Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0102200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:140783:143130:-1 gene:Os05g0102200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC retroviral-type domain containing protein. (Os05t0102200-01)
Sequence	ATGAGGGGCCAGATGAACAAAGGGGGGAAGCTGCAGCAATATCGTCCAGTTCAGAAGGAG AAGAATCAAACTGAAGAGAAGATTGCGACATCTGCAGTGACTCCTCAGACTGCAACCCAG CAACCAACTCCACCACCCAATTCTCGCACTGGTATGCAAACTAACCCACAGAGAATTTTC TGCCACAGATGCAAAGGTTTTGGCCACATGGCTAGGGATTGTAGCAATGTTGTCTTCTGT ATAAATTGTGCCAAACCCACACATAGGACAGAGGATTGCATCTATGACAAGCAGCCGAGG CCTATGGCAAAGCTAGTAGGGTATGGTGCTCCAGGTTTAGGTTGCATCTTAATTCAAAAC ACTAAGCCTGACCCACCTAAGGAGCATAATAATCCTCTGGCTATGATCTCTACTGTCTTT GGTGGAGAATTGACAGAAGCTCAACTTGAGCAAGGTTTCACGCAACAATTTAAGTGGAAT TGGGTTTGGAAAGCTAAAGCAATGCCTAATGGAAGCTTTCAGATGAGATTTCGTAACAAG ATAAAGTTTGATGAGCTTGCAAACTTTGATTATTTCAATGTCAAGGGCACTGATGTGCAA GTTAATGTGAAAGAATGGACCCAGAAATCTGAAGCAGTTGGGAAGTTGCATATTGTCTGG GTCAAAATCACTGGAATTCCTGAGGAAATGAAGGGTTACCAAGCTTTGTATGAAATTGGG TCAAATCTAGGGCCTGTCTTGGAGGTTGATATGGCTACTTTCAGAGCTAGCAATGTGATC AGGGCAAAAGTTGGAATGATGGAGCTGGGTGTTCTGCCTTTGAAACTAGTGTTAACTTCT CCCAAGGGACTTTTGTTCCAAGCTCATTTCAGTCTAGAGGAGGTGGTGGAACTGGGGTGG TTTAGTGATCAGCTAGATGACACTTTTGAGAAAATTGAGATACAAGAAAATACTCTGGAG GGTAGCAGTCAGAGAGAGGGTAAGCAAGTTGTGGTGGTGGATCCCATGACAGAAGATCAC CATGTCAGTAAGACGGGTAACGGGCTATTGAAGTTTGTCAGAAGCAAGTCCTGGTGCCAG AATTGA

Peptide Sequence

PEP ID	Os05t0102200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:140783:143130:-1 gene:Os05g0102200 transcript:Os05t0102200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC retroviral-type domain containing protein. (Os05t0102200-01)
Sequence	MRGQMNKGGKLQQYRPVQKEKNQTEEKIATSAVTPQTATQQPTPPPNSRTGMQTNPQRIF CHRCKGFGHMARDCSNVVFCINCAKPTHRTEDCIYDKQPRPMAKLVGYGAPGLGCILIQN TKPDPPKEHNNPLAMISTVFGGELTEAQLEQGFTQQFKWNWVWKAKAMPNGSFQMRFRNK IKFDELANFDYFNVKGTDVQVNVKEWTQKSEAVGKLHIVWVKITGIPEEMKGYQALYEIG SNLGPVLEVDMATFRASNVIRAKVGMMELGVLPLKLVLTSPKGLLFQAHFSLEEVVELGW FSDQLDDTFEKIEIQENTLEGSSQREGKQVVVVDPMTEDHHVSKTGNGLLKFVRSKSWCQ N

