Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0103000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:178860:181534:-1 gene:Os05g0103000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 083 description:Similar to MYC1. (Os05t0103000-01)
Sequence	ATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCC TCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGC TTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAG TATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCA ATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCT GCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCA ACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGC TTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGAT GTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTG AGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAG AAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACA GGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTT GAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGC ATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAG TGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACA GGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAA GGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAG

Peptide Sequence

PEP ID	Os05t0103000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:178860:181534:-1 gene:Os05g0103000 transcript:Os05t0103000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 083 description:Similar to MYC1. (Os05t0103000-01)
Sequence	MESLCGQLEHEHEQQLHQSSSSSLLPYCFLSAPEPLPVPGFPAGCSNLEEKAAAAMAAYE YESSSCSSLDPTSMPMVYSPIVLQPQECPLSFVFDNAAAAAGDNKWVPGIQGSCPCSLGS TQDMDASWGKSRKHKRSNVGLKGLEEKKARRVVLHQHDDDVKKKAKEAAGGEPPAGYIHV RARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQV EFLSMKLASLSPLMYEFGPGIDMHPDVLRQLAKMPHEMVQCMGQMGSTGISLQGLGGGPT GFAQDGSSHINMVVMQVGEQGQQQGSLHQVEMSSHCFFH

Transcript Sequence

Transcript ID	Os05t0103000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:178860:181534:-1 gene:Os05g0103000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 083 description:Similar to MYC1. (Os05t0103000-01)
Sequence	CTAGGAGTAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTG TGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCT CCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTG CAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAG CTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCC ACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAA ATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGA TGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGA GGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGC CAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGG CCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAG GATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCAT GCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCAT GAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCC AGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAAT GGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGA TGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGG CTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATG CATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAG TGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCC TGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTC CAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTA CCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTG CTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCA TGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTTGCAAATG TGT