCCAAATCCCTTGGTATCTGGCGTATCTTAGCAAGGAATTACAGCACTGGTTTGTGG AAGGATCATGCAATCCTACCTGAAACTGACTCTCTTGAAACTTCTGTTGGTAAAATGTCT GGTGAGGAAATTGCTGCCGTTGAAGCCTCCAAGATACTTCAAGCATCATCTGATCAGGAC CTTGTTCTGGAGCATCTTGGATGGGTGGCAGACATTGATCAAGAGCTTGCAACTGCAATT TTAACATCTGAAATGAGGGAAAAACAGCTTTCTCCTGAAAAGGTTGTTGCTGCCATTGAT CCAGAGAAGGTTGGCATTCACCAAAGATATTTGCAATGGTTGATTGAGGAACAGGAATGT GATGAGCCTCACTATCACACGTCATATGCATTGTCCCTCTCCAGATCTGCCATGGACGCA GTCCGTTTGGGATCCAACAATGAAGAGAGAAACAATAAAGAATTTGATTCTGATATGCAG TTCATTTATCTATTGAGGGAAAGGTTGCAATTTTTTTTGCAATCGTCAGATTTGTATGAC CCAGAAGAAGTGCTATATGTGATTTCAGAATCTGAGCTATGGCTGGAAAAGGCTATTTTG TATAGGAAGATGGGCCAAGAGAACATTGTACTTCAGATATTAGCGCTGAAACTGGAGGAT AGTGAAGCTGCTGAGCAGTACTGTGCAGAGATTGGTCGAGATGATGCCTATATTCAGCTG TTGGATTTGTATCTGGACCCCAAAAATGGGAAAGGACCCATGTTTACAGCAGCCGTTCGA CTTCTCCATAACCATGGGGAATCATTGGATCCAATACAAGTGTTGGAGAGATTATCTGCT GATATGCCTCTTCAGCTAGCATCAGATACAATTTTGCGAATGCTGAGAGCCCGGGTGCAC CATCATCGTCAAGGGCAGGTAGTTCATAATTTATCACGCGCAACGAACCTTGATGCACGG TTGACCAGATTAGAGGAGAGGTCAAGGCATGTGCAGCTAACTGACGAGAGCATATGTGAT TCATGTCGAGCTCGCCTTGGCACCAAGCTGTTTGTCATGTACCCAGATGACTCAGTTGTA TGCTACAGGTGCTACCGAAATCAAGGTGATTCTGCATCTCCACATGGACGCAACTTCAGG AAAGGTGGTATATTTAAACAAAGCTGGCTCGTTAGTAGATAACAAAGTTACAAGACAAGG AAACCATGGATGTGCGTGCCTCTGTTTCAGTGCTATGCGTCATGAAAGGAGAGCATATAT AATTTGGTGGTGAAGCCTCCCCTTTGCATTTGAAGGAGCATTCAGCAGCGATACGGTCTG AAACCATCTGAAATGAAGCATTATCGTTGATCATGGCGATTGGAGGGAGGCAGAGAGAGC AGTGGTCCTGGAAGGTGATACCGTAGCTTCCGGTGGTCGACCAGAAACCATGATGTTTTT TTGTCCATAGGATTGTTGTTTTGTTTTGATAGGATAAGATGGGCTACATAATTTTAGGTA TCGCTAGGATTTAATTTACACTGTAGACAAAACATAAGGCCTTTTGTGTCTAATAGAAGA AAGAAAGATGGAGAGC