Transcript Sequence

Transcript ID	Os05t0102200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:140783:143130:-1 gene:Os05g0102200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC retroviral-type domain containing protein. (Os05t0102200-01)
Sequence	ATATTTAGAAACACGTGATGCCCCGTTTTGACAGTAATGGATCCCCCCAAATCCACTCAC CTCCAACAGTTGGTTCCCCATCTCCATCATCTGTGGGGAGAGAGCCCGAGAAATTTAGGG TTGAGAGGTGAGTGGCGGCGGAAGGAATCCACAAGTTGCAAGGGTGTGGAGGCGGAGGAG TGGCCTCGATTGGGGATCGGAGGTGGTGAATCTCGGTGGAGAGGCACAATCCAAGGCGAT AAGCGTCGATTTGCAAGGGTGGTTCGTGGGCGAATGGCGAATCAAGGGCATCCAGGCGGA GGGTGGCGTCGGCGTCCAGCCGTGGTGAGGAAGGTCGCCCTCCCGCAGTGGCGCACCAGG GGGGCTCCTCGCAAGCTGGGAGTGAGCAATCCACCAAGGCTGGAGGTGGAGAGATGAGGG GCCAGATGAACAAAGGGGGGAAGCTGCAGCAATATCGTCCAGTTCAGAAGGAGAAGAATC AAACTGAAGAGAAGATTGCGACATCTGCAGTGACTCCTCAGACTGCAACCCAGCAACCAA CTCCACCACCCAATTCTCGCACTGGTATGCAAACTAACCCACAGAGAATTTTCTGCCACA GATGCAAAGGTTTTGGCCACATGGCTAGGGATTGTAGCAATGTTGTCTTCTGTATAAATT GTGCCAAACCCACACATAGGACAGAGGATTGCATCTATGACAAGCAGCCGAGGCCTATGG CAAAGCTAGTAGGGTATGGTGCTCCAGGTTTAGGTTGCATCTTAATTCAAAACACTAAGC CTGACCCACCTAAGGAGCATAATAATCCTCTGGCTATGATCTCTACTGTCTTTGGTGGAG AATTGACAGAAGCTCAACTTGAGCAAGGTTTCACGCAACAATTTAAGTGGAATTGGGTTT GGAAAGCTAAAGCAATGCCTAATGGAAGCTTTCAGATGAGATTTCGTAACAAGATAAAGT TTGATGAGCTTGCAAACTTTGATTATTTCAATGTCAAGGGCACTGATGTGCAAGTTAATG TGAAAGAATGGACCCAGAAATCTGAAGCAGTTGGGAAGTTGCATATTGTCTGGGTCAAAA TCACTGGAATTCCTGAGGAAATGAAGGGTTACCAAGCTTTGTATGAAATTGGGTCAAATC TAGGGCCTGTCTTGGAGGTTGATATGGCTACTTTCAGAGCTAGCAATGTGATCAGGGCAA AAGTTGGAATGATGGAGCTGGGTGTTCTGCCTTTGAAACTAGTGTTAACTTCTCCCAAGG GACTTTTGTTCCAAGCTCATTTCAGTCTAGAGGAGGTGGTGGAACTGGGGTGGTTTAGTG ATCAGCTAGATGACACTTTTGAGAAAATTGAGATACAAGAAAATACTCTGGAGGGTAGCA GTCAGAGAGAGGGTAAGCAAGTTGTGGTGGTGGATCCCATGACAGAAGATCACCATGTCA GTAAGACGGGTAACGGGCTATTGAAGTTTGTCAGAAGCAAGTCCTGGTGCCAGAATTGAT GCTGGGAGAACATAAGATCAAATGTGCACAGATCTTGAGAGACATGGAGTTGGCAATGCA ACTGCAGAAAGGAGACTGTATTCTGACTCAGTGCTGTGAAGGAAGGAAAGAGGTTGGGAA AAAGGAAATGTCACAGGAGCAGGTTGATACTCTGCAGCAACCGATGAATCAAAAGTTGGC TGAAGAATTAGAAAGCTCTTAGACAGATGTTCCAGGGGATAAGGAGAATAGAGTCAGTTT TGATATGGGTTTGAATCAAGAAGACAAGGACAAAGTAGATCCGGGGGACAGTGAAGATTA CATGGATTCTCAGGAGTCTAAGGGAAGTTTTGCTAAGAGGTTGGGGATTAATCTAACTGA AGAAGCTCTTGGAAGTCAAGATGAAGAGATGAGGAGAAGCAAGAGACTGAAAGACAAGGA AGATAAGAGGTCCCAAGAGATGGCAATGGAAAGGAAAGAAGCACAAAATGCTTTCATCAA TAAAAATTCCCTCCTTCATACATGAATCAAATGTCTCTTTAATTGATATTGCTAGTGTTT TAGGGGTCAATCTGGGTTGTGCTGTTGATGATATAGCCTCTAATATTAATCTGATTAGAG ACTTAGAGATGGCCAGAATTAACCTCTTTCTGAAAGAGGGAACAAATTCTGAAGGTCAAC ATTGTCTTGATTCCTTTGAGAATTCAAATCCTGATTTAAATGTTTTTTCTGATGATTTGG ATTCTGAAACTAATGATGAGGATTTTAAAGAAATTGAGCATGTGCTTAAACAGATTCAAT CTTCAGCTAGAAAAATGAAACAGAGAAAGGGGAACCTTGAGATTTTCAAGGTAACCCCCA AAGTTGTC